Miyakogusa Predicted Gene

Lj1g3v0862930.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0862930.2 CUFF.26439.2
         (264 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G21700.1 | Symbols: ATSWI3C, CHB4, SWI3C | SWITCH/sucrose non...   261   3e-70
AT4G34430.3 | Symbols: CHB3, ATSWI3D | DNA-binding family protei...   100   1e-21
AT4G34430.2 | Symbols: CHB3, ATSWI3D | DNA-binding family protei...   100   1e-21
AT4G34430.1 | Symbols: CHB3, ATSWI3D | DNA-binding family protei...   100   1e-21
AT4G34430.4 | Symbols: CHB3, ATSWI3D | DNA-binding family protei...   100   1e-21
AT2G33610.1 | Symbols: ATSWI3B, CHB2, SWI3B | switch subunit 3 |...    77   9e-15
AT3G07740.1 | Symbols: ADA2A, ATADA2A, HAC10, HXA02, HXA2 | homo...    64   1e-10
AT3G07740.3 | Symbols: ADA2A, ATADA2A, HAC10, HXA02, HXA2 | homo...    63   2e-10
AT3G07740.4 | Symbols: ADA2A | homolog of yeast ADA2 2A | chr3:2...    62   5e-10
AT4G16420.1 | Symbols: ADA2B, PRZ1 | homolog of yeast ADA2 2B | ...    60   2e-09
AT4G16420.3 | Symbols: ADA2B, PRZ1 | homolog of yeast ADA2 2B | ...    60   2e-09
AT4G16420.2 | Symbols: ADA2B, PRZ1 | homolog of yeast ADA2 2B | ...    60   2e-09
AT3G07740.2 | Symbols: ADA2A, ATADA2A, HAC10, HXA02, HXA2 | homo...    54   1e-07

>AT1G21700.1 | Symbols: ATSWI3C, CHB4, SWI3C | SWITCH/sucrose
           nonfermenting 3C | chr1:7620156-7623978 REVERSE
           LENGTH=807
          Length = 807

 Score =  261 bits (668), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 126/198 (63%), Positives = 154/198 (77%), Gaps = 10/198 (5%)

Query: 3   NADSPDLDDRIREHLSENHCNYCSRPLPVVYYQSQKEVDILLCTDCFHDGRFVIGHSSID 62
           + DSPDLD RIREHL ++HCN+CSRPLP VY+QSQK+ DILLC DCFH GRFV+GHS +D
Sbjct: 326 DGDSPDLDIRIREHLCDSHCNHCSRPLPTVYFQSQKKGDILLCCDCFHHGRFVVGHSCLD 385

Query: 63  FMRVDSTRDYGELDGESWTDQETLLLLEAMEIYNENWNEIAEHVGTKSKAQCILHFLRLP 122
           F+RVD  + YG+ DG++WTDQETLLLLEA+E+YNENW +IA+HVG+KSKAQCILHFLRLP
Sbjct: 386 FVRVDPMKFYGDQDGDNWTDQETLLLLEAVELYNENWVQIADHVGSKSKAQCILHFLRLP 445

Query: 123 MEDGKLENINVPSMSLSSSVMNRDD--NGRLHHHL--NGDSAGPIHQSRESDSRLPFANS 178
           +EDG L+N+ V      S V N ++  NG  H     NGD  G   Q  +++ +LPF  S
Sbjct: 446 VEDGLLDNVEV------SGVTNTENPTNGYDHKGTDSNGDLPGYSEQGSDTEIKLPFVKS 499

Query: 179 GNPVMALVSFLASAVGPR 196
            NPVMALV+FLASAVGPR
Sbjct: 500 PNPVMALVAFLASAVGPR 517


>AT4G34430.3 | Symbols: CHB3, ATSWI3D | DNA-binding family protein |
           chr4:16461069-16464993 FORWARD LENGTH=983
          Length = 983

 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/137 (48%), Positives = 87/137 (63%), Gaps = 4/137 (2%)

Query: 19  ENHCNYCSRPLPVVYYQSQKEVDILLCTDCFHDGRFVIGHSSIDFMRVDSTRDYGELDGE 78
           E HCN CS       Y   K+ D  LCT+CF+ G+F    SS DF+ ++     G   G+
Sbjct: 307 EYHCNSCSADCSRKRYHCPKQADFDLCTECFNSGKFSSDMSSSDFILMEPAEAPGVGSGK 366

