Miyakogusa Predicted Gene

Lj1g3v0861750.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0861750.1 tr|B1XIK5|B1XIK5_SYNP2 Iojap-related protein
OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 /
PR,44.76,2e-18,iojap_ybeB: iojap-like ribosome-associated
protein,Ribosome-associated, Iojap-like; SUBFAMILY NOT
NA,NODE_39953_length_1084_cov_115.934502.path1.1
         (243 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G12930.1 | Symbols:  | Lojap-related protein | chr3:4128465-4...   281   2e-76
AT1G67620.1 | Symbols:  | Lojap-related protein | chr1:25340585-...    51   5e-07

>AT3G12930.1 | Symbols:  | Lojap-related protein |
           chr3:4128465-4129616 FORWARD LENGTH=238
          Length = 238

 Score =  281 bits (720), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 146/240 (60%), Positives = 175/240 (72%), Gaps = 9/240 (3%)

Query: 4   STTLLSLAGASASVPASFPGELGHLETKCSPKPRKLFTCSCIKGLPLSKHNINGFNLKXX 63
           S+T L++AGA  +     P     +  K S       + SC+    LS      + L   
Sbjct: 3   SSTGLTVAGALLAGDFRLPAVSSLIPRKTSS------SLSCLSNRDLSSPYNCCWRLSRG 56

Query: 64  XXXNSLLS---FALGKEADDRFLSDVSKDTDDMYDELLNNYGKVVYTRKDRKPASAEVDD 120
               SL +   FA+GKEA+D FLS+VS+DTD+M+D+L N YGKVV+   D K  +AEVDD
Sbjct: 57  KILTSLSNSRKFAVGKEAEDGFLSNVSEDTDEMFDDLFNKYGKVVFRSTDVKSPTAEVDD 116

Query: 121 DAESLSFAVELATIASEVKAGDIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRMRDRA 180
           DAESL+FAVELA +AS+VKAGDI+VLFVKPLVYWTRFFIIATAFSRPQIDAIGSRMRD A
Sbjct: 117 DAESLAFAVELAKVASDVKAGDIKVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRMRDLA 176

Query: 181 EKKYGKIPTGDARPNSWTLLDFGDVVVHIFLPPQRAFYNLEEFYGNATPVELPFENQPPP 240
           EKKYGK+  GD +PNSWTLLDFGDVV+H+FLPPQR FYNLE+FYGNA  +ELPFE+Q  P
Sbjct: 177 EKKYGKVANGDVKPNSWTLLDFGDVVIHLFLPPQRTFYNLEDFYGNAMQIELPFEDQSQP 236


>AT1G67620.1 | Symbols:  | Lojap-related protein |
           chr1:25340585-25341770 FORWARD LENGTH=184
          Length = 184

 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 5/100 (5%)

Query: 130 ELATIASEVKAGDIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRMRDRAEKK-----Y 184
           E+  I ++VKA ++ V+      +W  F +IAT  S   +  I   +  RA++K     +
Sbjct: 49  EVEKILADVKADNVTVIPTHNHCFWADFTVIATGRSDWHLRNIAQALVYRAKQKQKGAKH 108

Query: 185 GKIPTGDARPNSWTLLDFGDVVVHIFLPPQRAFYNLEEFY 224
             +P+     + W ++D+G  VVH      R ++NLE  +
Sbjct: 109 VMLPSVQGYNSKWIVIDYGKFVVHALDEKARGYFNLESLW 148