Miyakogusa Predicted Gene
- Lj1g3v0738020.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v0738020.1 tr|G7J467|G7J467_MEDTR Serine
hydroxymethyltransferase OS=Medicago truncatula GN=MTR_3g073470 PE=3
S,79.07,0,seg,NULL; SUBFAMILY NOT NAMED,NULL; SERINE
HYDROXYMETHYLTRANSFERASE,Serine hydroxymethyltransferase;,CUFF.26232.1
(554 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G36370.1 | Symbols: SHM7 | serine hydroxymethyltransferase 7 ... 762 0.0
AT1G22020.1 | Symbols: SHM6 | serine hydroxymethyltransferase 6 ... 758 0.0
AT4G13930.1 | Symbols: SHM4 | serine hydroxymethyltransferase 4 ... 619 e-177
AT4G13890.1 | Symbols: SHM5, EDA36, EDA37 | Pyridoxal phosphate ... 601 e-172
AT4G37930.1 | Symbols: SHM1, STM, SHMT1 | serine transhydroxymet... 498 e-141
AT5G26780.1 | Symbols: SHM2 | serine hydroxymethyltransferase 2 ... 480 e-136
AT4G32520.2 | Symbols: SHM3 | serine hydroxymethyltransferase 3 ... 478 e-135
AT4G32520.1 | Symbols: SHM3, AtSHMT3 | serine hydroxymethyltrans... 478 e-135
AT5G26780.2 | Symbols: SHM2 | serine hydroxymethyltransferase 2 ... 470 e-132
AT5G26780.3 | Symbols: SHM2 | serine hydroxymethyltransferase 2 ... 470 e-132
>AT1G36370.1 | Symbols: SHM7 | serine hydroxymethyltransferase 7 |
chr1:13696240-13698576 REVERSE LENGTH=598
Length = 598
Score = 762 bits (1968), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/505 (74%), Positives = 431/505 (85%), Gaps = 11/505 (2%)
Query: 56 FMGRPMCLKRHIEEEEPQQ-QQSCFPAKRVAVDSAAEARRG----WGNQPLCVADPEIHE 110
+G MCLKR + + P QS P + DS E+RR WG+QP+ +ADP+IHE
Sbjct: 90 ILGHHMCLKR--QRDCPLLLTQSKHPKRSSIGDSDLESRRAAVRAWGDQPIHLADPDIHE 147
Query: 111 IMEKEKWRQFRGIELIASENFVCRAVMEALGSHLTNKYSEGMPGAKYYTGNQYIDQIEFL 170
+MEKEK RQ RGIELIASENFVCRAVMEALGSHLTNKYSEGMPGA+YYTGNQYIDQIE L
Sbjct: 148 LMEKEKQRQVRGIELIASENFVCRAVMEALGSHLTNKYSEGMPGARYYTGNQYIDQIENL 207
Query: 171 CCKRALMAFDLDSNNWGVNVQPYSCTSANFAVFTGLLHPGDRIMGLDSPSGGHLSHGYYT 230
C +RAL AF L+S+ WGVNVQPYSCTSANFAV+TGLL PG+RIMGLDSPSGGH+SHGY T
Sbjct: 208 CIERALTAFGLESDKWGVNVQPYSCTSANFAVYTGLLLPGERIMGLDSPSGGHMSHGYCT 267
Query: 231 LGGKKVAAASIFFQTLAYKVNPQTGYIDYDKLEEKAVDFRPKILICGGSSYPREWDYGRF 290
GGKK++AASIFF++ YKVNPQTGYIDYDKLE+KA+D+RPKILICGGSSYPR+WD+ R
Sbjct: 268 PGGKKISAASIFFESFPYKVNPQTGYIDYDKLEDKALDYRPKILICGGSSYPRDWDFARV 327
Query: 291 RQIADKCGAVLMCDMAHISGLVAAKEGVSPFNYCDIVTSTTHKSLRGPRGGIIFYRKGPR 350
RQIADKCGAVLMCDMAHISGLVA KE +PF++CDIVTSTTHK LRGPRGGIIFYR+GP+
Sbjct: 328 RQIADKCGAVLMCDMAHISGLVATKECSNPFDHCDIVTSTTHKGLRGPRGGIIFYRRGPK 387
Query: 351 PRKQGSVHNHGD-DINYDFEEKINFALYPSLQGGPHNNHIAALAISFKQVATPEYKAYMQ 409
RKQG +H D +YD EEKINFA++PSLQGGPHNNHIAALAI+ KQVATPEYKAY+Q
Sbjct: 388 IRKQGHHSSHCDTSTHYDLEEKINFAVFPSLQGGPHNNHIAALAIALKQVATPEYKAYIQ 447
Query: 410 QVKKNAQALASALMRRKCRLVTDGTDNHLLLWDLTVLGLIDRNYEKVCEACHITINKCAI 469
