Miyakogusa Predicted Gene

Lj1g3v0639770.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0639770.1 Non Chatacterized Hit- tr|A5BXX4|A5BXX4_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,44.95,1.99965e-42,DUF659,Domain of unknown function DUF659;
SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
Ribonucle,CUFF.26088.1
         (212 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G17450.1 | Symbols:  | hAT dimerisation domain-containing pro...   106   1e-23
AT3G22220.2 | Symbols:  | hAT transposon superfamily | chr3:7839...   106   1e-23
AT3G22220.1 | Symbols:  | hAT transposon superfamily | chr3:7839...   106   1e-23
AT4G15020.2 | Symbols:  | hAT transposon superfamily | chr4:8575...    97   7e-21
AT4G15020.1 | Symbols:  | hAT transposon superfamily | chr4:8575...    97   7e-21
AT1G43260.1 | Symbols:  | hAT transposon superfamily protein | c...    83   2e-16
AT1G79740.1 | Symbols:  | hAT transposon superfamily | chr1:3000...    75   3e-14
AT1G36095.1 | Symbols:  | DNA binding | chr1:13491370-13492725 R...    70   1e-12
AT5G31412.1 | Symbols:  | hAT transposon superfamily protein | c...    61   4e-10
AT3G13020.1 | Symbols:  | hAT transposon superfamily protein | c...    55   2e-08
AT5G33406.1 | Symbols:  | hAT dimerisation domain-containing pro...    49   3e-06

>AT3G17450.1 | Symbols:  | hAT dimerisation domain-containing
           protein | chr3:5972793-5975684 REVERSE LENGTH=877
          Length = 877

 Score =  106 bits (264), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/216 (33%), Positives = 103/216 (47%), Gaps = 16/216 (7%)

Query: 1   MCDGWTYGLNHTHIMNFLVYSSKGKVFLNSIDVSGAATRDTDFYFQWLDKIXXXXXXXXX 60
           M D WT       +++FLV   +G  F +SID +     D    F+ LDK+         
Sbjct: 378 MADTWT-NTEGKKMISFLVSCPRGVYFHSSIDATDI-VEDALSLFKCLDKLVDDIGEENV 435

Query: 61  XXXXTDNEATLKATIQKLVEKRPHLYWSACAAHCLDLCLEDIGKKKNVQAVLNDANTVTN 120
               T N A  ++  + L EKR +LYW+ CA HC +L LED  K + V   L  A  +T 
Sbjct: 436 VQVITQNTAIFRSAGKLLEEKRKNLYWTPCAIHCTELVLEDFSKLEFVSECLEKAQRITR 495

Query: 121 FIYNHLWTVSLMK-KFTNDRELFRPGITRFATQFLPLQEIVKQKDGLTKMFD------SQ 173
           FIYN  W ++LMK +FT   +L RP + R A+ F  LQ ++  K  L  +F       SQ
Sbjct: 496 FIYNQTWLLNLMKNEFTQGLDLLRPAVMRHASGFTTLQSLMDHKASLRGLFQSDGWILSQ 555

Query: 174 EFKRSQFGRDKYGFAFEAQEIVNDKELWAKSADILK 209
              +S+ GR       E +++V     W K   +LK
Sbjct: 556 TAAKSEEGR-------EVEKMVLSAVFWKKVQYVLK 584


>AT3G22220.2 | Symbols:  | hAT transposon superfamily |
           chr3:7839808-7842358 REVERSE LENGTH=761
          Length = 761

 Score =  106 bits (264), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 3/188 (1%)

Query: 14  IMNFLVYSSKGKVFLNSIDVSGAATRDTDFYFQWLDKIXXXXXXXXXXXXXTDNEATLKA 73
           I+ FLVY  +  VFL S+D S     +   Y + L ++             T  E    A
Sbjct: 278 ILKFLVYCPEKVVFLKSVDASEILDSEDKLY-ELLKEVVEEIGDTNVVQVITKCEDHYAA 336

Query: 74  TIQKLVEKRPHLYWSACAAHCLDLCLEDIGKKKNVQAVLNDANTVTNFIYNHLWTVSLMK 133
             +KL++  P LYW  CAAHC+D  LE+ GK   ++ ++  A TVT  IYNH   ++LM+
Sbjct: 337 AGKKLMDVYPSLYWVPCAAHCIDKMLEEFGKMDWIREIIEQARTVTRIIYNHSGVLNLMR 396

