Miyakogusa Predicted Gene
- Lj1g3v0815000.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v0815000.1 tr|G7ZYM9|G7ZYM9_MEDTR FBD-associated F-box
protein OS=Medicago truncatula GN=MTR_076s0012 PE=4 SV=1,32.8,6e-19,no
description,NULL; LRR_2,Leucine-rich repeat 2,CUFF.26368.1
(198 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G13965.1 | Symbols: | Protein with RNI-like/FBD-like domains... 59 2e-09
AT3G26920.2 | Symbols: | FBD / Leucine Rich Repeat domains cont... 52 2e-07
AT5G56820.1 | Symbols: | F-box/RNI-like/FBD-like domains-contai... 50 9e-07
AT5G56420.2 | Symbols: | F-box/RNI-like/FBD-like domains-contai... 50 1e-06
AT5G56420.1 | Symbols: | F-box/RNI-like/FBD-like domains-contai... 50 1e-06
AT3G49040.1 | Symbols: | F-box/RNI-like superfamily protein | c... 48 4e-06
>AT4G13965.1 | Symbols: | Protein with RNI-like/FBD-like domains |
chr4:8066138-8067435 REVERSE LENGTH=376
Length = 376
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 94/212 (44%), Gaps = 38/212 (17%)
Query: 8 SDVHLPSLKVLHLQDLIFLERESLAKLLSGSPNLQDFKARGLRFDNYNT-DREFKTLPKL 66
S + L SL+ LHL + F + ES LLSG PNL++ F + T +L +L
Sbjct: 103 SSICLKSLRTLHLHYVDFKDNESALNLLSGCPNLENLVVHRYPFSSVKTYTIAVSSLKRL 162
Query: 67 L---------RADISATQTCFLFTEVVNNVQFLHLDKIP----SRLLLEPQWID------ 107
RA + ++V + F ++ +P + +++ Q I+
Sbjct: 163 TIYTSSTVDPRAGYVINSPSLTYLKIVGQIGFCLIENVPELVEASMIVSSQIINKNLLES 222
Query: 108 --------LDYSYI---FP---MFHNLTHVELVYQPYNSDWSQVVEFLHHCPKLQVLLIN 153
L++S + FP +F+ L ++EL+ + + L+ PKLQ+L +
Sbjct: 223 LTSVKRLFLEFSPLMIKFPAGSIFYQLVYLELLTHEAEC-LNLLTLMLNSSPKLQILKLL 281
Query: 154 QPNFHSFDSEQIGKIGDWQFPSTIPECILLHL 185
P + S+ + +GK W P +PEC+L HL
Sbjct: 282 SPKYQSWKKDVVGK---WNKPKIVPECLLFHL 310
>AT3G26920.2 | Symbols: | FBD / Leucine Rich Repeat domains
containing protein | chr3:9921241-9922429 FORWARD
LENGTH=301
Length = 301
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 87/198 (43%), Gaps = 20/198 (10%)
Query: 4 IPFSSDVHLPSLKVLHLQDLIFLERESLAKLLSGSPNLQDFKARGLRFDNYNTDREFKT- 62
+PF V L SL+ L+L ++ F+ ES+ LL+G +L++ TD KT
Sbjct: 62 VPFP--VCLKSLRTLNLHEVEFVNDESVVNLLAGCISLENLVIHQ------TTDLNVKTF 113
Query: 63 ---LPKLLRADISATQTCFLFTEVVNNVQFLHLDKIPSRLLLEPQWIDL-DYSYIFPMFH 118
+P L R + VVN +L RL L+ +++ I F+
Sbjct: 114 TIAVPSLQRLTVIVEYYEEFSVFVVNTPSLKYLKIEVQRLSLKVSLVEIFSLPPISNTFY 173
Query: 119 NLTHVEL-VYQPYNSDWSQVVEFLHHCPKLQVLLINQPNFHSFDSEQIGKIGDWQFPSTI 177
+LT++EL Y+P W+ + L P LQVL I F S++ W P +
Sbjct: 174 HLTYLELSTYKP--KWWNLLTLMLDTSPNLQVLKI----FDFMTSQEQRPWEKWNEPKNV 227
Query: 178 PECILLHLRRCYLNDYRG 195
PEC+LLHL Y G
Sbjct: 228 PECLLLHLETFVWTCYEG 245
>AT5G56820.1 | Symbols: | F-box/RNI-like/FBD-like
domains-containing protein | chr5:22976334-22977838
FORWARD LENGTH=435
Length = 435
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 95/223 (42%), Gaps = 43/223 (19%)
Query: 9 DVHLP----SLKVLHLQDLIFLERESLAKLLSGSPNLQD---FKARGLRFDNYNT----- 56
DV P SLK LHL + + RES LLS P L+D F R + +D N+
Sbjct: 150 DVSFPVCFRSLKSLHLTRVKYSCRESFTTLLSACPVLEDLDLFIGR-VHYDCLNSFTIWV 208
Query: 57 ---------DREFK--------TLPKLLRADISATQTCFLFTEVVNNVQFLHLD------ 93
D ++ ++P L I+ +CF F E + N+ H++
