Miyakogusa Predicted Gene

Lj1g3v0672680.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0672680.1 Non Chatacterized Hit- tr|I3T354|I3T354_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,96.88,0,L30e-like,NULL; NUCLEARHMG,H/ACA ribonucleoprotein
complex, subunit Nhp2, eukaryote; L7ARS6FAMILY,Ri,CUFF.26161.1
         (128 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G22380.1 | Symbols:  | Ribosomal protein L7Ae/L30e/S12e/Gadd4...   220   1e-58
AT5G20160.1 | Symbols:  | Ribosomal protein L7Ae/L30e/S12e/Gadd4...   219   5e-58
AT4G12600.1 | Symbols:  | Ribosomal protein L7Ae/L30e/S12e/Gadd4...   213   2e-56
AT5G20160.2 | Symbols:  | Ribosomal protein L7Ae/L30e/S12e/Gadd4...   202   4e-53
AT4G12600.2 | Symbols:  | Ribosomal protein L7Ae/L30e/S12e/Gadd4...   152   8e-38
AT5G20160.3 | Symbols:  | Ribosomal protein L7Ae/L30e/S12e/Gadd4...   102   8e-23
AT5G08180.2 | Symbols:  | Ribosomal protein L7Ae/L30e/S12e/Gadd4...    67   4e-12
AT5G08180.1 | Symbols:  | Ribosomal protein L7Ae/L30e/S12e/Gadd4...    67   4e-12

>AT4G22380.1 | Symbols:  | Ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein | chr4:11812041-11812922 REVERSE
           LENGTH=128
          Length = 128

 Score =  220 bits (561), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 108/128 (84%), Positives = 112/128 (87%)

Query: 1   MTGETVNPKAYPLADAQLTITIMDLVQQASNYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MTGE VNPKAYPLAD+QL+ITIMDLVQQA+NYKQLKKGANEATKTLNRGISEFVVMAAD 
Sbjct: 1   MTGEVVNPKAYPLADSQLSITIMDLVQQATNYKQLKKGANEATKTLNRGISEFVVMAADA 60

Query: 61  XXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
                       AEDKNVPYVFVPSKQALGRACGVTRPVIACSVT+NE SQLKSQIQ LK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKSQIQHLK 120

Query: 121 DAIEKLLI 128
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128


>AT5G20160.1 | Symbols:  | Ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein | chr5:6804075-6805102 REVERSE LENGTH=128
          Length = 128

 Score =  219 bits (557), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 107/128 (83%), Positives = 112/128 (87%)

Query: 1   MTGETVNPKAYPLADAQLTITIMDLVQQASNYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MTGE VNPKAYPLAD+QL+ITI+DLVQQA+NYKQLKKGANEATKTLNRGISEFVVMAAD 
Sbjct: 1   MTGEVVNPKAYPLADSQLSITILDLVQQATNYKQLKKGANEATKTLNRGISEFVVMAADA 60

Query: 61  XXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
                       AEDKNVPYVFVPSKQALGRACGVTRPVIACSVT+NE SQLKSQIQ LK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKSQIQHLK 120

Query: 121 DAIEKLLI 128
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128


>AT4G12600.1 | Symbols:  | Ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein | chr4:7453296-7454208 FORWARD LENGTH=128
          Length = 128

 Score =  213 bits (542), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 105/128 (82%), Positives = 111/128 (86%)

Query: 1   MTGETVNPKAYPLADAQLTITIMDLVQQASNYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MT E VNPKAYPLAD+QL+ITI+DLVQQA+NYKQLKKGANEATKTLNRGISEF+VMAADT
Sbjct: 1   MTVEGVNPKAYPLADSQLSITILDLVQQATNYKQLKKGANEATKTLNRGISEFIVMAADT 60

Query: 61  XXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
                       AEDKNVPYVFVPSKQALGRAC VTRPVIACSVT+NE SQLKSQIQ LK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACDVTRPVIACSVTSNEASQLKSQIQHLK 120

Query: 121 DAIEKLLI 128
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128


>AT5G20160.2 | Symbols:  | Ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein | chr5:6804075-6805102 REVERSE LENGTH=160
          Length = 160

 Score =  202 bits (515), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 107/160 (66%), Positives = 112/160 (70%), Gaps = 32/160 (20%)

Query: 1   MTGETVNPKAYPLADAQLTITIMDLVQQASNYKQLKKGANE------------------- 41
           MTGE VNPKAYPLAD+QL+ITI+DLVQQA+NYKQLKKGANE                   
Sbjct: 1   MTGEVVNPKAYPLADSQLSITILDLVQQATNYKQLKKGANEGIRLLLMCVCLSYLLSLMF 60

Query: 42  -------------ATKTLNRGISEFVVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQA 88
                        ATKTLNRGISEFVVMAAD             AEDKNVPYVFVPSKQA
Sbjct: 61  VKLFLIYLNLFISATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQA 120

