Miyakogusa Predicted Gene
- Lj1g3v0715500.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v0715500.2 Non Chatacterized Hit- tr|A5C5P2|A5C5P2_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,38.5,9e-19,SUBFAMILY NOT NAMED,NULL; LUPUS LA
PROTEIN-RELATED,NULL; La,RNA-binding protein Lupus La; no
descrip,CUFF.26200.2
(244 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G35890.1 | Symbols: | winged-helix DNA-binding transcription... 119 2e-27
AT5G66100.1 | Symbols: | winged-helix DNA-binding transcription... 114 7e-26
AT5G21160.2 | Symbols: | LA RNA-binding protein | chr5:7198817-... 92 3e-19
AT5G21160.3 | Symbols: | LA RNA-binding protein | chr5:7198817-... 92 3e-19
AT5G21160.1 | Symbols: | LA RNA-binding protein | chr5:7199191-... 92 3e-19
AT5G46250.1 | Symbols: | RNA-binding protein | chr5:18755388-18... 61 6e-10
AT5G46250.2 | Symbols: | RNA-binding protein | chr5:18755388-18... 61 8e-10
AT5G46250.3 | Symbols: | RNA-binding protein | chr5:18755388-18... 61 8e-10
AT2G43970.2 | Symbols: | RNA-binding protein | chr2:18205535-18... 54 1e-07
AT2G43970.1 | Symbols: | RNA-binding protein | chr2:18205535-18... 54 1e-07
AT3G19090.1 | Symbols: | RNA-binding protein | chr3:6601466-660... 52 3e-07
>AT4G35890.1 | Symbols: | winged-helix DNA-binding transcription
factor family protein | chr4:16997433-17000410 FORWARD
LENGTH=523
Length = 523
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/141 (41%), Positives = 97/141 (68%), Gaps = 6/141 (4%)
Query: 68 FVPPIPPNAMFF-QPPDPQLHTMIVNQVDYYFSNENLVKDIYLRQNMDDQGFVPINLIAG 126
++ PIP FF DP LH + Q+ YYFS+ENL+ DIYLR M+++GFVP+ ++AG
Sbjct: 350 YMTPIPHGPQFFYHYQDPPLHMKLHKQIQYYFSDENLITDIYLRGFMNNEGFVPLRVVAG 409
Query: 127 FKKVKLLTDNIQIVLDAVRSSSAVEVQGDKIRRRNDWRRWLMPPVQISNVTAPQTVGQ-- 184
FKKV LTDNIQ +++A+++S VEVQGD IR+R++W+ W++ + + PQ+V +
Sbjct: 410 FKKVAELTDNIQQIVEALQNSPHVEVQGDFIRKRDNWQNWVL--RRNPTGSGPQSVDRAD 467
Query: 185 -LTEQVQSISLETTKSDAAGG 204
+ +++ ++S++ + +D GG
Sbjct: 468 AVAKRLGNLSVDQSSADPIGG 488
>AT5G66100.1 | Symbols: | winged-helix DNA-binding transcription
factor family protein | chr5:26427639-26429772 FORWARD
LENGTH=453
Length = 453
Score = 114 bits (284), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 85/131 (64%), Gaps = 2/131 (1%)
Query: 66 VSFVPPIPPNAMFFQPPDPQLHTMIVNQVDYYFSNENLVKDIYLRQNMDDQGFVPINLIA 125
+ V P P M+F+ D L+ I+ QV+YYFS +NL +D +LR M+D+G+VP+ +IA
Sbjct: 315 MGLVGPFPLQPMYFRNFDAILYNKILTQVEYYFSADNLSRDEHLRDQMNDEGWVPVRVIA 374
Query: 126 GFKKVKLLTDNIQIVLDAVRSSSAVEVQGDKIRRRNDWRRWLMP--PVQISNVTAPQTVG 183