Sbjct: 209 PSLQRLSICDESYRFRSTTFEISVPSLKYLKIACQDSCFKFVEDMPNLVEAHVEANQHET 268
Query: 94 KIPSRLLLEPQWIDLDYSYIFPMFHNLTHVEL-VYQPYNSDWSQVVEFLHHCPKLQVLLI 152
K R L + + D +FH L ++EL +++ N D +++ L H P LQ L +
Sbjct: 269 KNLLRFLTSVERLK-DPDLTDRIFHQLLYLELHLHKRLNGD--RILSLLKHSPNLQTLKL 325
Query: 153 NQPNFHSFDSEQIGKIGDWQFPSTIPECILLHLRRCYLNDYRG 195
N+ S + + + P+++PEC+ HL Y G
Sbjct: 326 NEKPLRSIKDQPNISV---RKPNSVPECLTFHLETLEWQGYAG 365
>AT5G56420.2 | Symbols: | F-box/RNI-like/FBD-like
domains-containing protein | chr5:22850863-22852334
REVERSE LENGTH=422
Length = 422
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 89/224 (39%), Gaps = 42/224 (18%)
Query: 10 VHLPSLKVLHLQDLIFLERESLAKLLSGSPNLQDFKARGLRFDNYN----TDREFKTL-- 63
V SLK LHL D+ +L+ +SL +++S +L+D + DN T KTL
Sbjct: 151 VCFQSLKTLHLLDVKYLDDQSLPRIISSCSSLEDLVVQRCPGDNVKVVTVTAPSLKTLSL 210
Query: 64 ------------------PKLLRADISATQTCFLFTE-----VVNNVQFLH------LDK 94
PKL R DI F + E V NV ++ L
Sbjct: 211 HKSSQAFEGDDDGFLIDTPKLKRVDIEDYWGGFCYIENMPEVVEANVDVIYKNTEKLLGS 270
Query: 95 IPSRLLLEPQWIDLDYSY-IFPMFHNLTHVELVYQPYNSDWSQVVEFLHHCPKLQVLLIN 153
I S L I D +Y +F L H+EL W + + PKL+VL +
Sbjct: 271 ITSVKRLALCLITSDAAYPAGTIFSQLVHLELCTCAPRW-WDLLTRLIEDSPKLRVLKLR 329
Query: 154 QPNFHSFDSEQIGKIGDWQFPSTIPECILLHLRRCYLNDYRGTK 197
Q + S + W+ P+ +P+C+L HL Y G++
Sbjct: 330 QKHIRRAPSPR----ASWKQPA-LPKCLLFHLETFKWELYEGSQ 368
>AT5G56420.1 | Symbols: | F-box/RNI-like/FBD-like
domains-containing protein | chr5:22850863-22852334
REVERSE LENGTH=422
Length = 422
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 89/224 (39%), Gaps = 42/224 (18%)
Query: 10 VHLPSLKVLHLQDLIFLERESLAKLLSGSPNLQDFKARGLRFDNYN----TDREFKTL-- 63
V SLK LHL D+ +L+ +SL +++S +L+D + DN T KTL
Sbjct: 151 VCFQSLKTLHLLDVKYLDDQSLPRIISSCSSLEDLVVQRCPGDNVKVVTVTAPSLKTLSL 210
Query: 64 ------------------PKLLRADISATQTCFLFTE-----VVNNVQFLH------LDK 94
PKL R DI F + E V NV ++ L
Sbjct: 211 HKSSQAFEGDDDGFLIDTPKLKRVDIEDYWGGFCYIENMPEVVEANVDVIYKNTEKLLGS 270
Query: 95 IPSRLLLEPQWIDLDYSY-IFPMFHNLTHVELVYQPYNSDWSQVVEFLHHCPKLQVLLIN 153
I S L I D +Y +F L H+EL W + + PKL+VL +
Sbjct: 271 ITSVKRLALCLITSDAAYPAGTIFSQLVHLELCTCAPRW-WDLLTRLIEDSPKLRVLKLR 329
Query: 154 QPNFHSFDSEQIGKIGDWQFPSTIPECILLHLRRCYLNDYRGTK 197
Q + S + W+ P+ +P+C+L HL Y G++
Sbjct: 330 QKHIRRAPSPR----ASWKQPA-LPKCLLFHLETFKWELYEGSQ 368
>AT3G49040.1 | Symbols: | F-box/RNI-like superfamily protein |
chr3:18177676-18179339 FORWARD LENGTH=415
Length = 415
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 83/197 (42%), Gaps = 26/197 (13%)
Query: 6 FSSDVHLPSLKVLHLQDLIFLERESLAKLLSGSPNLQDFKARGLR--FDNYNTDREFKTL 63
F V L SL+ LHL + F ++S+ LL G P+L+D R + + +
Sbjct: 154 FPYRVCLKSLRKLHLYKVHFYGKDSVYNLLCGCPSLRDLIVHRYRECMETFTI-----AV 208
Query: 64 PKLLRADISATQTCFLFTEVVNNVQFLHLD----KIPSRLLLE--PQWI--------DLD 109
P L R I + + V+N +L+ K + L+E P+ D++
Sbjct: 209 PSLERLTIEDSGFGYGCCYVINAPSLKYLNIRRFKYLNSCLIEKAPELAEAKVSDVSDIE 268
Query: 110 YSYIFPMFHNLTHVELVYQPYNSDWSQVVEF-LHHCPKLQVLLINQPNFHSFDSEQIGKI 168
I + + + P +W ++ F L PKLQ+L + N S QIG+
Sbjct: 269 NENILESLTSAKRLSIHLSPL--EWWNLLTFMLEASPKLQILKLTDLNMSSTKGNQIGQ- 325
Query: 169 GDWQFPSTIPECILLHL 185
W P +PEC+L HL
Sbjct: 326 -KWIQPKCVPECLLFHL 341