Query: 89  LGRACGVTRPVIACSVTTNEGSQLKSQIQQLKDAIEKLLI 128
           LGRACGVTRPVIACSVT+NE SQLKSQIQ LKDAIEKLLI
Sbjct: 121 LGRACGVTRPVIACSVTSNEASQLKSQIQHLKDAIEKLLI 160


>AT4G12600.2 | Symbols:  | Ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein | chr4:7453296-7454208 FORWARD LENGTH=183
          Length = 183

 Score =  152 bits (383), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 91/183 (49%), Positives = 100/183 (54%), Gaps = 55/183 (30%)

Query: 1   MTGETVNPKAYPLADAQLTITIMDLVQQASNYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MT E VNPKAYPLAD+QL+ITI+DLVQQA+NYKQLKKGANEATKTLNRGISEF+VMAADT
Sbjct: 1   MTVEGVNPKAYPLADSQLSITILDLVQQATNYKQLKKGANEATKTLNRGISEFIVMAADT 60

Query: 61  XXXXXXXXXXXXAEDKNVPYVFVPS---------KQALGRACGVT--------------- 96
                       AEDK   ++ + S           AL    G T               
Sbjct: 61  EPLEILLHLPLLAEDKVFEFLLIVSLSYESQLVVSLALASFTGFTWVSSSYDKKIRLYWL 120

Query: 97  -------------------------------RPVIACSVTTNEGSQLKSQIQQLKDAIEK 125
                                          RPVIACSVT+NE SQLKSQIQ LKDAIEK
Sbjct: 121 LDSSFEIVIVDNVPYVFVPSKQALGRACDVTRPVIACSVTSNEASQLKSQIQHLKDAIEK 180

Query: 126 LLI 128
           LLI
Sbjct: 181 LLI 183


>AT5G20160.3 | Symbols:  | Ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein | chr5:6804653-6805102 REVERSE LENGTH=109
          Length = 109

 Score =  102 bits (253), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 58/108 (53%), Positives = 62/108 (57%), Gaps = 32/108 (29%)

Query: 1   MTGETVNPKAYPLADAQLTITIMDLVQQASNYKQLKKGANE------------------- 41
           MTGE VNPKAYPLAD+QL+ITI+DLVQQA+NYKQLKKGANE                   
Sbjct: 1   MTGEVVNPKAYPLADSQLSITILDLVQQATNYKQLKKGANEGIRLLLMCVCLSYLLSLMF 60

Query: 42  -------------ATKTLNRGISEFVVMAADTXXXXXXXXXXXXAEDK 76
                        ATKTLNRGISEFVVMAAD             AEDK
Sbjct: 61  VKLFLIYLNLFISATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDK 108


>AT5G08180.2 | Symbols:  | Ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein | chr5:2631843-2633374 REVERSE LENGTH=156
          Length = 156

 Score = 66.6 bits (161), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 63/131 (48%), Gaps = 9/131 (6%)

Query: 5   TVNPKAYPLADAQLTITIMDLVQQASNYKQLKKGANEATKTLNRGISEFVVMAADTXXXX 64
           T+ P A PLA  +L      L+Q+A+  K LK+G  E  K++ RG     V+A +     
Sbjct: 21  TLAPIAKPLAGKKLQKRTFKLIQKAAGKKCLKRGVKEVVKSIRRGQKGLCVIAGNISPID 80

Query: 65  XXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSV---------TTNEGSQLKSQ 115
                    E+  VPYV+VPSK+ L +A    RP     V         T  E ++LK+ 
Sbjct: 81  VITHLPILCEEAGVPYVYVPSKEDLAQAGATKRPTCCVLVMLKPAKGDLTAEELAKLKTD 140

Query: 116 IQQLKDAIEKL 126
            +Q+ D I++L
Sbjct: 141 YEQVSDDIKEL 151


>AT5G08180.1 | Symbols:  | Ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein | chr5:2631843-2633374 REVERSE LENGTH=156
          Length = 156

 Score = 66.6 bits (161), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 63/131 (48%), Gaps = 9/131 (6%)

Query: 5   TVNPKAYPLADAQLTITIMDLVQQASNYKQLKKGANEATKTLNRGISEFVVMAADTXXXX 64
           T+ P A PLA  +L      L+Q+A+  K LK+G  E  K++ RG     V+A +     
Sbjct: 21  TLAPIAKPLAGKKLQKRTFKLIQKAAGKKCLKRGVKEVVKSIRRGQKGLCVIAGNISPID 80

Query: 65  XXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSV---------TTNEGSQLKSQ 115
                    E+  VPYV+VPSK+ L +A    RP     V         T  E ++LK+ 
Sbjct: 81  VITHLPILCEEAGVPYVYVPSKEDLAQAGATKRPTCCVLVMLKPAKGDLTAEELAKLKTD 140

Query: 116 IQQLKDAIEKL 126
            +Q+ D I++L
Sbjct: 141 YEQVSDDIKEL 151