Miyakogusa Predicted Gene

Lj1g3v0672350.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0672350.2 Non Chatacterized Hit- tr|I1LMG8|I1LMG8_SOYBN
Uncharacterized protein OS=Glycine max PE=3
SV=1,78.63,0,CULLIN_2,Cullin homology; seg,NULL; Cullin,Cullin,
N-terminal; APC2,Anaphase-promoting complex subun,CUFF.26174.2
         (255 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G04660.1 | Symbols: APC2 | anaphase-promoting complex/cycloso...   293   1e-79

>AT2G04660.1 | Symbols: APC2 | anaphase-promoting complex/cyclosome
           2 | chr2:1624933-1629039 FORWARD LENGTH=865
          Length = 865

 Score =  293 bits (749), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 140/226 (61%), Positives = 171/226 (75%), Gaps = 5/226 (2%)

Query: 30  LQVEPLNLPEPVDKLLSDYAKRFNEIKTPRKLQWKKSLGTVKLELQLKDRVLQFTVAPVH 89
           +Q EPL LP PVDKLLSDYA R++EIKTPRKL WKK+LGTVKLELQ +DR +QFTV+P H
Sbjct: 645 IQDEPLELPGPVDKLLSDYANRYHEIKTPRKLLWKKNLGTVKLELQFEDRAMQFTVSPTH 704

Query: 90  ASIIMNFQDQTSWTSKNLAAAVGIPVDALNRRMSFWISKGVVAESSGGDSSDHVYTIMES 149
           A+IIM FQ++ SWT K+LA  +GIP+DALNRR++FWISKGV+ ES+G +S+  V T++ES
Sbjct: 705 AAIIMQFQEKKSWTYKDLAEVIGIPIDALNRRVNFWISKGVLRESTGANSNSSVLTLVES 764

Query: 150 MVETKKRDSSGITQXXXXXXXXXXXRAVASIENQLRKEMSIYEKFIMGMLTNFGSMALDR 209
           + ++ K                    ++AS+E+QLRKEM+IYEKFIMGMLTNFGSMAL+R
Sbjct: 765 ITDSGKN-----EGEELLTGEEEGETSIASVEDQLRKEMTIYEKFIMGMLTNFGSMALER 819

Query: 210 IHNRLKMFCIADPPYDKXXXXXXXXXXGLVSEEKLELRDGMYTPKK 255
           IHN LKMFC+ADP YDK          GLVSEEKLE RDGMY  KK
Sbjct: 820 IHNTLKMFCVADPSYDKSLQQLQSFLSGLVSEEKLEFRDGMYLLKK 865