Q+KKNAQALA+AL+RRKCRLVT GTDNHLLLWDLT +GL + YEKVCE CHIT+NK AI
Sbjct: 448 QMKKNAQALAAALLRRKCRLVTGGTDNHLLLWDLTPMGLTGKVYEKVCEMCHITLNKTAI 507
Query: 470 Y---GSISSGGVRIGTPAMTTRGCLENDFETIADFLLRAAEITSIIQREHGKSCKEFLKG 526
+ G+IS GGVRIGTPAMTTRGC+E+DFET+ADFL++AA+ITS +QREHGKS KEF+K
Sbjct: 508 FGDNGTISPGGVRIGTPAMTTRGCIESDFETMADFLIKAAQITSALQREHGKSHKEFVKS 567
Query: 527 LQNNKDIAELRNRVETFSSQFAMPG 551
L NKDIAELRNRVE F+ Q+ MP
Sbjct: 568 LCTNKDIAELRNRVEAFALQYEMPA 592
>AT1G22020.1 | Symbols: SHM6 | serine hydroxymethyltransferase 6 |
chr1:7754599-7757087 FORWARD LENGTH=599
Length = 599
Score = 758 bits (1957), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/507 (72%), Positives = 421/507 (83%), Gaps = 9/507 (1%)
Query: 56 FMGRPMCLKRHIEEEEPQQQQSCFPAKRVAVDSAAEARRG----WGNQPLCVADPEIHEI 111
+G PM LKR S P KR VDS E+RR WGNQ + ADPEIHE
Sbjct: 94 LLGHPMKLKRG-RGGNSYSLASSSPCKRFVVDSGIESRRAVVRAWGNQSIEEADPEIHEF 152
Query: 112 MEKEKWRQFRGIELIASENFVCRAVMEALGSHLTNKYSEGMPGAKYYTGNQYIDQIEFLC 171
MEKEK RQFRGIELIASENFVCRAVMEALGSHLTNKYSEGMPGA+YYTGNQYIDQIE LC
Sbjct: 153 MEKEKQRQFRGIELIASENFVCRAVMEALGSHLTNKYSEGMPGARYYTGNQYIDQIEILC 212
Query: 172 CKRALMAFDLDSNNWGVNVQPYSCTSANFAVFTGLLHPGDRIMGLDSPSGGHLSHGYYTL 231
+RAL AF L+ WGVNVQPYSCTSANFAVFTGLL PG+RIMGLDSPSGGH+SHGYYT
Sbjct: 213 QERALAAFGLNHEKWGVNVQPYSCTSANFAVFTGLLMPGERIMGLDSPSGGHMSHGYYTP 272
Query: 232 GGKKVAAASIFFQTLAYKVNPQTGYIDYDKLEEKAVDFRPKILICGGSSYPREWDYGRFR 291
GGKKV+ ASIFF++ YKV+P+TGYIDYDKLEEKA+D+RPKILICGGSSYPR+W++ RFR
Sbjct: 273 GGKKVSGASIFFESFPYKVDPRTGYIDYDKLEEKALDYRPKILICGGSSYPRDWEFPRFR 332
Query: 292 QIADKCGAVLMCDMAHISGLVAAKEGVSPFNYCDIVTSTTHKSLRGPRGGIIFYRKGPRP 351
IADKCGAVLM DMA ISGLVAAKE +PF+YCDIVTSTTHKSLRGPRGGIIFY++G +P
Sbjct: 333 HIADKCGAVLMFDMAQISGLVAAKESPNPFDYCDIVTSTTHKSLRGPRGGIIFYKRGLKP 392
Query: 352 RKQGSVHNHGD-DINYDFEEKINFALYPSLQGGPHNNHIAALAISFKQVATPEYKAYMQQ 410
+KQ NH + +I YDFEEKINF+++PSLQGGPHNNHIAALAI+ KQ A+PEYK YM+Q
Sbjct: 393 KKQSINLNHCESNIQYDFEEKINFSVFPSLQGGPHNNHIAALAIALKQAASPEYKLYMRQ 452
Query: 411 VKKNAQALASALMRRKCRLVTDGTDNHLLLWDLTVLGLIDRNYEKVCEACHITINKCAIY 470
VKKNA+ALASAL+ RKC+L+T GTDNHLLLWDLT LGL + YEKVCE CHIT+NK AI+
Sbjct: 453 VKKNAKALASALISRKCKLITGGTDNHLLLWDLTPLGLTGKVYEKVCEMCHITVNKVAIF 512
Query: 471 ---GSISSGGVRIGTPAMTTRGCLENDFETIADFLLRAAEITSIIQREHGKSCKEFLKGL 527
G IS GGVRIG+PAMT+RGCLE +FET+ADFL RAA+I S QREHGK KE LK +
Sbjct: 513 SENGVISPGGVRIGSPAMTSRGCLEPEFETMADFLYRAAQIASAAQREHGKLQKEPLKSI 572
Query: 528 QNNKDIAELRNRVETFSSQFAMPGFDI 554
+ K+IA+LRN+VE F++QFAMP FD+
Sbjct: 573 YHCKEIADLRNQVEAFATQFAMPAFDM 599
>AT4G13930.1 | Symbols: SHM4 | serine hydroxymethyltransferase 4 |
chr4:8048013-8050021 REVERSE LENGTH=471
Length = 471
Score = 619 bits (1597), Expect = e-177, Method: Compositional matrix adjust.