F+++ LT+NIQ +L+A+RSS VE+QG+ +RRR DW ++L+P P +
Sbjct: 375 AFRRLAELTNNIQTILEALRSSEVVEIQGETLRRRGDWDKYLLPREPSRSGPAAGASNNA 434
Query: 184 QLTEQVQSISL 194
L Q++S++L
Sbjct: 435 SLVSQIESMTL 445
>AT5G21160.2 | Symbols: | LA RNA-binding protein |
chr5:7198817-7203879 REVERSE LENGTH=832
Length = 832
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 84/136 (61%), Gaps = 9/136 (6%)
Query: 86 LHTMIVNQVDYYFSNENLVKDIYLRQNMDDQGFVPINLIAGFKKVKLLTDNIQIVLDAVR 145
L ++ QV+YYFS+ENL D YL MD++G+VP +IAGFK+VK +T ++ ++ A+
Sbjct: 278 LRDRVLKQVEYYFSDENLENDHYLISLMDEEGWVPTKIIAGFKRVKAMTMDVDFIVYALG 337
Query: 146 SSSAVEVQGDKIRRRNDWRRWLMPPVQISNVTAPQTVGQL-TEQVQSISLETTKSDAAGG 204
S++VEVQGD+IR+R+ W W+ P + +A +T+G + +SI T D G
Sbjct: 338 FSNSVEVQGDQIRKRDKWSDWI--PASKKSTSA-ETIGDGDKDSPKSI----TSGDNFGN 390
Query: 205 QDVSHSRP-LGDFNSQ 219
S+P + DF+S+
Sbjct: 391 PSKGSSKPTVSDFSSE 406
>AT5G21160.3 | Symbols: | LA RNA-binding protein |
chr5:7198817-7203879 REVERSE LENGTH=833
Length = 833
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 84/136 (61%), Gaps = 9/136 (6%)
Query: 86 LHTMIVNQVDYYFSNENLVKDIYLRQNMDDQGFVPINLIAGFKKVKLLTDNIQIVLDAVR 145
L ++ QV+YYFS+ENL D YL MD++G+VP +IAGFK+VK +T ++ ++ A+
Sbjct: 278 LRDRVLKQVEYYFSDENLENDHYLISLMDEEGWVPTKIIAGFKRVKAMTMDVDFIVYALG 337
Query: 146 SSSAVEVQGDKIRRRNDWRRWLMPPVQISNVTAPQTVGQL-TEQVQSISLETTKSDAAGG 204
S++VEVQGD+IR+R+ W W+ P + +A +T+G + +SI T D G
Sbjct: 338 FSNSVEVQGDQIRKRDKWSDWI--PASKKSTSA-ETIGDGDKDSPKSI----TSGDNFGN 390
Query: 205 QDVSHSRP-LGDFNSQ 219
S+P + DF+S+
Sbjct: 391 PSKGSSKPTVSDFSSE 406
>AT5G21160.1 | Symbols: | LA RNA-binding protein |
chr5:7199191-7203879 REVERSE LENGTH=826
Length = 826
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 84/136 (61%), Gaps = 9/136 (6%)
Query: 86 LHTMIVNQVDYYFSNENLVKDIYLRQNMDDQGFVPINLIAGFKKVKLLTDNIQIVLDAVR 145
L ++ QV+YYFS+ENL D YL MD++G+VP +IAGFK+VK +T ++ ++ A+
Sbjct: 278 LRDRVLKQVEYYFSDENLENDHYLISLMDEEGWVPTKIIAGFKRVKAMTMDVDFIVYALG 337
Query: 146 SSSAVEVQGDKIRRRNDWRRWLMPPVQISNVTAPQTVGQL-TEQVQSISLETTKSDAAGG 204
S++VEVQGD+IR+R+ W W+ P + +A +T+G + +SI T D G
Sbjct: 338 FSNSVEVQGDQIRKRDKWSDWI--PASKKSTSA-ETIGDGDKDSPKSI----TSGDNFGN 390
Query: 205 QDVSHSRP-LGDFNSQ 219
S+P + DF+S+
Sbjct: 391 PSKGSSKPTVSDFSSE 406
>AT5G46250.1 | Symbols: | RNA-binding protein |
chr5:18755388-18758056 FORWARD LENGTH=422
Length = 422
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 52/79 (65%), Gaps = 4/79 (5%)
Query: 85 QLHTMIVNQVDYYFSNENLVKDIYLRQNM--DDQGFVPINLIAGFKKVKLLTDNIQIVLD 142
+L+ I+ QV+YYFS+ENL D +L M + +GFVPI+ IA F K+K LT + +++
