Miyakogusa Predicted Gene

Lj1g3v0765570.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0765570.1 tr|A9P9Z6|A9P9Z6_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_1092563 PE=2
SV=1,69.12,2e-19,P-loop containing nucleoside triphosphate
hydrolases,NULL; Ras,Small GTPase superfamily; no
descript,gene.g30237.t1.1
         (66 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G03530.1 | Symbols: ATRAB ALPHA, ATRAB, ATRAB18B, ATRABC2A, R...    84   2e-17
AT3G09910.3 | Symbols: RABC2b | RAB GTPase homolog C2B | chr3:30...    73   5e-14
AT3G09910.2 | Symbols: RABC2b | RAB GTPase homolog C2B | chr3:30...    73   5e-14
AT3G09910.1 | Symbols: ATRAB18C, ATRABC2B, RABC2b | RAB GTPase h...    73   5e-14
AT1G43890.3 | Symbols: ATRAB18, ATRABC1, RAB18-1, RABC1, ATRAB-C...    65   8e-12
AT1G43890.2 | Symbols: ATRAB18, ATRABC1, RAB18-1, RABC1, ATRAB-C...    65   8e-12
AT1G43890.1 | Symbols: ATRAB18, ATRABC1, RAB18-1, RABC1, ATRAB-C...    65   8e-12

>AT5G03530.1 | Symbols: ATRAB ALPHA, ATRAB, ATRAB18B, ATRABC2A,
           RABC2A | RAB GTPase homolog C2A | chr5:885741-887061
           REVERSE LENGTH=210
          Length = 210

 Score = 84.0 bits (206), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/68 (61%), Positives = 52/68 (76%), Gaps = 2/68 (2%)

Query: 1   MALAKEHRCLFLECSAKTRENVQQCFNDLTLKILEVPSLREKGSVVVKRQ--KQKHLYET 58
           +ALAKE  C+FLECSA+TR+NV+QCF +L LKI+EVPSL E+GS  VKR   KQK  ++T
Sbjct: 143 IALAKELNCMFLECSARTRQNVEQCFEELALKIMEVPSLLEEGSSAVKRNILKQKPEHQT 202

Query: 59  PQSGGCCS 66
               GCCS
Sbjct: 203 NTQSGCCS 210


>AT3G09910.3 | Symbols: RABC2b | RAB GTPase homolog C2B |
           chr3:3036864-3038121 REVERSE LENGTH=205
          Length = 205

 Score = 72.8 bits (177), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 40/66 (60%), Positives = 46/66 (69%), Gaps = 4/66 (6%)

Query: 1   MALAKEHRCLFLECSAKTRENVQQCFNDLTLKILEVPSLREKGSVVVKRQKQKHLYETPQ 60
           MALAK+  CLF ECSA+TRENV  CF +L LKI+EVPSL E+GS  VKR+     Y   Q
Sbjct: 143 MALAKDLNCLFHECSARTRENVNGCFEELALKIMEVPSLLEEGSSSVKRKPD---YRAHQ 199

Query: 61  SGGCCS 66
            G CCS
Sbjct: 200 -GRCCS 204


>AT3G09910.2 | Symbols: RABC2b | RAB GTPase homolog C2B |
           chr3:3036864-3038121 REVERSE LENGTH=205
          Length = 205

 Score = 72.8 bits (177), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 40/66 (60%), Positives = 46/66 (69%), Gaps = 4/66 (6%)

Query: 1   MALAKEHRCLFLECSAKTRENVQQCFNDLTLKILEVPSLREKGSVVVKRQKQKHLYETPQ 60
           MALAK+  CLF ECSA+TRENV  CF +L LKI+EVPSL E+GS  VKR+     Y   Q
Sbjct: 143 MALAKDLNCLFHECSARTRENVNGCFEELALKIMEVPSLLEEGSSSVKRKPD---YRAHQ 199

Query: 61  SGGCCS 66
            G CCS
Sbjct: 200 -GRCCS 204


>AT3G09910.1 | Symbols: ATRAB18C, ATRABC2B, RABC2b | RAB GTPase
           homolog C2B | chr3:3036864-3038121 REVERSE LENGTH=205
          Length = 205

 Score = 72.8 bits (177), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 40/66 (60%), Positives = 46/66 (69%), Gaps = 4/66 (6%)

Query: 1   MALAKEHRCLFLECSAKTRENVQQCFNDLTLKILEVPSLREKGSVVVKRQKQKHLYETPQ 60
           MALAK+  CLF ECSA+TRENV  CF +L LKI+EVPSL E+GS  VKR+     Y   Q
Sbjct: 143 MALAKDLNCLFHECSARTRENVNGCFEELALKIMEVPSLLEEGSSSVKRKPD---YRAHQ 199

Query: 61  SGGCCS 66
            G CCS
Sbjct: 200 -GRCCS 204


>AT1G43890.3 | Symbols: ATRAB18, ATRABC1, RAB18-1, RABC1, ATRAB-C1,
           RAB18 | RAB GTPASE HOMOLOG B18 | chr1:16646934-16648395
           FORWARD LENGTH=212
          Length = 212

 Score = 65.1 bits (157), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 29/42 (69%), Positives = 34/42 (80%)

Query: 3   LAKEHRCLFLECSAKTRENVQQCFNDLTLKILEVPSLREKGS 44
            A+E+ CLFLECSAKTR NV+QCF +L LKILE PSL  +GS
Sbjct: 145 FAREYGCLFLECSAKTRVNVEQCFEELVLKILETPSLTAEGS 186


>AT1G43890.2 | Symbols: ATRAB18, ATRABC1, RAB18-1, RABC1, ATRAB-C1,
           RAB18 | RAB GTPASE HOMOLOG B18 | chr1:16646934-16648395
           FORWARD LENGTH=212
          Length = 212

 Score = 65.1 bits (157), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 29/42 (69%), Positives = 34/42 (80%)

Query: 3   LAKEHRCLFLECSAKTRENVQQCFNDLTLKILEVPSLREKGS 44
            A+E+ CLFLECSAKTR NV+QCF +L LKILE PSL  +GS
Sbjct: 145 FAREYGCLFLECSAKTRVNVEQCFEELVLKILETPSLTAEGS 186


>AT1G43890.1 | Symbols: ATRAB18, ATRABC1, RAB18-1, RABC1, ATRAB-C1,
           RAB18 | RAB GTPASE HOMOLOG B18 | chr1:16646934-16648395
           FORWARD LENGTH=212
          Length = 212

 Score = 65.1 bits (157), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 29/42 (69%), Positives = 34/42 (80%)

Query: 3   LAKEHRCLFLECSAKTRENVQQCFNDLTLKILEVPSLREKGS 44
            A+E+ CLFLECSAKTR NV+QCF +L LKILE PSL  +GS
Sbjct: 145 FAREYGCLFLECSAKTRVNVEQCFEELVLKILETPSLTAEGS 186