Miyakogusa Predicted Gene

Lj1g3v0715500.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0715500.3 tr|D7MBR7|D7MBR7_ARALL La domain-containing
protein OS=Arabidopsis lyrata subsp. lyrata
GN=ARALYDRAF,36.65,2e-18,OS03G0859300 PROTEIN,NULL; LUPUS LA
PROTEIN-RELATED,NULL; seg,NULL,CUFF.26200.3
         (298 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G35890.1 | Symbols:  | winged-helix DNA-binding transcription...    82   4e-16
AT5G66100.1 | Symbols:  | winged-helix DNA-binding transcription...    49   3e-06

>AT4G35890.1 | Symbols:  | winged-helix DNA-binding transcription
           factor family protein | chr4:16997433-17000410 FORWARD
           LENGTH=523
          Length = 523

 Score = 82.0 bits (201), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 73/205 (35%), Positives = 103/205 (50%), Gaps = 32/205 (15%)

Query: 56  NGGKRPAWNKPSNAASSS--VMGADSWPALSKSAHSPAKSLPEXXXXXXXXXXXXXN--- 110
           N GK+P W +PSN AS    VMGA SWPALS++  +P+                  +   
Sbjct: 109 NAGKKPVWKRPSNGASEVGPVMGASSWPALSETTKAPSNKSSSDSLKSLGDVPSSSSASS 168

Query: 111 ----LQGTGSAT-PSPQRQVRDNAGVNNTLP--TQQKPYKRXXXXXXXXXXXXPQHSGNQ 163
                QG  +A+ P+P++  R N    N  P  ++Q+ +K+             Q S  Q
Sbjct: 169 SVPVTQGIANASVPAPKQAGRANP---NPTPNHSRQRSFKQRNGASGSANGTVSQPSA-Q 224

Query: 164 GSVAATGSHSHNSSQKDHHQQRTGFVSNDHP----PQQRNSYRNRNGGGPHQRGDGAHHH 219
           GS   T   SHN S +  +Q + GF S +H     P QR+SYRN+NG          HH 
Sbjct: 225 GSF--TELPSHNPSPRGQNQ-KNGFASQNHGGTENPSQRDSYRNQNGN---------HHQ 272

Query: 220 NYGGRRDQDRGNQDWNNQRNFNGRD 244
           ++GGRR+Q+ GNQ+W  QR+FNGR+
Sbjct: 273 SHGGRRNQEHGNQNWTFQRSFNGRE 297


>AT5G66100.1 | Symbols:  | winged-helix DNA-binding transcription
           factor family protein | chr5:26427639-26429772 FORWARD
           LENGTH=453
          Length = 453

 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 89/208 (42%), Gaps = 34/208 (16%)

Query: 53  NNANGGKRPAWNKPSNAASSSV---MGA-DSWPA---------LSKSAHSPAKSLPEXXX 99
           +NA+    P WN PS+ +SS V   MGA +SWPA         +   +   +K  P+   
Sbjct: 70  DNADKKPPPVWNMPSSNSSSDVGPVMGAAESWPALSLSARSSSIKSPSLDASKPFPDGSS 129

Query: 100 XXXXXXXXXXNLQGTGSATPSPQRQVRDNAGVNNTLPTQQKPYKRXXXXXXXXXXXXPQH 159
                     N     +A  S      +N+ VNN+   Q+KP++R               
Sbjct: 130 SSIPPPQATSNTSTNANAGSSVSATSSENSAVNNS---QRKPFRRNNNTSSS------ST 180

Query: 160 SGNQGSVAATGSHSHNSSQKDHHQQRTGFVSNDHPPQQRNSYRNRNGGGPHQRGDGAHHH 219
           S N  + A   +   N SQ+      +G          RNS RNRN    + RG+G HH 
Sbjct: 181 SSNVSNAAPLNTRDQNHSQRGGGSFGSG--------NFRNSQRNRNSSS-YPRGEGLHH- 230

Query: 220 NYGGRRDQDRGNQDWNNQRNFNGRDNYM 247
             G RR+ + GNQ   + RN++GRD ++
Sbjct: 231 --GNRRNYEHGNQSGFSHRNYSGRDMHL 256