Identities = 293/465 (63%), Positives = 360/465 (77%), Gaps = 7/465 (1%)
Query: 91 EARRGWGNQPLCVADPEIHEIMEKEKWRQFRGIELIASENFVCRAVMEALGSHLTNKYSE 150
E WGN L DPEIH+++EKEK RQ RGIELIASENF AV+EALGS LTNKYSE
Sbjct: 2 EPVSSWGNTSLVSVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSE 61
Query: 151 GMPGAKYYTGNQYIDQIEFLCCKRALMAFDLDSNNWGVNVQPYSCTSANFAVFTGLLHPG 210
G+PG +YY GN++ID+IE LC RAL AF D WGVNVQPYS + ANFA +T LL P
Sbjct: 62 GIPGNRYYGGNEFIDEIENLCRSRALEAFHCDPAAWGVNVQPYSGSPANFAAYTALLQPH 121
Query: 211 DRIMGLDSPSGGHLSHGYYTLGGKKVAAASIFFQTLAYKVNPQTGYIDYDKLEEKAVDFR 270
DRIMGLD PSGGHL+HGYYT GGKK++A SI+F++L YKVN TGYIDYDKLEEKA+DFR
Sbjct: 122 DRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNFTTGYIDYDKLEEKALDFR 181
Query: 271 PKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLVAAKEGVSPFNYCDIVTST 330
PK+LICGGS+YPR+WDY RFR IADK GA+L+CDMAHISGLVAA+E +PF YCD+VT+T
Sbjct: 182 PKLLICGGSAYPRDWDYARFRAIADKVGALLLCDMAHISGLVAAQEAANPFEYCDVVTTT 241
Query: 331 THKSLRGPRGGIIFYRKGPRPRKQGSVHNHGDDINYDFEEKINFALYPSLQGGPHNNHIA 390
THKSLRGPR G+IFYRKGP+P K+G + YDFE+KINFA++P+LQGGPHN+ I
Sbjct: 242 THKSLRGPRAGMIFYRKGPKPPKKG----QPEGAVYDFEDKINFAVFPALQGGPHNHQIG 297
Query: 391 ALAISFKQVATPEYKAYMQQVKKNAQALASALMRRKCRLVTDGTDNHLLLWDLTVLGLID 450
ALA++ KQ TP +K Y +QVK NA AL + LM + ++VT+GT+NHL+LWDL LGL
Sbjct: 298 ALAVALKQANTPGFKVYAKQVKANAVALGNYLMSKGYQIVTNGTENHLVLWDLRPLGLTG 357
Query: 451 RNYEKVCEACHITINKCAIYG---SISSGGVRIGTPAMTTRGCLENDFETIADFLLRAAE 507
EK+C+ C IT+NK A++G +++ GGVRIG PAMT+RG +E DFE I +FL RA
Sbjct: 358 NKVEKLCDLCSITLNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEKDFEQIGEFLSRAVT 417
Query: 508 ITSIIQREHGKSCKEFLKGLQNNKDIAELRNRVETFSSQFAMPGF 552
+T IQ+ +GK K+F KGL NNKD+ +L+ VE FS+ + MPGF
Sbjct: 418 LTLDIQKTYGKLLKDFNKGLVNNKDLDQLKADVEKFSASYEMPGF 462
>AT4G13890.1 | Symbols: SHM5, EDA36, EDA37 | Pyridoxal phosphate
(PLP)-dependent transferases superfamily protein |
chr4:8032146-8033718 REVERSE LENGTH=470
Length = 470
Score = 601 bits (1549), Expect = e-172, Method: Compositional matrix adjust.
Identities = 288/467 (61%), Positives = 349/467 (74%), Gaps = 7/467 (1%)
Query: 91 EARRGWGNQPLCVADPEIHEIMEKEKWRQFRGIELIASENFVCRAVMEALGSHLTNKYSE 150
E WGN L DPEI++++EKEK RQ RGIELIA+ENF AVMEALGS LTNKYSE
Sbjct: 2 EPVYSWGNTHLDFVDPEIYDLIEKEKHRQCRGIELIAAENFTSVAVMEALGSCLTNKYSE 61
Query: 151 GMPGAKYYTGNQYIDQIEFLCCKRALMAFDLDSNNWGVNVQPYSCTSANFAVFTGLLHPG 210
GMPG +YY G ++ID+IE LC R+L AF + WGVNVQPYS + ANFA +T LL P
Sbjct: 62 GMPGNRYYGGTEFIDEIESLCRSRSLEAFHCNPEKWGVNVQPYSGSPANFAAYTALLQPH 121
Query: 211 DRIMGLDSPSGGHLSHGYYTLGGKKVAAASIFFQTLAYKVNPQTGYIDYDKLEEKAVDFR 270
DRIMGLD PSGGH++HGYY+ GGK ++A SI+F+ L YKV+ +TGYIDYDKLEEKA+DFR
Sbjct: 122 DRIMGLDLPSGGHITHGYYSSGGKNISATSIYFENLPYKVDSKTGYIDYDKLEEKAMDFR 181
Query: 271 PKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLVAAKEGVSPFNYCDIVTST 330
PK++ICGG+SYPREWDY RFR +ADK GA L+CDMAH S LVAA+E PF YCD+VT++
Sbjct: 182 PKLIICGGTSYPREWDYARFRAVADKVGAFLLCDMAHNSALVAAQEAADPFEYCDVVTTS 241
Query: 331 THKSLRGPRGGIIFYRKGPRPRKQGSVHNHGDDINYDFEEKINFALYPSLQGGPHNNHIA 390
THKSLRGPR G+IFYRKGP+P K+G YDF+ KIN A++P+LQ GPHNN I
Sbjct: 242 THKSLRGPRAGMIFYRKGPKPAKKGQPEGE----VYDFDAKINSAVFPALQSGPHNNKIG 297
Query: 391 ALAISFKQVATPEYKAYMQQVKKNAQALASALMRRKCRLVTDGTDNHLLLWDLTVLGLID 450
ALA++ KQV P +K Y +QVK NA LAS L+ + LVTDGTDNHL+LWDL LGL
Sbjct: 298 ALAVALKQVMAPSFKVYAKQVKANAACLASYLINKGYTLVTDGTDNHLILWDLRPLGLTG 357
Query: 451 RNYEKVCEACHITINKCAIYGSIS---SGGVRIGTPAMTTRGCLENDFETIADFLLRAAE 507
EKVCE C+IT+N+ A++G S GGVRIGTPAMT+RG +E DFE I +FL RA
Sbjct: 358 NKVEKVCELCYITLNRNAVFGDTSFLAPGGVRIGTPAMTSRGLVEKDFEKIGEFLHRAVT 417
Query: 508 ITSIIQREHGKSCKEFLKGLQNNKDIAELRNRVETFSSQFAMPGFDI 554
IT IQ ++GK K+F KGL NNK+I E++ VE F+ F MPGF I
Sbjct: 418 ITLDIQEQYGKVMKDFNKGLVNNKEIDEIKADVEEFTYDFDMPGFFI 464
>AT4G37930.1 | Symbols: SHM1, STM, SHMT1 | serine
transhydroxymethyltransferase 1 | chr4:17831891-17834742
REVERSE LENGTH=517
Length = 517
Score = 498 bits (1283), Expect = e-141, Method: Compositional matrix adjust.
Identities = 247/488 (50%), Positives = 331/488 (67%), Gaps = 19/488 (3%)
Query: 77 SCFPAKRVAVDSAAEARRGWGNQ---PLCVADPEIHEIMEKEKWRQFRGIELIASENFVC 133
S P++ AVD +R W Q PL DPEI +I+E EK RQ++G+ELI SENF
Sbjct: 30 SSLPSE--AVDEKERSRVTWPKQLNAPLEEVDPEIADIIEHEKARQWKGLELIPSENFTS 87
Query: 134 RAVMEALGSHLTNKYSEGMPGAKYYTGNQYIDQIEFLCCKRALMAFDLDSNNWGVNVQPY 193
+VM+A+GS +TNKYSEG PGA+YY GN+YID E LC KRAL AF LD WGVNVQP
Sbjct: 88 VSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPEKWGVNVQPL 147
Query: 194 SCTSANFAVFTGLLHPGDRIMGLDSPSGGHLSHGYYTLGGKKVAAASIFFQTLAYKVNPQ 253
S + ANF V+T LL P +RIM LD P GGHLSHGY T KK++A SIFF+T+ Y+++
Sbjct: 148 SGSPANFHVYTALLKPHERIMALDLPHGGHLSHGYQT-DTKKISAVSIFFETMPYRLDES 206
Query: 254 TGYIDYDKLEEKAVDFRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLVA 313
TGYIDYD++E+ A FRPK+++ G S+Y R +DY R R++ +K AV++ DMAHISGLVA
Sbjct: 207 TGYIDYDQMEKSATLFRPKLIVAGASAYARLYDYARIRKVCNKQKAVMLADMAHISGLVA 266
Query: 314 AKEGVSPFNYCDIVTSTTHKSLRGPRGGIIFYRKGPRPRKQGSVHNHGDDINYDFEEKIN 373
A SPF+Y D+VT+TTHKSLRGPRG +IF+RKG + ++ G ++ YDFE+KIN
Sbjct: 267 ANVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVK-----EINKQGKEVLYDFEDKIN 321
Query: 374 FALYPSLQGGPHNNHIAALAISFKQVATPEYKAYMQQVKKNAQALASALMRRKCRLVTDG 433
A++P LQGGPHN+ I LA++ KQ T EYKAY +QV N+ A LM R LV+ G
Sbjct: 322 QAVFPGLQGGPHNHTITGLAVALKQATTSEYKAYQEQVLSNSAKFAQTLMERGYELVSGG 381
Query: 434 TDNHLLLWDLTVLGLIDRNYEKVCEACHITINKCAIYGSISS---GGVRIGTPAMTTRGC 490
TDNHL+L +L G+ EKV EA HI NK + G +S+ GG+R+GTPA+T+RG
Sbjct: 382 TDNHLVLVNLKPKGIDGSRVEKVLEAVHIASNKNTVPGDVSAMVPGGIRMGTPALTSRGF 441
Query: 491 LENDFETIADFLLRAAEITSIIQRE-HGKSCKEFLKGLQNN----KDIAELRNRVETFSS 545
+E DF +A++ +A I ++ E G K+F+ ++++ +IA+LR+ VE F+
Sbjct: 442 VEEDFAKVAEYFDKAVTIALKVKSEAQGTKLKDFVSAMESSSTIQSEIAKLRHEVEEFAK 501
Query: 546 QFAMPGFD 553
QF GF+
Sbjct: 502 QFPTIGFE 509
>AT5G26780.1 | Symbols: SHM2 | serine hydroxymethyltransferase 2 |
chr5:9418299-9421725 FORWARD LENGTH=517
Length = 517
Score = 480 bits (1236), Expect = e-136, Method: Compositional matrix adjust.
