Miyakogusa Predicted Gene

Lj1g3v0807620.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0807620.1 Non Chatacterized Hit- tr|I1KA90|I1KA90_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.23237 PE,89.83,0,GENERAL
TRANSCRIPTION FACTOR IIH SUBUNIT 3,NULL; TRANSCRIPTION INITIATION
FACTOR IIH (TFIIH), POLYPE,CUFF.26357.1
         (294 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G18340.1 | Symbols:  | basal transcription factor complex sub...   367   e-102

>AT1G18340.1 | Symbols:  | basal transcription factor complex
           subunit-related | chr1:6311612-6313734 REVERSE
           LENGTH=301
          Length = 301

 Score =  367 bits (943), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 186/286 (65%), Positives = 222/286 (77%), Gaps = 3/286 (1%)

Query: 1   MPSAPSKLYADDVSLLVVTLDTNPXXXXXXXXXXXXXLSQVLAFLNSILLLGQLNQVVVI 60
           MP+  SK Y+DDVSLLV+ LDTNP             LS VLAFLN++L L QLNQVVVI
Sbjct: 1   MPAIASKQYSDDVSLLVLLLDTNPLFWSTTSITFSQFLSHVLAFLNAVLGLNQLNQVVVI 60

Query: 61  ATGCNSCGYVYDSASDKNHAS--TTGT-MPALYSNLLRNLEQFVARDQQLAAANHAPGTV 117
           ATG +SC Y+YDS+   NH +  + GT MPA++ +LL+ LE+FV +D++L+    +   +
Sbjct: 61  ATGYSSCDYIYDSSLTSNHGNFESNGTGMPAIFGSLLKKLEEFVTKDEELSKEEVSEDRI 120

Query: 118 PXXXXXXXXXMALCYIQRAFRSGPMHPQPRILCLHGSADGPEQYVAIMNAIFSAQHSTVP 177
           P         MALCYIQR FRSG +HPQPRILCL GS DGPEQYVA+MN+IFSAQ   VP
Sbjct: 121 PSCLLSGSLSMALCYIQRVFRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRLMVP 180

Query: 178 IDSCYIGSNNSAFLQQASYITGGIYYRPPQLDGLFQYLSTVFATDLHSRAFLRLPKSVGV 237
           IDSCYIG  NSAFLQQASYITGG+++ P QLDGLFQYL+T+FATDLHSR F++LPK +GV
Sbjct: 181 IDSCYIGVQNSAFLQQASYITGGVHHTPKQLDGLFQYLTTIFATDLHSRGFVQLPKPIGV 240

Query: 238 DFRASCFCHKQTIDMGYVCSVCLSIFCEHHDKCSTCGSVFGQAQSD 283
           DFRASCFCHK+TIDMGY+CSVCLSIFCEHH KCSTCGSVFGQ++ D
Sbjct: 241 DFRASCFCHKKTIDMGYICSVCLSIFCEHHKKCSTCGSVFGQSKLD 286