Query: 79  SWTDQETLLLLEAMEIYNENWNEIAEHVGTKSKAQCILHFLRLPMEDGKLENINVP---S 135
            WTDQETLLLLEA+EI+ ENWNEIAEHV TK+KAQC+LHFL++P+ED  L+ I+     S
Sbjct: 367 -WTDQETLLLLEALEIFKENWNEIAEHVATKTKAQCMLHFLQMPIEDAFLDQIDYKDPIS 425

Query: 136 MSLSSSVMNRDDNGRLH 152
              +   +++DDN  L 
Sbjct: 426 KDTTDLAVSKDDNSVLK 442


>AT4G34430.2 | Symbols: CHB3, ATSWI3D | DNA-binding family protein |
           chr4:16461069-16464993 FORWARD LENGTH=985
          Length = 985

 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/137 (48%), Positives = 87/137 (63%), Gaps = 4/137 (2%)

Query: 19  ENHCNYCSRPLPVVYYQSQKEVDILLCTDCFHDGRFVIGHSSIDFMRVDSTRDYGELDGE 78
           E HCN CS       Y   K+ D  LCT+CF+ G+F    SS DF+ ++     G   G+
Sbjct: 307 EYHCNSCSADCSRKRYHCPKQADFDLCTECFNSGKFSSDMSSSDFILMEPAEAPGVGSGK 366

Query: 79  SWTDQETLLLLEAMEIYNENWNEIAEHVGTKSKAQCILHFLRLPMEDGKLENINVP---S 135
            WTDQETLLLLEA+EI+ ENWNEIAEHV TK+KAQC+LHFL++P+ED  L+ I+     S
Sbjct: 367 -WTDQETLLLLEALEIFKENWNEIAEHVATKTKAQCMLHFLQMPIEDAFLDQIDYKDPIS 425

Query: 136 MSLSSSVMNRDDNGRLH 152
              +   +++DDN  L 
Sbjct: 426 KDTTDLAVSKDDNSVLK 442


>AT4G34430.1 | Symbols: CHB3, ATSWI3D | DNA-binding family protein |
           chr4:16461069-16464993 FORWARD LENGTH=985
          Length = 985

 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/137 (48%), Positives = 87/137 (63%), Gaps = 4/137 (2%)

Query: 19  ENHCNYCSRPLPVVYYQSQKEVDILLCTDCFHDGRFVIGHSSIDFMRVDSTRDYGELDGE 78
           E HCN CS       Y   K+ D  LCT+CF+ G+F    SS DF+ ++     G   G+
Sbjct: 307 EYHCNSCSADCSRKRYHCPKQADFDLCTECFNSGKFSSDMSSSDFILMEPAEAPGVGSGK 366

Query: 79  SWTDQETLLLLEAMEIYNENWNEIAEHVGTKSKAQCILHFLRLPMEDGKLENINVP---S 135
            WTDQETLLLLEA+EI+ ENWNEIAEHV TK+KAQC+LHFL++P+ED  L+ I+     S
Sbjct: 367 -WTDQETLLLLEALEIFKENWNEIAEHVATKTKAQCMLHFLQMPIEDAFLDQIDYKDPIS 425

Query: 136 MSLSSSVMNRDDNGRLH 152
              +   +++DDN  L 
Sbjct: 426 KDTTDLAVSKDDNSVLK 442


>AT4G34430.4 | Symbols: CHB3, ATSWI3D | DNA-binding family protein |
           chr4:16461069-16464993 FORWARD LENGTH=986
          Length = 986

 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/137 (48%), Positives = 87/137 (63%), Gaps = 4/137 (2%)

Query: 19  ENHCNYCSRPLPVVYYQSQKEVDILLCTDCFHDGRFVIGHSSIDFMRVDSTRDYGELDGE 78
           E HCN CS       Y   K+ D  LCT+CF+ G+F    SS DF+ ++     G   G+
Sbjct: 307 EYHCNSCSADCSRKRYHCPKQADFDLCTECFNSGKFSSDMSSSDFILMEPAEAPGVGSGK 366

Query: 79  SWTDQETLLLLEAMEIYNENWNEIAEHVGTKSKAQCILHFLRLPMEDGKLENINVP---S 135
            WTDQETLLLLEA+EI+ ENWNEIAEHV TK+KAQC+LHFL++P+ED  L+ I+     S
Sbjct: 367 -WTDQETLLLLEALEIFKENWNEIAEHVATKTKAQCMLHFLQMPIEDAFLDQIDYKDPIS 425