Query: 134 KFTNDRELFRPGITRFATQFLPLQEIVKQKDGLTKMFDSQEFKRSQFGRDKYGFAFEAQE 193
           KFT   ++ +P  T  AT F  +  I   K  L  M  S E+    + ++  G A    E
Sbjct: 397 KFTFGNDIVQPVCTSSATNFTTMGRIADLKPYLQAMVTSSEWNDCSYSKEAGGLAM--TE 454

Query: 194 IVNDKELW 201
            +ND++ W
Sbjct: 455 TINDEDFW 462


>AT3G22220.1 | Symbols:  | hAT transposon superfamily |
           chr3:7839808-7842358 REVERSE LENGTH=761
          Length = 761

 Score =  106 bits (264), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 3/188 (1%)

Query: 14  IMNFLVYSSKGKVFLNSIDVSGAATRDTDFYFQWLDKIXXXXXXXXXXXXXTDNEATLKA 73
           I+ FLVY  +  VFL S+D S     +   Y + L ++             T  E    A
Sbjct: 278 ILKFLVYCPEKVVFLKSVDASEILDSEDKLY-ELLKEVVEEIGDTNVVQVITKCEDHYAA 336

Query: 74  TIQKLVEKRPHLYWSACAAHCLDLCLEDIGKKKNVQAVLNDANTVTNFIYNHLWTVSLMK 133
             +KL++  P LYW  CAAHC+D  LE+ GK   ++ ++  A TVT  IYNH   ++LM+
Sbjct: 337 AGKKLMDVYPSLYWVPCAAHCIDKMLEEFGKMDWIREIIEQARTVTRIIYNHSGVLNLMR 396

Query: 134 KFTNDRELFRPGITRFATQFLPLQEIVKQKDGLTKMFDSQEFKRSQFGRDKYGFAFEAQE 193
           KFT   ++ +P  T  AT F  +  I   K  L  M  S E+    + ++  G A    E
Sbjct: 397 KFTFGNDIVQPVCTSSATNFTTMGRIADLKPYLQAMVTSSEWNDCSYSKEAGGLAM--TE 454

Query: 194 IVNDKELW 201
            +ND++ W
Sbjct: 455 TINDEDFW 462


>AT4G15020.2 | Symbols:  | hAT transposon superfamily |
           chr4:8575806-8578372 FORWARD LENGTH=768
          Length = 768

 Score = 97.1 bits (240), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 87/192 (45%), Gaps = 4/192 (2%)

Query: 14  IMNFLVYSSKGKVFLNSIDVSGAATRDTDFYFQWLDKIXXXXXXXXXXXXXTDNEATLKA 73
           ++NFLVY  +  VFL S+D S   +   D  F+ L ++             T  +     
Sbjct: 282 VLNFLVYCPEKVVFLKSVDASEVLS-SADKLFELLSELVEEVGSTNVVQVITKCDDYYVD 340

Query: 74  TIQKLVEKRPHLYWSACAAHCLDLCLEDIGKKKNVQAVLNDANTVTNFIYNHLWTVSLMK 133
             ++L+   P LYW  CAAHC+D  LE+ GK   +   +  A  +T F+YNH   ++LM 
Sbjct: 341 AGKRLMLVYPSLYWVPCAAHCIDQMLEEFGKLGWISETIEQAQAITRFVYNHSGVLNLMW 400

Query: 134 KFTNDRELFRPGITRFATQFLPLQEIVKQKDGLTKMFDSQEFKRSQFGRDKYGFAFEAQE 193
           KFT+  ++  P  +  AT F  L  I + K  L  M  S E+    +  +  G    A  
Sbjct: 401 KFTSGNDILLPAFSSSATNFATLGRIAELKSNLQAMVTSAEWNECSYSEEPSGLVMNA-- 458

Query: 194 IVNDKELWAKSA 205
            + D+  W   A
Sbjct: 459 -LTDEAFWKAVA 469


>AT4G15020.1 | Symbols:  | hAT transposon superfamily |
           chr4:8575806-8578372 FORWARD LENGTH=768
          Length = 768

 Score = 97.1 bits (240), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 87/192 (45%), Gaps = 4/192 (2%)

Query: 14  IMNFLVYSSKGKVFLNSIDVSGAATRDTDFYFQWLDKIXXXXXXXXXXXXXTDNEATLKA 73
           ++NFLVY  +  VFL S+D S   +   D  F+ L ++             T  +     
Sbjct: 282 VLNFLVYCPEKVVFLKSVDASEVLS-SADKLFELLSELVEEVGSTNVVQVITKCDDYYVD 340