Identities = 238/480 (49%), Positives = 325/480 (67%), Gaps = 17/480 (3%)
Query: 85 AVDSAAEARRGWGNQ---PLCVADPEIHEIMEKEKWRQFRGIELIASENFVCRAVMEALG 141
A+ + ++R W Q L DPE+ +I+E EK RQ++G ELI SENF +VM+A+G
Sbjct: 36 AMAESEKSRSSWIKQLNASLDEIDPEVADIIELEKARQWKGFELIPSENFTSLSVMQAVG 95
Query: 142 SHLTNKYSEGMPGAKYYTGNQYIDQIEFLCCKRALMAFDLDSNNWGVNVQPYSCTSANFA 201
S +TNKYSEG PGA+YY GN+YID E LC KRAL AF LD + WGVNVQ S + ANF
Sbjct: 96 SVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFQLDPSKWGVNVQSLSGSPANFQ 155
Query: 202 VFTGLLHPGDRIMGLDSPSGGHLSHGYYTLGGKKVAAASIFFQTLAYKVNPQTGYIDYDK 261
V+T LL P +RIM LD P GGHLSHGY T KK++A SIFF+T+ Y+++ TGYIDYD+
Sbjct: 156 VYTALLKPHERIMALDLPHGGHLSHGYQT-DTKKISAVSIFFETMPYRLDENTGYIDYDQ 214
Query: 262 LEEKAVDFRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLVAAKEGVSPF 321
LE+ AV FRPK+++ G S+Y R +DY R R++ +K AV++ DMAHISGLVAA SPF
Sbjct: 215 LEKSAVLFRPKLIVAGASAYARLYDYARIRKVCNKQKAVMLADMAHISGLVAAGVIPSPF 274
Query: 322 NYCDIVTSTTHKSLRGPRGGIIFYRKGPRPRKQGSVHNHGDDINYDFEEKINFALYPSLQ 381
Y D+VT+TTHKSLRGPRG +IF+RKG + ++ G ++ YD+E++IN A++P LQ
Sbjct: 275 EYADVVTTTTHKSLRGPRGAMIFFRKGLK-----EINKQGKEVMYDYEDRINQAVFPGLQ 329
Query: 382 GGPHNNHIAALAISFKQVATPEYKAYMQQVKKNAQALASALMRRKCRLVTDGTDNHLLLW 441
GGPHN+ I LA++ KQ TPEYKAY QV +N A L+ + LV+ GTDNHL+L
Sbjct: 330 GGPHNHTITGLAVALKQARTPEYKAYQDQVLRNCSKFAETLLAKGYDLVSGGTDNHLVLV 389
Query: 442 DLTVLGLIDRNYEKVCEACHITINKCAIYGSISS---GGVRIGTPAMTTRGCLENDFETI 498
+L G+ EKV E HI NK + G +S+ GG+R+GTPA+T+RG +E DF +
Sbjct: 390 NLKNKGIDGSRVEKVLELVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFIEEDFAKV 449
Query: 499 ADFLLRAAEITSIIQRE-HGKSCKEFLKGLQNNK----DIAELRNRVETFSSQFAMPGFD 553
A++ A +I I+ E G K+F+ +Q+N+ ++++LR VE ++ QF GF+
Sbjct: 450 AEYFDLAVKIALKIKAESQGTKLKDFVATMQSNEKLQSEMSKLREMVEEYAKQFPTIGFE 509
>AT4G32520.2 | Symbols: SHM3 | serine hydroxymethyltransferase 3 |
chr4:15689642-15692334 REVERSE LENGTH=529
Length = 529
Score = 478 bits (1231), Expect = e-135, Method: Compositional matrix adjust.
