Miyakogusa Predicted Gene

Lj1g3v0816040.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0816040.1 Non Chatacterized Hit- tr|H3DKS9|H3DKS9_TETNG
Uncharacterized protein (Fragment) OS=Tetraodon
nigrov,29.58,0.000000000007,TRAM_LAG1_CLN8,TRAM/LAG1/CLN8 homology
domain; TRAM, LAG1 and CLN8 homology domains.,TRAM/LAG1/CLN8
,CUFF.26375.1
         (276 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G21790.1 | Symbols:  | TRAM, LAG1 and CLN8 (TLC) lipid-sensin...   347   7e-96

>AT1G21790.1 | Symbols:  | TRAM, LAG1 and CLN8 (TLC) lipid-sensing
           domain containing protein | chr1:7654357-7655691 FORWARD
           LENGTH=288
          Length = 288

 Score =  347 bits (889), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 172/273 (63%), Positives = 208/273 (76%), Gaps = 7/273 (2%)

Query: 4   NKVEAFFSTTLILWLCSLSFHILFNHRTHLLYVLAGSFFYQTANSLIRFFFSKPTDPLFV 63
           N    FF  TL+LWL S+ F I FN RT LL+V+ G  F+Q  N ++R + S+  DP+FV
Sbjct: 14  NGAGQFFLATLLLWLVSVVFEIAFNLRTELLWVICGGCFFQLMNWVVRSWISR--DPIFV 71

Query: 64  NTAVSLLHSAVTSTSVIFILSKQWLSNGSSGMFDHSQLVEGTWPWAFEALSFSCGYFAYD 123
           NT+VSLLHS +TS SV+FIL  Q L+ G   MFDHS+LV GTW WA+ AL FSCGYFAYD
Sbjct: 72  NTSVSLLHSIITSASVVFILLNQCLAKGLDEMFDHSELVGGTWKWAYPALCFSCGYFAYD 131

Query: 124 QWDMLRFRLYNGWIPSILVHHLVLLICFTLALYRNVTINYLILTLICELHSIFLHVRKVR 183
           QWDML++RLY+G IPSILVHHLVLL+CFTLALYRNVTINYLILTLICE+HSIFLHVRK+R
Sbjct: 132 QWDMLQYRLYSGLIPSILVHHLVLLVCFTLALYRNVTINYLILTLICEMHSIFLHVRKLR 191

Query: 184 RMAGVRDAKSSIVKLEWFLNWVTFLVARFASHILITVKLIRDAHKFEKGVELPMALFGMA 243
           RMAG+RD+ +++VKLEW LNW  F+ AR   HILIT+KLI+DAHKF KGVELP+AL GMA
Sbjct: 192 RMAGIRDSNTALVKLEWVLNWTAFVFARCIPHILITIKLIKDAHKFGKGVELPLALSGMA 251

Query: 244 GMXXXXXXXXXXXXKAFKREKKSQQANHRQHHE 276
           GM             AF+RE+     +HR++ E
Sbjct: 252 GMNILNVGLGLDLFHAFRRER-----SHRRNQE 279