Query: 74  TIQKLVEKRPHLYWSACAAHCLDLCLEDIGKKKNVQAVLNDANTVTNFIYNHLWTVSLMK 133
             ++L+   P LYW  CAAHC+D  LE+ GK   +   +  A  +T F+YNH   ++LM 
Sbjct: 341 AGKRLMLVYPSLYWVPCAAHCIDQMLEEFGKLGWISETIEQAQAITRFVYNHSGVLNLMW 400

Query: 134 KFTNDRELFRPGITRFATQFLPLQEIVKQKDGLTKMFDSQEFKRSQFGRDKYGFAFEAQE 193
           KFT+  ++  P  +  AT F  L  I + K  L  M  S E+    +  +  G    A  
Sbjct: 401 KFTSGNDILLPAFSSSATNFATLGRIAELKSNLQAMVTSAEWNECSYSEEPSGLVMNA-- 458

Query: 194 IVNDKELWAKSA 205
            + D+  W   A
Sbjct: 459 -LTDEAFWKAVA 469


>AT1G43260.1 | Symbols:  | hAT transposon superfamily protein |
           chr1:16318253-16319234 FORWARD LENGTH=294
          Length = 294

 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 80/154 (51%), Gaps = 2/154 (1%)

Query: 14  IMNFLVYSSKGKVFLNSIDVSGAATRDTDFYFQWLDKIXXXXXXXXXXXXXTDNEATLKA 73
           IMN  +   +G +FL+S D     +   ++ F ++++                N AT   
Sbjct: 123 IMNLCINCKEGTMFLSSKDCFDD-SHTGEYIFAYVNEYCIKNLGGDHVVQVVTNNATNNI 181

Query: 74  TIQKLV-EKRPHLYWSACAAHCLDLCLEDIGKKKNVQAVLNDANTVTNFIYNHLWTVSLM 132
           T  KL+ E RP ++W+ CA H ++L +E I K      ++  A   T FIY H  T+S+M
Sbjct: 182 TAAKLLKEVRPTIFWTFCATHTINLMVEGISKLAMSDEIVKMAKAFTIFIYAHHQTLSMM 241

Query: 133 KKFTNDRELFRPGITRFATQFLPLQEIVKQKDGL 166
           + FT  R++ RPGI  FA+ F  L+ +V++++ L
Sbjct: 242 RSFTKRRDIVRPGIIGFASAFRTLKSLVEKEENL 275


>AT1G79740.1 | Symbols:  | hAT transposon superfamily |
           chr1:30004367-30006715 REVERSE LENGTH=651
          Length = 651

 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 82/175 (46%), Gaps = 2/175 (1%)

Query: 1   MCDGWTYGLNHTHIMNFLVYSSKGKVFLNSIDVSGAATRDTDFYFQWLDKIXXXXXXXXX 60
           + + WT   +   ++NF V S     F  S+D S +  +++       D +         
Sbjct: 181 IAEAWTDNKSRA-LINFSVSSPSRIFFHKSVDAS-SYFKNSKCLADLFDSVIQDIGQEHI 238

Query: 61  XXXXTDNEATLKATIQKLVEKRPHLYWSACAAHCLDLCLEDIGKKKNVQAVLNDANTVTN 120
                DN          L++    ++ S CA+ CL++ LE+  K   V   ++ A  ++ 
Sbjct: 239 VQIIMDNSFCYTGISNHLLQNYATIFVSPCASQCLNIILEEFSKVDWVNQCISQAQVISK 298

Query: 121 FIYNHLWTVSLMKKFTNDRELFRPGITRFATQFLPLQEIVKQKDGLTKMFDSQEF 175
           F+YN+   + L++K T  +++ R G+TR  + FL LQ ++KQK  L  MF+  E+
Sbjct: 299 FVYNNSPVLDLLRKLTGGQDIIRSGVTRSVSNFLSLQSMMKQKARLKHMFNCPEY 353


>AT1G36095.1 | Symbols:  | DNA binding | chr1:13491370-13492725
           REVERSE LENGTH=301
          Length = 301

 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 66/145 (45%)