Identities = 249/503 (49%), Positives = 327/503 (65%), Gaps = 31/503 (6%)
Query: 59 RPMCLKRHIEEEEPQQQQSCFPAKRVAVDSAAEARRGWGNQPLCVADPEIHEIMEKEKWR 118
R LKR++ E + S V + S +G L DPE+ I+ KEK R
Sbjct: 47 RSSFLKRNLVSE---MRASSVSLPNVEISSKEIPFEDYG---LGEVDPEVRTIITKEKDR 100
Query: 119 QFRGIELIASENFVCRAVMEALGSHLTNKYSEGMPGAKYYTGNQYIDQIEFLCCKRALMA 178
QFR +ELIASENF RAVMEA+GS LTNKYSEG+PG +YY GN+YIDQ+E LC RAL A
Sbjct: 101 QFRSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDQLETLCQNRALAA 160
Query: 179 FDLDSNNWGVNVQPYSCTSANFAVFTGLLHPGDRIMGLDSPSGGHLSHGYYTLGGKKVAA 238
F LDS WGVNVQP S + ANFAV+T +L P DRIMGLD P GGHLSHG+ T ++V+
Sbjct: 161 FRLDSTKWGVNVQPLSGSPANFAVYTAILSPHDRIMGLDLPHGGHLSHGFMT-AKRRVSG 219
Query: 239 ASIFFQTLAYKVNPQTGYIDYDKLEEKAVDFRPKILICGGSSYPREWDYGRFRQIADKCG 298
SI+F+++ Y+++ TG +DYD LE+ A FRPK++I G S+Y R++DY R R+IAD G
Sbjct: 220 TSIYFESMPYRLDESTGIVDYDMLEKTATLFRPKLIIAGASAYSRDFDYPRMRKIADSVG 279
Query: 299 AVLMCDMAHISGLVAAKEGVSPFNYCDIVTSTTHKSLRGPRGGIIFYRKGPRPRKQGSVH 358
A LM DMAHISGLVAA PF YCDIVT+TTHKSLRGPRGG+IF+RK P
Sbjct: 280 AFLMMDMAHISGLVAASVVADPFEYCDIVTTTTHKSLRGPRGGMIFFRKDP--------- 330
Query: 359 NHGDDIN-YDFEEKINFALYPSLQGGPHNNHIAALAISFKQVATPEYKAYMQQVKKNAQA 417
IN D E +N A++P LQGGPHN+ I LA+ K +PE+KAY ++V N +A
Sbjct: 331 -----INGVDLESAVNNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKAYQKRVVSNCRA 385
Query: 418 LASALMRRKCRLVTDGTDNHLLLWDLTVLGLIDRNYEKVCEACHITINKCAIYGSISS-- 475
LA+ L+ +LV+ G+DNHL+L DL +G+ EK+ + IT+NK ++ G S+
Sbjct: 386 LANRLVELGFKLVSGGSDNHLVLVDLRPMGMDGARVEKILDMASITLNKNSVPGDKSALV 445
Query: 476 -GGVRIGTPAMTTRGCLENDFETIADFLLRAAEITSIIQREH-GKSCKEFLKGLQN---- 529
GG+RIG+PAMTTRG E DF +ADF+ EIT ++ G ++F K + +
Sbjct: 446 PGGIRIGSPAMTTRGLSEKDFVVVADFIKEGVEITMEAKKAAPGSKLQDFNKFVTSPEFP 505
Query: 530 -NKDIAELRNRVETFSSQFAMPG 551
+ + L+ RVETF+S+F +PG
Sbjct: 506 LKERVKSLKERVETFTSRFPIPG 528
>AT4G32520.1 | Symbols: SHM3, AtSHMT3 | serine
hydroxymethyltransferase 3 | chr4:15689642-15692334
REVERSE LENGTH=529
Length = 529
Score = 478 bits (1231), Expect = e-135, Method: Compositional matrix adjust.
