Miyakogusa Predicted Gene

Lj1g3v0682800.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0682800.1 Non Chatacterized Hit- tr|I1JWK6|I1JWK6_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,61.54,0.00000000000001, ,CUFF.26162.1
         (127 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATMG00310.1 | Symbols: ORF154 | RNA-directed DNA polymerase (rev...    55   1e-08

>ATMG00310.1 | Symbols: ORF154 | RNA-directed DNA polymerase
          (reverse transcriptase)-related family protein |
          chrM:90883-91347 REVERSE LENGTH=154
          Length = 154

 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 38/54 (70%), Gaps = 1/54 (1%)

Query: 1  MRKFLWGGAEGENKVSWVSWEWMCRPKE-LGGLGIKDLGKFNVALLGKWNWRLL 53
          M +F W   E + K+SWV+W+ +C+ KE  GGLG +DLG FN ALL K ++R++
Sbjct: 25 MTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRDLGWFNQALLAKQSFRII 78