Miyakogusa Predicted Gene

Lj1g3v0786340.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0786340.1 Non Chatacterized Hit- tr|E0CR89|E0CR89_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,84.21,0.0000000004,no description,YbaK/aminoacyl-tRNA
synthetase-associated
domain,NODE_82763_length_157_cov_20.656052.path2.1
         (38 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G44835.1 | Symbols:  | YbaK/aminoacyl-tRNA synthetase-associa...    62   6e-11
AT1G44835.2 | Symbols:  | YbaK/aminoacyl-tRNA synthetase-associa...    62   6e-11

>AT1G44835.1 | Symbols:  | YbaK/aminoacyl-tRNA
          synthetase-associated domain | chr1:16939909-16942337
          FORWARD LENGTH=307
          Length = 307

 Score = 62.4 bits (150), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 28/38 (73%), Positives = 33/38 (86%)

Query: 1  MGLSKEQLLARLQELQIEFSKYEHPVVLTVEAQAKYVG 38
          MG +K+QLL RLQEL+I++SKYEHP VLTVE QAKYV 
Sbjct: 1  MGFTKDQLLDRLQELEIDYSKYEHPPVLTVEEQAKYVS 38


>AT1G44835.2 | Symbols:  | YbaK/aminoacyl-tRNA
          synthetase-associated domain | chr1:16939909-16942337
          FORWARD LENGTH=308
          Length = 308

 Score = 62.4 bits (150), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 28/38 (73%), Positives = 33/38 (86%)

Query: 1  MGLSKEQLLARLQELQIEFSKYEHPVVLTVEAQAKYVG 38
          MG +K+QLL RLQEL+I++SKYEHP VLTVE QAKYV 
Sbjct: 1  MGFTKDQLLDRLQELEIDYSKYEHPPVLTVEEQAKYVS 38