Sbjct: 102 ELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIVS 161
Query: 143 AVRSSSAVEVQGD--KIRR 159
A++ SS + V D K++R
Sbjct: 162 ALKESSFLVVSADEKKVKR 180
>AT5G46250.2 | Symbols: | RNA-binding protein |
chr5:18755388-18757723 FORWARD LENGTH=340
Length = 340
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 53/82 (64%), Gaps = 4/82 (4%)
Query: 82 PDPQLHTMIVNQVDYYFSNENLVKDIYLRQNM--DDQGFVPINLIAGFKKVKLLTDNIQI 139
P +L+ I+ QV+YYFS+ENL D +L M + +GFVPI+ IA F K+K LT + +
Sbjct: 99 PIDELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHAL 158
Query: 140 VLDAVRSSSAVEVQGD--KIRR 159
++ A++ SS + V D K++R
Sbjct: 159 IVSALKESSFLVVSADEKKVKR 180
>AT5G46250.3 | Symbols: | RNA-binding protein |
chr5:18755388-18757723 FORWARD LENGTH=340
Length = 340
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 53/82 (64%), Gaps = 4/82 (4%)
Query: 82 PDPQLHTMIVNQVDYYFSNENLVKDIYLRQNM--DDQGFVPINLIAGFKKVKLLTDNIQI 139
P +L+ I+ QV+YYFS+ENL D +L M + +GFVPI+ IA F K+K LT + +
Sbjct: 99 PIDELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHAL 158
Query: 140 VLDAVRSSSAVEVQGD--KIRR 159
++ A++ SS + V D K++R
Sbjct: 159 IVSALKESSFLVVSADEKKVKR 180
>AT2G43970.2 | Symbols: | RNA-binding protein |
chr2:18205535-18208031 REVERSE LENGTH=529
Length = 529
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 47/75 (62%), Gaps = 6/75 (8%)
Query: 90 IVNQVDYYFSNENLVKDIYLRQ--NMDDQGFVPINLIAGFKKVKLLTDNIQIVLDAVRSS 147
IVNQV+YYFS+ NL +L + D +G+VPI+++A FKK+K + +N L AV +
Sbjct: 197 IVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKIKAVINN-NSQLAAVLQN 255
Query: 148 SA---VEVQGDKIRR 159
SA V G K+RR
Sbjct: 256 SAKLFVSEDGKKVRR 270
>AT2G43970.1 | Symbols: | RNA-binding protein |
chr2:18205535-18208031 REVERSE LENGTH=545
Length = 545
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 47/75 (62%), Gaps = 6/75 (8%)
Query: 90 IVNQVDYYFSNENLVKDIYLRQ--NMDDQGFVPINLIAGFKKVKLLTDNIQIVLDAVRSS 147
IVNQV+YYFS+ NL +L + D +G+VPI+++A FKK+K + +N L AV +
Sbjct: 197 IVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKIKAVINN-NSQLAAVLQN 255
Query: 148 SA---VEVQGDKIRR 159
SA V G K+RR
Sbjct: 256 SAKLFVSEDGKKVRR 270
>AT3G19090.1 | Symbols: | RNA-binding protein |
chr3:6601466-6603709 FORWARD LENGTH=455
Length = 455
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 4/78 (5%)
Query: 86 LHTMIVNQVDYYFSNENLVKDIYLRQNM--DDQGFVPINLIAGFKKVKLLTDNIQIVLDA 143
L IV QV+Y F++ +L+ + + +++ D +G+VP++ IA KK+K LT N +V A
Sbjct: 144 LRLKIVKQVEYQFTDMSLLANESISKHISKDPEGYVPVSYIASTKKIKALTSNHHLVSLA 203
Query: 144 VRSSSAVEVQ--GDKIRR 159
+RSSS + V G K++R
Sbjct: 204 LRSSSKLVVSEDGKKVKR 221