Query: 39  RDTDFYFQWLDKIXXXXXXXXXXXXXTDNEATLKATIQKLVEKRPHLYWSACAAHCLDLC 98
           +D +  +  LD +              DN +      Q  +  RPHLYW+ CAAHC+ L 
Sbjct: 137 KDANMLYDHLDLMVDEVGEANVVKVVIDNASNYVKASQLSMANRPHLYWTPCAAHCIYLM 196

Query: 99  LEDIGKKKNVQAVLNDANTVTNFIYNHLWTVSLMKKFTNDRELFRPGITRFATQFLPLQE 158
           LEDIGK   V+ V+       ++IY H   V++M+K     +  + G       F  + +
Sbjct: 197 LEDIGKISEVKTVITQCIFKNDYIYGHTSLVNMMRKIHKRWKSAKIGCNTVCYVFHTIGQ 256

Query: 159 IVKQKDGLTKMFDSQEFKRSQFGRD 183
             KQ+  L     SQE+  S++ ++
Sbjct: 257 YHKQRKNLRNSATSQEWADSKWQKE 281


>AT5G31412.1 | Symbols:  | hAT transposon superfamily protein |
           chr5:11541463-11543768 REVERSE LENGTH=433
          Length = 433

 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 50/105 (47%), Gaps = 4/105 (3%)

Query: 1   MCDGWTYGLNHTHIMNFLVYSSKGKVFLNSIDVSGAATRDTDFY-FQWLDKIXXXXXXXX 59
           M D W+  +    IMN  V S  GK FL+S D S      T  Y F+++D+         
Sbjct: 137 MTDAWS-DMKRRSIMNLCVNSKGGKCFLSSKDAS--TNSHTGLYIFEYVDRCIADVGAKN 193

Query: 60  XXXXXTDNEATLKATIQKLVEKRPHLYWSACAAHCLDLCLEDIGK 104
                TDN        + L EKRP+++W+ C AH +DL LE I K
Sbjct: 194 VVQVVTDNALNNVTAAKMLKEKRPNIFWTGCVAHTVDLMLEAISK 238


>AT3G13020.1 | Symbols:  | hAT transposon superfamily protein |
           chr3:4166995-4168917 REVERSE LENGTH=605
          Length = 605

 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 85/211 (40%), Gaps = 12/211 (5%)

Query: 1   MCDGWTYGLNHTHIMNFLVYSSKGKVFLNSIDVSGAATRDTDFYFQWLDKIXXXXXXXXX 60
           + D W     H  +++F+     G V+L SIDVS     D       ++ +         
Sbjct: 197 LLDAWIDPKGHD-LVSFVADCPAGPVYLKSIDVS-VVKNDVTALLSLVNGLVEEVGVHNV 254

Query: 61  XXXXTDNEATLKATIQKLVEKRP-HLYWSACAAHCLDLCLEDIGKKKNVQAVLNDANTVT 119
                 + +     + KL       ++WS   +HC +L L  IGK ++   +L+  NT+ 
Sbjct: 255 TQIIACSTSGWVGELGKLFSGHDREVFWSVSLSHCFELMLVKIGKMRSFGDILDKVNTIW 314

Query: 120 NFIYNHLWTVSLMKKFTNDREL-FRPGITRFATQFLPLQEIVKQKDGLTKMFDSQEFKRS 178
            FI N+   + + +  ++ +++        F   +L L+ + K K  L  MF S  +K+ 
Sbjct: 315 EFINNNPSALKIYRDQSHGKDITVSSSEFEFVKPYLILKSVFKAKKNLAAMFASSVWKKE 374

Query: 179 QFGRDKYGFAFEAQEIVNDKELWAKSADILK 209
           +              +VND   W    +ILK
Sbjct: 375 E--------GKSVSNLVNDSSFWEAVEEILK 397


>AT5G33406.1 | Symbols:  | hAT dimerisation domain-containing
           protein / transposase-related | chr5:12676126-12678403
           REVERSE LENGTH=509
          Length = 509

 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 36/61 (59%)

Query: 131 LMKKFTNDRELFRPGITRFATQFLPLQEIVKQKDGLTKMFDSQEFKRSQFGRDKYGFAFE 190
           +M+KFT  R L RP ITR AT F+ L +  + KD L KM  S E+  S++ ++  G   +
Sbjct: 1   MMRKFTGGRNLHRPAITRIATSFITLAQFHRLKDNLRKMVHSDEWNASKWTKEAGGMKIK 60

Query: 191 A 191
           +
Sbjct: 61  S 61