Identities = 249/503 (49%), Positives = 327/503 (65%), Gaps = 31/503 (6%)
Query: 59 RPMCLKRHIEEEEPQQQQSCFPAKRVAVDSAAEARRGWGNQPLCVADPEIHEIMEKEKWR 118
R LKR++ E + S V + S +G L DPE+ I+ KEK R
Sbjct: 47 RSSFLKRNLVSE---MRASSVSLPNVEISSKEIPFEDYG---LGEVDPEVRTIITKEKDR 100
Query: 119 QFRGIELIASENFVCRAVMEALGSHLTNKYSEGMPGAKYYTGNQYIDQIEFLCCKRALMA 178
QFR +ELIASENF RAVMEA+GS LTNKYSEG+PG +YY GN+YIDQ+E LC RAL A
Sbjct: 101 QFRSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDQLETLCQNRALAA 160
Query: 179 FDLDSNNWGVNVQPYSCTSANFAVFTGLLHPGDRIMGLDSPSGGHLSHGYYTLGGKKVAA 238
F LDS WGVNVQP S + ANFAV+T +L P DRIMGLD P GGHLSHG+ T ++V+
Sbjct: 161 FRLDSTKWGVNVQPLSGSPANFAVYTAILSPHDRIMGLDLPHGGHLSHGFMT-AKRRVSG 219
Query: 239 ASIFFQTLAYKVNPQTGYIDYDKLEEKAVDFRPKILICGGSSYPREWDYGRFRQIADKCG 298
SI+F+++ Y+++ TG +DYD LE+ A FRPK++I G S+Y R++DY R R+IAD G
Sbjct: 220 TSIYFESMPYRLDESTGIVDYDMLEKTATLFRPKLIIAGASAYSRDFDYPRMRKIADSVG 279
Query: 299 AVLMCDMAHISGLVAAKEGVSPFNYCDIVTSTTHKSLRGPRGGIIFYRKGPRPRKQGSVH 358
A LM DMAHISGLVAA PF YCDIVT+TTHKSLRGPRGG+IF+RK P
Sbjct: 280 AFLMMDMAHISGLVAASVVADPFEYCDIVTTTTHKSLRGPRGGMIFFRKDP--------- 330
Query: 359 NHGDDIN-YDFEEKINFALYPSLQGGPHNNHIAALAISFKQVATPEYKAYMQQVKKNAQA 417
IN D E +N A++P LQGGPHN+ I LA+ K +PE+KAY ++V N +A
Sbjct: 331 -----INGVDLESAVNNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKAYQKRVVSNCRA 385
Query: 418 LASALMRRKCRLVTDGTDNHLLLWDLTVLGLIDRNYEKVCEACHITINKCAIYGSISS-- 475
LA+ L+ +LV+ G+DNHL+L DL +G+ EK+ + IT+NK ++ G S+
Sbjct: 386 LANRLVELGFKLVSGGSDNHLVLVDLRPMGMDGARVEKILDMASITLNKNSVPGDKSALV 445
Query: 476 -GGVRIGTPAMTTRGCLENDFETIADFLLRAAEITSIIQREH-GKSCKEFLKGLQN---- 529
GG+RIG+PAMTTRG E DF +ADF+ EIT ++ G ++F K + +
Sbjct: 446 PGGIRIGSPAMTTRGLSEKDFVVVADFIKEGVEITMEAKKAAPGSKLQDFNKFVTSPEFP 505
Query: 530 -NKDIAELRNRVETFSSQFAMPG 551
+ + L+ RVETF+S+F +PG
Sbjct: 506 LKERVKSLKERVETFTSRFPIPG 528
>AT5G26780.2 | Symbols: SHM2 | serine hydroxymethyltransferase 2 |
chr5:9418299-9421725 FORWARD LENGTH=533
Length = 533
Score = 470 bits (1209), Expect = e-132, Method: Compositional matrix adjust.
Identities = 238/496 (47%), Positives = 325/496 (65%), Gaps = 33/496 (6%)
Query: 85 AVDSAAEARRGWGNQ---PLCVADPEIHEIMEKEKWRQFRGIELIASENFVCRAVMEALG 141
A+ + ++R W Q L DPE+ +I+E EK RQ++G ELI SENF +VM+A+G
Sbjct: 36 AMAESEKSRSSWIKQLNASLDEIDPEVADIIELEKARQWKGFELIPSENFTSLSVMQAVG 95
Query: 142 SHLTNKYSEGMPGAKYYTGNQYIDQIEFLCCKRALMAFDLDSNNWGVNVQPYSCTSANFA 201
S +TNKYSEG PGA+YY GN+YID E LC KRAL AF LD + WGVNVQ S + ANF
Sbjct: 96 SVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFQLDPSKWGVNVQSLSGSPANFQ 155
Query: 202 VFTGLLHPGDRIMGLDSPSGGHLSHGYYTLGGKKVAAASIFFQTLAYKVNPQTGYIDYDK 261
V+T LL P +RIM LD P GGHLSHGY T KK++A SIFF+T+ Y+++ TGYIDYD+
Sbjct: 156 VYTALLKPHERIMALDLPHGGHLSHGYQT-DTKKISAVSIFFETMPYRLDENTGYIDYDQ 214
Query: 262 LEEKAVDFRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLVAAKEGVSPF 321
LE+ AV FRPK+++ G S+Y R +DY R R++ +K AV++ DMAHISGLVAA SPF
Sbjct: 215 LEKSAVLFRPKLIVAGASAYARLYDYARIRKVCNKQKAVMLADMAHISGLVAAGVIPSPF 274
Query: 322 NYCDIVTSTTHKSLRGPRGGIIFYRKGPRPRKQGSVHNHGDDINYDFEEKINFALYPSLQ 381
Y D+VT+TTHKSLRGPRG +IF+RKG + ++ G ++ YD+E++IN A++P LQ
Sbjct: 275 EYADVVTTTTHKSLRGPRGAMIFFRKGLK-----EINKQGKEVMYDYEDRINQAVFPGLQ 329
Query: 382 GGPHNNHIAALAISFKQVATPEYKAYMQQVKKNAQALAS----------------ALMRR 425
GGPHN+ I LA++ KQ TPEYKAY QV +N A L+ +
Sbjct: 330 GGPHNHTITGLAVALKQARTPEYKAYQDQVLRNCSKFAELDIRPTVIISYGLSMQTLLAK 389
Query: 426 KCRLVTDGTDNHLLLWDLTVLGLIDRNYEKVCEACHITINKCAIYGSISS---GGVRIGT 482
LV+ GTDNHL+L +L G+ EKV E HI NK + G +S+ GG+R+GT
Sbjct: 390 GYDLVSGGTDNHLVLVNLKNKGIDGSRVEKVLELVHIAANKNTVPGDVSAMVPGGIRMGT 449
Query: 483 PAMTTRGCLENDFETIADFLLRAAEITSIIQRE-HGKSCKEFLKGLQNNK----DIAELR 537
PA+T+RG +E DF +A++ A +I I+ E G K+F+ +Q+N+ ++++LR
Sbjct: 450 PALTSRGFIEEDFAKVAEYFDLAVKIALKIKAESQGTKLKDFVATMQSNEKLQSEMSKLR 509
Query: 538 NRVETFSSQFAMPGFD 553
VE ++ QF GF+
Sbjct: 510 EMVEEYAKQFPTIGFE 525
>AT5G26780.3 | Symbols: SHM2 | serine hydroxymethyltransferase 2 |
chr5:9418299-9421725 FORWARD LENGTH=533
Length = 533
Score = 470 bits (1209), Expect = e-132, Method: Compositional matrix adjust.
