Miyakogusa Predicted Gene

Lj1g3v0762230.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0762230.1 Non Chatacterized Hit- tr|I3SY75|I3SY75_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,99.39,0,Ribosomal_S13,Ribosomal protein S13; bact_S13: 30S
ribosomal protein S13,Ribosomal protein S13, bact,CUFF.26266.1
         (164 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G14320.1 | Symbols:  | Ribosomal protein S13/S18 family | chr...   228   1e-60
AT5G14320.2 | Symbols:  | Ribosomal protein S13/S18 family | chr...   148   2e-36
AT1G77750.1 | Symbols:  | Ribosomal protein S13/S18 family | chr...   117   5e-27

>AT5G14320.1 | Symbols:  | Ribosomal protein S13/S18 family |
           chr5:4617839-4618772 REVERSE LENGTH=169
          Length = 169

 Score =  228 bits (582), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 111/154 (72%), Positives = 127/154 (82%), Gaps = 3/154 (1%)

Query: 1   MAQTLAMPVAPSLAAISNGHHH---FSSRVSLPVANTPKVQGLSIKSVRVGGVEIPNNKR 57
           MAQ +AMPVA SL+ I N         + ++LP +NTP  Q LSI+  RVGGVEIP NKR
Sbjct: 1   MAQMVAMPVAHSLSLICNWAKSNPLSRNTLALPASNTPNKQSLSIRCARVGGVEIPANKR 60

Query: 58  IEFSLQYIHGVGRVRARKILCDLNMDNKITKELSEEELITLRDEVSKYMIEGDLRRFNAT 117
           IE+SLQYIHG+GR RAR+IL DL M+NKITK+++EEELI LRDEVSKYMIEGDLRRFNA 
Sbjct: 61  IEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELIILRDEVSKYMIEGDLRRFNAL 120

Query: 118 NIKRLKDIQCYRGIRHIQGLPCRGQRTKNNCRTL 151
            IKRLK+IQCYRG+RHIQGLPCRGQRTKNNCRTL
Sbjct: 121 AIKRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTL 154


>AT5G14320.2 | Symbols:  | Ribosomal protein S13/S18 family |
           chr5:4618189-4618772 REVERSE LENGTH=128
          Length = 128

 Score =  148 bits (374), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 77/114 (67%), Positives = 91/114 (79%), Gaps = 3/114 (2%)

Query: 1   MAQTLAMPVAPSLAAISN-GHHHFSSR--VSLPVANTPKVQGLSIKSVRVGGVEIPNNKR 57
           MAQ +AMPVA SL+ I N    +  SR  ++LP +NTP  Q LSI+  RVGGVEIP NKR
Sbjct: 1   MAQMVAMPVAHSLSLICNWAKSNPLSRNTLALPASNTPNKQSLSIRCARVGGVEIPANKR 60

Query: 58  IEFSLQYIHGVGRVRARKILCDLNMDNKITKELSEEELITLRDEVSKYMIEGDL 111
           IE+SLQYIHG+GR RAR+IL DL M+NKITK+++EEELI LRDEVSKYMIEGDL
Sbjct: 61  IEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELIILRDEVSKYMIEGDL 114


>AT1G77750.1 | Symbols:  | Ribosomal protein S13/S18 family |
           chr1:29230346-29231490 REVERSE LENGTH=154
          Length = 154

 Score =  117 bits (292), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 52/113 (46%), Positives = 79/113 (69%)

Query: 38  QGLSIKSVRVGGVEIPNNKRIEFSLQYIHGVGRVRARKILCDLNMDNKITKELSEEELIT 97
            GL ++ +RVG  E+PNNK ++  LQ ++G+GR ++ ++LC L + NK+ ++L+ +ELI 
Sbjct: 25  HGLRVQGIRVGNAEVPNNKPLKTGLQEVYGIGRRKSHQVLCHLGITNKLARDLTGKELID 84

Query: 98  LRDEVSKYMIEGDLRRFNATNIKRLKDIQCYRGIRHIQGLPCRGQRTKNNCRT 150
           LR+EV ++    +LRR   + I+RL ++ CYRG RH  GLPCRGQRT  N RT
Sbjct: 85  LREEVGQHQHGDELRRRVGSEIQRLVEVDCYRGSRHRHGLPCRGQRTSTNART 137