Query: 136 MSLSSSVMNRDDNGRLH 152
              +   +++DDN  L 
Sbjct: 426 KDTTDLAVSKDDNSVLK 442


>AT2G33610.1 | Symbols: ATSWI3B, CHB2, SWI3B | switch subunit 3 |
           chr2:14229023-14231149 FORWARD LENGTH=469
          Length = 469

 Score = 77.4 bits (189), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 90/178 (50%), Gaps = 12/178 (6%)

Query: 18  SENHCNYCSRPLPVVYYQSQKEVDILLCTDCFHDGRFVIGHSSIDFMRVDSTRDYGELDG 77
           ++ +CN C     +  +   K  D+ LC  C+    + +G +S +F RV+      E   
Sbjct: 171 AKRNCNGCKAICSIACFACDK-YDLTLCARCYVRSNYRVGINSSEFKRVE----ISEESK 225

Query: 78  ESWTDQETLLLLEAMEIYNENWNEIAEHVGTKSKAQCILHFLRLPM-EDGKLENINVPSM 136
             W+D+E LLLLEA+  Y ++W ++A HV  +++  C+  F++LP  E    E+ +   +
Sbjct: 226 PEWSDKEILLLLEAVMHYGDDWKKVASHVIGRTEKDCVSQFVKLPFGEQFVKESDSEDGL 285

Query: 137 SLSSSVMNRDDNGRLHHHLNGDSAGPIHQSRESDSRLPFANSGNPVMALVSFLASAVG 194
            +   +  +D +      ++ D + P  + + +    P A++ NP+MA  +FL++  G
Sbjct: 286 EMFDQI--KDSDIPESEGIDKDGSSPNKRIKLT----PLADASNPIMAQAAFLSALAG 337


>AT3G07740.1 | Symbols: ADA2A, ATADA2A, HAC10, HXA02, HXA2 | homolog
           of yeast ADA2 2A | chr3:2470014-2473062 REVERSE
           LENGTH=548
          Length = 548

 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 3/99 (3%)

Query: 22  CNYCSRPLP-VVYYQSQKEVDILLCTDCFHDGRFVIGHSSIDFMRVDSTRDYGELDGESW 80
           CNYC + L  +V ++    +D  LC +CF  G  +  H +    RV     +  L    W
Sbjct: 53  CNYCDKDLSGLVRFKCAVCMDFDLCVECFSVGVELNRHKNSHPYRVMDNLSFS-LVTSDW 111

Query: 81  TDQETLLLLEAMEIYN-ENWNEIAEHVGTKSKAQCILHF 118
              E +LLLEA+  Y   NW E+A+HVG+K+  +CI HF
Sbjct: 112 NADEEILLLEAIATYGFGNWKEVADHVGSKTTTECIKHF 150


>AT3G07740.3 | Symbols: ADA2A, ATADA2A, HAC10, HXA02, HXA2 | homolog
           of yeast ADA2 2A | chr3:2470014-2472635 REVERSE
           LENGTH=527
          Length = 527

 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 3/99 (3%)

Query: 22  CNYCSRPLP-VVYYQSQKEVDILLCTDCFHDGRFVIGHSSIDFMRVDSTRDYGELDGESW 80
           CNYC + L  +V ++    +D  LC +CF  G  +  H +    RV     +  L    W
Sbjct: 32  CNYCDKDLSGLVRFKCAVCMDFDLCVECFSVGVELNRHKNSHPYRVMDNLSFS-LVTSDW 90

Query: 81  TDQETLLLLEAMEIYNE-NWNEIAEHVGTKSKAQCILHF 118
              E +LLLEA+  Y   NW E+A+HVG+K+  +CI HF
Sbjct: 91  NADEEILLLEAIATYGFGNWKEVADHVGSKTTTECIKHF 129


>AT3G07740.4 | Symbols: ADA2A | homolog of yeast ADA2 2A |
           chr3:2470014-2473062 REVERSE LENGTH=555
          Length = 555

 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 53/106 (50%), Gaps = 10/106 (9%)

Query: 22  CNYCSRPLP-VVYYQSQKEVDILLCTDCFHDGRFVIGHSS-------IDFMRVDSTRDYG 73
           CNYC + L  +V ++    +D  LC +CF  G  +  H +       + F R      + 
Sbjct: 53  CNYCDKDLSGLVRFKCAVCMDFDLCVECFSVGVELNRHKNSHPYRVMVSFQRRADNLSFS 112

