Miyakogusa Predicted Gene

Lj1g3v0749130.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0749130.1 Non Chatacterized Hit- tr|C5WNT3|C5WNT3_SORBI
Putative uncharacterized protein Sb01g010880 OS=Sorghu,29.87,0.021,
,CUFF.26256.1
         (217 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G36940.1 | Symbols:  | unknown protein; Has 21 Blast hits to ...   104   4e-23
AT1G36940.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   104   4e-23

>AT1G36940.1 | Symbols:  | unknown protein; Has 21 Blast hits to 21
           proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa
           - 0; Fungi - 0; Plants - 21; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr1:14004158-14004706 FORWARD LENGTH=182
          Length = 182

 Score =  104 bits (260), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 78/192 (40%), Positives = 106/192 (55%), Gaps = 32/192 (16%)

Query: 12  LQFYHQKTMFLPILCSRPSIKDVNLPRCRGLQNSSFD--DPLSPRIGCMGQVKRNNKIAG 69
           +QF  Q+  FLP+LCSRPSIK+V LP  +  Q+ S+   DPLSP+I C+GQVKR+NKI G
Sbjct: 9   VQF--QRPTFLPMLCSRPSIKNVTLP-AKSHQDDSYQQADPLSPKISCIGQVKRSNKITG 65

Query: 70  VPTSSHSHRLTLTATKSTTPVVKYSKLKKLFSGKNLIISTPKTTTAVPNSNINRCRTRQQ 129
            PT++ +        +      +Y KLK+LFSGKNL  S P TTT   +        R +
Sbjct: 66  FPTTTTTSTSITPVAQH-----RYFKLKRLFSGKNLSFSAPTTTTTRTSR------GRIR 114

Query: 130 QLAAGNNSAGVPKHKRCDQNQNQNLVGISIEEMDPPLPVIKKVPNLEEGSKVENSLWKRR 189
           +   GN    V                I + E+DPPLPV+KK  +   G K   +LWKRR
Sbjct: 115 KEEFGNKKIDV----------------IDVAELDPPLPVVKKTHDGGAGDKAAENLWKRR 158

Query: 190 NNGPAIKGLQLQ 201
           + G  ++ LQ+Q
Sbjct: 159 SGGCQLRSLQIQ 170


>AT1G36940.2 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 8 plant
           structures; EXPRESSED DURING: 7 growth stages. |
           chr1:14004158-14005436 FORWARD LENGTH=219
          Length = 219

 Score =  104 bits (260), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/188 (40%), Positives = 103/188 (54%), Gaps = 30/188 (15%)

Query: 16  HQKTMFLPILCSRPSIKDVNLPRCRGLQNSSFD--DPLSPRIGCMGQVKRNNKIAGVPTS 73
            Q+  FLP+LCSRPSIK+V LP  +  Q+ S+   DPLSP+I C+GQVKR+NKI G PT+
Sbjct: 11  FQRPTFLPMLCSRPSIKNVTLP-AKSHQDDSYQQADPLSPKISCIGQVKRSNKITGFPTT 69

Query: 74  SHSHRLTLTATKSTTPVVKYSKLKKLFSGKNLIISTPKTTTAVPNSNINRCRTRQQQLAA 133
           + +        +      +Y KLK+LFSGKNL  S P TTT   +        R ++   
Sbjct: 70  TTTSTSITPVAQH-----RYFKLKRLFSGKNLSFSAPTTTTTRTSR------GRIRKEEF 118

Query: 134 GNNSAGVPKHKRCDQNQNQNLVGISIEEMDPPLPVIKKVPNLEEGSKVENSLWKRRNNGP 193
           GN    V                I + E+DPPLPV+KK  +   G K   +LWKRR+ G 
Sbjct: 119 GNKKIDV----------------IDVAELDPPLPVVKKTHDGGAGDKAAENLWKRRSGGC 162

Query: 194 AIKGLQLQ 201
            ++ LQ+Q
Sbjct: 163 QLRSLQIQ 170