Miyakogusa Predicted Gene

Lj1g3v0862940.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0862940.1 Non Chatacterized Hit- tr|D8TS12|D8TS12_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,35.43,1e-18,DUF2372,Proteasome assembly chaperone 3,CUFF.26465.1
         (129 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G14710.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Proteasome...   174   1e-44

>AT5G14710.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Proteasome
           assembly chaperone 3 (InterPro:IPR018788); Has 120 Blast
           hits to 120 proteins in 47 species: Archae - 0; Bacteria
           - 0; Metazoa - 62; Fungi - 2; Plants - 49; Viruses - 0;
           Other Eukaryotes - 7 (source: NCBI BLink). |
           chr5:4746465-4747776 FORWARD LENGTH=124
          Length = 124

 Score =  174 bits (441), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 83/117 (70%), Positives = 95/117 (81%)

Query: 13  FPVSQLNFSLEIKGNKTEIFLSNYEDHFLVVATQIGSMGTILHARKEEGMSINPTFSVSV 72
           FPV     S E KGNKTEI + +YEDH L++ATQIG+MGTILHARKEEGMS+ PTFSVSV
Sbjct: 8   FPVRHRKVSFESKGNKTEIVICSYEDHILIIATQIGAMGTILHARKEEGMSVEPTFSVSV 67

Query: 73  LFGKRDEPMLVACARQLIEHMTLSGFSKPLVLSLGLKDHSPETLKGIIAAVIDKRQW 129
           +FGKRDEPML A AR+LIEH++    SKPLVLSLGLKDHS ETLK I+A VI+ R W
Sbjct: 68  IFGKRDEPMLTATARRLIEHISSIVPSKPLVLSLGLKDHSSETLKEIVATVIENRLW 124