Miyakogusa Predicted Gene

Lj1g3v0874330.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0874330.1 tr|G7KJI9|G7KJI9_MEDTR PHD-finger family protein
expressed OS=Medicago truncatula GN=MTR_6g044600
PE,34.27,1e-18,seg,NULL,CUFF.26504.1
         (414 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G02890.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...   137   2e-32
AT5G16680.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...   126   3e-29
AT1G43770.2 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...    63   3e-10

>AT3G02890.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr3:640828-645303 FORWARD LENGTH=994
          Length = 994

 Score =  137 bits (345), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 75/185 (40%), Positives = 99/185 (53%), Gaps = 3/185 (1%)

Query: 155 LRDLAQVEATVLLQGCVVPNTDHSWLGKFLIHNSEGIPRNCDGILAHLSNCASLGVVEVV 214
           +RDL      VL     +P  ++ W G   +  S  +     GI A+LS  AS  VVEVV
Sbjct: 677 MRDLPVAAPNVLSTTSAIPKPEYIWQGDLEVQKSRNLSAMHSGIQAYLSTLASPKVVEVV 736

Query: 215 DXXXXXXXXXXXXXXXXXXXQFMGSRVTGENIALYFFAKDVDSYDTYYRGLMNNMINNDL 274
                               QF  +    +++AL+FFAKD++SY+  Y+ L++NMI  DL
Sbjct: 737 KQFPEKVTLNEVPRLSSWPAQFQDTGAKEQHVALFFFAKDIESYEKNYKPLVDNMIQKDL 796

Query: 275 ALKGNLDGVELLIFPSNVLPERSQLWNQKMFLWGVFKVQK---VNNLANTPVSNSLKQGN 331
           ALKGNL+GVELLIF SN LP+  Q WN   FLWGVF+ +K    N   NTP+  S    N
Sbjct: 797 ALKGNLEGVELLIFASNQLPQDCQRWNMLFFLWGVFRGKKESCSNPPKNTPLPASCVSPN 856

Query: 332 RDTVK 336
           RDT +
Sbjct: 857 RDTFR 861


>AT5G16680.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr5:5467534-5472956 REVERSE LENGTH=1311
          Length = 1311

 Score =  126 bits (317), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 79/195 (40%), Positives = 104/195 (53%), Gaps = 6/195 (3%)

Query: 137 PAKVVAP-MTGPASGEMCPLRDLAQVEATVLLQGCVVPNTDHSWLGKFLIHNSEGIPRNC 195
           P+++V P ++ PA   +  +RDL  V + V+L+   +P+ +  W G   +          
Sbjct: 797 PSRLVEPEVSFPAVKPV--MRDLPLVPSPVMLRSSAIPDHEFIWQGDLEVRKIINQSAMH 854

Query: 196 DGILAHLSNCASLGVVEVVDXXXXXXXXXXXXXXXXXXXQFMGSRVTGENIALYFFAKDV 255
            GI AHLS  AS  V EVV+                   QF        +IAL+FFAKD 
Sbjct: 855 SGIQAHLSTLASPRVAEVVNKFPETFSLNEVPRKSTWPTQFEKLGTKEAHIALFFFAKDT 914

Query: 256 DSYDTYYRGLMNNMINNDLALKGNLDGVELLIFPSNVLPERSQLWNQKMFLWGVFKVQK- 314
           +SY+  Y+ L++NMI NDLALKGNLD V+LLIF SN LP   Q WN   FLWGVF+ +K 
Sbjct: 915 ESYERNYKPLVDNMIKNDLALKGNLDNVDLLIFASNQLPSNCQRWNMLYFLWGVFQGRKE 974

Query: 315 VNNLANT--PVSNSL 327
            N   NT  P SN L
Sbjct: 975 TNPQKNTSLPTSNVL 989


>AT1G43770.2 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr1:16548509-16550257 FORWARD LENGTH=431
          Length = 431

 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 1/122 (0%)

Query: 196 DGILAHLSNCASLGVVEVVDXXXXXXXXXXXXXXXXXXXQFMGSR-VTGENIALYFFAKD 254
           DGI+AH+S+ A   V E                       F+ +     E++AL+FF   
Sbjct: 308 DGIVAHVSSLACPKVHETASSLKGRLSAEILPRLEVWPKTFLKNGGPKDESVALFFFPSS 367

Query: 255 VDSYDTYYRGLMNNMINNDLALKGNLDGVELLIFPSNVLPERSQLWNQKMFLWGVFKVQK 314
             + +  +  L++ M  ND A++  L+  ELL+F S +LP+ S  +N K +LWGVFK ++
Sbjct: 368 ESNDEKVFDSLVDKMKKNDSAMRCVLNDAELLLFTSYMLPKDSWTFNSKYYLWGVFKPRQ 427

Query: 315 VN 316
            +
Sbjct: 428 TS 429