Identities = 238/496 (47%), Positives = 325/496 (65%), Gaps = 33/496 (6%)
Query: 85 AVDSAAEARRGWGNQ---PLCVADPEIHEIMEKEKWRQFRGIELIASENFVCRAVMEALG 141
A+ + ++R W Q L DPE+ +I+E EK RQ++G ELI SENF +VM+A+G
Sbjct: 36 AMAESEKSRSSWIKQLNASLDEIDPEVADIIELEKARQWKGFELIPSENFTSLSVMQAVG 95
Query: 142 SHLTNKYSEGMPGAKYYTGNQYIDQIEFLCCKRALMAFDLDSNNWGVNVQPYSCTSANFA 201
S +TNKYSEG PGA+YY GN+YID E LC KRAL AF LD + WGVNVQ S + ANF
Sbjct: 96 SVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFQLDPSKWGVNVQSLSGSPANFQ 155
Query: 202 VFTGLLHPGDRIMGLDSPSGGHLSHGYYTLGGKKVAAASIFFQTLAYKVNPQTGYIDYDK 261
V+T LL P +RIM LD P GGHLSHGY T KK++A SIFF+T+ Y+++ TGYIDYD+
Sbjct: 156 VYTALLKPHERIMALDLPHGGHLSHGYQT-DTKKISAVSIFFETMPYRLDENTGYIDYDQ 214
Query: 262 LEEKAVDFRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLVAAKEGVSPF 321
LE+ AV FRPK+++ G S+Y R +DY R R++ +K AV++ DMAHISGLVAA SPF
Sbjct: 215 LEKSAVLFRPKLIVAGASAYARLYDYARIRKVCNKQKAVMLADMAHISGLVAAGVIPSPF 274
Query: 322 NYCDIVTSTTHKSLRGPRGGIIFYRKGPRPRKQGSVHNHGDDINYDFEEKINFALYPSLQ 381
Y D+VT+TTHKSLRGPRG +IF+RKG + ++ G ++ YD+E++IN A++P LQ
Sbjct: 275 EYADVVTTTTHKSLRGPRGAMIFFRKGLK-----EINKQGKEVMYDYEDRINQAVFPGLQ 329
Query: 382 GGPHNNHIAALAISFKQVATPEYKAYMQQVKKNAQALAS----------------ALMRR 425
GGPHN+ I LA++ KQ TPEYKAY QV +N A L+ +
Sbjct: 330 GGPHNHTITGLAVALKQARTPEYKAYQDQVLRNCSKFAELDIRPTVIISYGLSMQTLLAK 389
Query: 426 KCRLVTDGTDNHLLLWDLTVLGLIDRNYEKVCEACHITINKCAIYGSISS---GGVRIGT 482
LV+ GTDNHL+L +L G+ EKV E HI NK + G +S+ GG+R+GT
Sbjct: 390 GYDLVSGGTDNHLVLVNLKNKGIDGSRVEKVLELVHIAANKNTVPGDVSAMVPGGIRMGT 449
Query: 483 PAMTTRGCLENDFETIADFLLRAAEITSIIQRE-HGKSCKEFLKGLQNNK----DIAELR 537
PA+T+RG +E DF +A++ A +I I+ E G K+F+ +Q+N+ ++++LR
Sbjct: 450 PALTSRGFIEEDFAKVAEYFDLAVKIALKIKAESQGTKLKDFVATMQSNEKLQSEMSKLR 509
Query: 538 NRVETFSSQFAMPGFD 553
VE ++ QF GF+
Sbjct: 510 EMVEEYAKQFPTIGFE 525