Miyakogusa Predicted Gene

Lj1g3v0862930.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0862930.1 CUFF.26439.1
         (285 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G21700.1 | Symbols: ATSWI3C, CHB4, SWI3C | SWITCH/sucrose non...   154   4e-38
AT4G34430.3 | Symbols: CHB3, ATSWI3D | DNA-binding family protei...    59   3e-09
AT4G34430.2 | Symbols: CHB3, ATSWI3D | DNA-binding family protei...    59   3e-09
AT4G34430.1 | Symbols: CHB3, ATSWI3D | DNA-binding family protei...    59   3e-09
AT4G34430.4 | Symbols: CHB3, ATSWI3D | DNA-binding family protei...    55   5e-08
AT2G47620.1 | Symbols: ATSWI3A, CHB1, SWI3A | SWITCH/sucrose non...    50   2e-06

>AT1G21700.1 | Symbols: ATSWI3C, CHB4, SWI3C | SWITCH/sucrose
           nonfermenting 3C | chr1:7620156-7623978 REVERSE
           LENGTH=807
          Length = 807

 Score =  154 bits (390), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 105/268 (39%), Positives = 128/268 (47%), Gaps = 41/268 (15%)

Query: 1   MALVSFLASAVGPRXXXXXXXXXXXXXXEDGSGSTSQTEAPGHDNRTNAESVHARDGGPH 60
           MALV+FLASAVGPR              ED              +R  +E +     G  
Sbjct: 504 MALVAFLASAVGPRVAASCAHESLSVLSED--------------DRMKSEGMQ----GKE 545

Query: 61  GETANSINHNEDKAKMRSTRGQSEGRTTPLSAEKVXXXXXXXXXXXXXXXXLFADHEERE 120
               +  N  +D A   S++  +E +T PL  +KV                LFADHEERE
Sbjct: 546 ASLLDGENQQQDGAHKTSSQNGAEAQT-PLPQDKVMAAFRAGLSAAATKAKLFADHEERE 604

Query: 121 IQRLCANIVNHQLKRLELKLKQFAEIETLLMKECEQVERAKQRFGAERSRIISAHFGTAG 180
           IQRL ANIVNHQLKR+ELKLKQFAEIETLLMKECEQVE+ +QRF AER+R++SA FG+ G
Sbjct: 605 IQRLSANIVNHQLKRMELKLKQFAEIETLLMKECEQVEKTRQRFSAERARMLSARFGSPG 664

Query: 181 ATPPM--NASGVGPSVASNNGNNRXXXXXXXXXXXX--------GYGNSQPVHPHMSFAP 230
              P   N  G+  S   NN N+                     G+ N+  V   M F  
Sbjct: 665 GISPQTNNLQGMSLSTGGNNINSLMHQQHQQQQASATSQPSIIPGFSNNPQVQAQMHFMA 724

Query: 231 RPSM------------FGLGQRLPLSMI 246
           R               F  G RLPL+ I
Sbjct: 725 RQQQQQQQQQQQQQQAFSFGPRLPLNAI 752


>AT4G34430.3 | Symbols: CHB3, ATSWI3D | DNA-binding family protein |
           chr4:16461069-16464993 FORWARD LENGTH=983
          Length = 983

 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 54/90 (60%), Gaps = 5/90 (5%)

Query: 113 FADHEEREIQRLCANIVNHQLKRLELKLKQFAEIETLLMKECEQVERAKQRFGAERSRII 172
            A  EE +I++L  +++  QL +LE KL  F E E+L M+  EQ+ER++QR   ER++II
Sbjct: 847 LAKQEEDQIRQLSGSLIEKQLHKLEAKLSIFNEAESLTMRVREQLERSRQRLYHERAQII 906

Query: 173 SAHFGTAGATPPMNASGVGPS--VASNNGN 200
           +A  G     P M++    P+  +A+N  N
Sbjct: 907 AARLGVP---PSMSSKASLPTNRIAANFAN 933


>AT4G34430.2 | Symbols: CHB3, ATSWI3D | DNA-binding family protein |
           chr4:16461069-16464993 FORWARD LENGTH=985
          Length = 985

 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 54/90 (60%), Gaps = 5/90 (5%)

Query: 113 FADHEEREIQRLCANIVNHQLKRLELKLKQFAEIETLLMKECEQVERAKQRFGAERSRII 172
            A  EE +I++L  +++  QL +LE KL  F E E+L M+  EQ+ER++QR   ER++II
Sbjct: 849 LAKQEEDQIRQLSGSLIEKQLHKLEAKLSIFNEAESLTMRVREQLERSRQRLYHERAQII 908

Query: 173 SAHFGTAGATPPMNASGVGPS--VASNNGN 200
           +A  G     P M++    P+  +A+N  N
Sbjct: 909 AARLGVP---PSMSSKASLPTNRIAANFAN 935


>AT4G34430.1 | Symbols: CHB3, ATSWI3D | DNA-binding family protein |
           chr4:16461069-16464993 FORWARD LENGTH=985
          Length = 985

 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 54/90 (60%), Gaps = 5/90 (5%)

Query: 113 FADHEEREIQRLCANIVNHQLKRLELKLKQFAEIETLLMKECEQVERAKQRFGAERSRII 172
            A  EE +I++L  +++  QL +LE KL  F E E+L M+  EQ+ER++QR   ER++II
Sbjct: 849 LAKQEEDQIRQLSGSLIEKQLHKLEAKLSIFNEAESLTMRVREQLERSRQRLYHERAQII 908

Query: 173 SAHFGTAGATPPMNASGVGPS--VASNNGN 200
           +A  G     P M++    P+  +A+N  N
Sbjct: 909 AARLGVP---PSMSSKASLPTNRIAANFAN 935


>AT4G34430.4 | Symbols: CHB3, ATSWI3D | DNA-binding family protein |
           chr4:16461069-16464993 FORWARD LENGTH=986
          Length = 986

 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 6/91 (6%)

Query: 113 FADHEEREIQRLCANIV-NHQLKRLELKLKQFAEIETLLMKECEQVERAKQRFGAERSRI 171
            A  EE +I++L  +++   QL +LE KL  F E E+L M+  EQ+ER++QR   ER++I
Sbjct: 849 LAKQEEDQIRQLSGSLIEKQQLHKLEAKLSIFNEAESLTMRVREQLERSRQRLYHERAQI 908

Query: 172 ISAHFGTAGATPPMNASGVGPS--VASNNGN 200
           I+A  G     P M++    P+  +A+N  N
Sbjct: 909 IAARLGVP---PSMSSKASLPTNRIAANFAN 936


>AT2G47620.1 | Symbols: ATSWI3A, CHB1, SWI3A | SWITCH/sucrose
           nonfermenting 3A | chr2:19532034-19534251 FORWARD
           LENGTH=512
          Length = 512

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 41/65 (63%)

Query: 112 LFADHEEREIQRLCANIVNHQLKRLELKLKQFAEIETLLMKECEQVERAKQRFGAERSRI 171
           + AD EERE+++L A ++  QLK+L+ KLK   ++E+++ +E + +E  K+    ER  +
Sbjct: 434 ILADQEEREMEQLAATVIEQQLKKLQSKLKFLDDLESIMDEEEKVIEGVKETIIQERVSV 493

Query: 172 ISAHF 176
           +   F
Sbjct: 494 LQCAF 498