Miyakogusa Predicted Gene

Lj1g3v0796420.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0796420.1 Non Chatacterized Hit- tr|B1XM46|B1XM46_SYNP2
Putative uncharacterized protein OS=Synechococcus sp.
,45.65,2e-16,DUF836,Glutaredoxin-like; seg,NULL; no
description,Thioredoxin-like fold;
Thioredoxin-like,Thioredox,CUFF.26350.1
         (139 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G08280.1 | Symbols:  | Thioredoxin superfamily protein | chr4...   150   3e-37

>AT4G08280.1 | Symbols:  | Thioredoxin superfamily protein |
           chr4:5230345-5231196 FORWARD LENGTH=126
          Length = 126

 Score =  150 bits (378), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 73/94 (77%), Positives = 79/94 (84%), Gaps = 1/94 (1%)

Query: 44  SRKLILYSKPGCCLCDGLKEKLHAAFLLS-GPDSLTDVHLQVRDITSNPEWESAYQYEIP 102
           +RKL+LYSKPGCCLCDGLKEKLHAAF LS GPDSL DV LQVRDIT+NPEWE AYQYEIP
Sbjct: 32  TRKLVLYSKPGCCLCDGLKEKLHAAFTLSTGPDSLNDVTLQVRDITTNPEWERAYQYEIP 91

Query: 103 VLAKVLSDGTEKTLPRLSPRLGVLHVQKKIAAAL 136
           VLAK  SDG E+ LPRLSPRL    +QKK+ AA 
Sbjct: 92  VLAKENSDGKEEVLPRLSPRLSAELIQKKLLAAF 125