Query: 74  ELDGESWTDQETLLLLEAMEIYN-ENWNEIAEHVGTKSKAQCILHF 118
            L    W   E +LLLEA+  Y   NW E+A+HVG+K+  +CI HF
Sbjct: 113 -LVTSDWNADEEILLLEAIATYGFGNWKEVADHVGSKTTTECIKHF 157


>AT4G16420.1 | Symbols: ADA2B, PRZ1 | homolog of yeast ADA2 2B |
           chr4:9262805-9265775 REVERSE LENGTH=487
          Length = 487

 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 3/100 (3%)

Query: 21  HCNYCSRPLP-VVYYQSQKEVDILLCTDCFHDGRFVIGHSSIDFMRVDSTRDYGELDGES 79
           +C+YC + +   +  +     D  LC +C   G  +  H      RV     +  L    
Sbjct: 46  NCDYCQKDITGKIRIKCAVCPDFDLCIECMSVGAEITPHKCDHPYRVMGNLTFP-LICPD 104

Query: 80  WTDQETLLLLEAMEIYN-ENWNEIAEHVGTKSKAQCILHF 118
           W+  + +LLLE +EIY   NW E+AEHVGTKSK QC+ H+
Sbjct: 105 WSADDEMLLLEGLEIYGLGNWAEVAEHVGTKSKEQCLEHY 144


>AT4G16420.3 | Symbols: ADA2B, PRZ1 | homolog of yeast ADA2 2B |
           chr4:9262805-9265775 REVERSE LENGTH=486
          Length = 486

 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 3/100 (3%)

Query: 21  HCNYCSRPLP-VVYYQSQKEVDILLCTDCFHDGRFVIGHSSIDFMRVDSTRDYGELDGES 79
           +C+YC + +   +  +     D  LC +C   G  +  H      RV     +  L    
Sbjct: 46  NCDYCQKDITGKIRIKCAVCPDFDLCIECMSVGAEITPHKCDHPYRVMGNLTFP-LICPD 104

Query: 80  WTDQETLLLLEAMEIYN-ENWNEIAEHVGTKSKAQCILHF 118
           W+  + +LLLE +EIY   NW E+AEHVGTKSK QC+ H+
Sbjct: 105 WSADDEMLLLEGLEIYGLGNWAEVAEHVGTKSKEQCLEHY 144


>AT4G16420.2 | Symbols: ADA2B, PRZ1 | homolog of yeast ADA2 2B |
           chr4:9262805-9265775 REVERSE LENGTH=483
          Length = 483

 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 3/100 (3%)

Query: 21  HCNYCSRPLP-VVYYQSQKEVDILLCTDCFHDGRFVIGHSSIDFMRVDSTRDYGELDGES 79
           +C+YC + +   +  +     D  LC +C   G  +  H      RV     +  L    
Sbjct: 46  NCDYCQKDITGKIRIKCAVCPDFDLCIECMSVGAEITPHKCDHPYRVMGNLTFP-LICPD 104

Query: 80  WTDQETLLLLEAMEIYN-ENWNEIAEHVGTKSKAQCILHF 118
           W+  + +LLLE +EIY   NW E+AEHVGTKSK QC+ H+
Sbjct: 105 WSADDEMLLLEGLEIYGLGNWAEVAEHVGTKSKEQCLEHY 144


>AT3G07740.2 | Symbols: ADA2A, ATADA2A, HAC10, HXA02, HXA2 | homolog
           of yeast ADA2 2A | chr3:2470014-2472485 REVERSE
           LENGTH=477
          Length = 477

 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 2/80 (2%)

Query: 40  VDILLCTDCFHDGRFVIGHSSIDFMRVDSTRDYGELDGESWTDQETLLLLEAMEIYNE-N 98
           +D  LC +CF  G  +  H +    RV     +  L    W   E +LLLEA+  Y   N
Sbjct: 1   MDFDLCVECFSVGVELNRHKNSHPYRVMDNLSFS-LVTSDWNADEEILLLEAIATYGFGN 59

Query: 99  WNEIAEHVGTKSKAQCILHF 118
           W E+A+HVG+K+  +CI HF
Sbjct: 60  WKEVADHVGSKTTTECIKHF 79