Miyakogusa Predicted Gene

Lj1g3v0627680.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0627680.1 tr|G7KDW6|G7KDW6_MEDTR DNA polymerase beta
OS=Medicago truncatula GN=MTR_5g040170 PE=4 SV=1,81.94,0,no
description,NULL; no description,DNA-directed DNA polymerase, family
X, beta-like, N-terminal; se,CUFF.26107.1
         (519 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G10520.1 | Symbols:  | DNA polymerase lambda (POLL) | chr1:34...   676   0.0  

>AT1G10520.1 | Symbols:  | DNA polymerase lambda (POLL) |
           chr1:3465964-3469248 FORWARD LENGTH=529
          Length = 529

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/503 (66%), Positives = 393/503 (78%), Gaps = 10/503 (1%)

Query: 18  FKIWKQRLVQMGAVIE-DRFSKRVTHLFAMDSHALLHELDSHRLSRFKGRVLLYQWLEDS 76
            +IWKQ+LVQMGAVIE DR +K+VTH+ AM+  ALLH+    RLS F  R++LYQWLEDS
Sbjct: 36  LQIWKQKLVQMGAVIEEDRVTKKVTHVLAMNLEALLHKFGKERLSHFTARLMLYQWLEDS 95

Query: 77  LKSGEKLPEDMYVLKLDTQDQVIPDKSVDPEPTDRSISSDPQRLQSKKMKSSSEDTQILN 136
           L SGEK  ED+YVLK+D+++   P KS+ P  +     S PQ+    +    + D + + 
Sbjct: 96  LTSGEKANEDLYVLKIDSEEVDKPKKSL-PAISGSEDQSSPQK--RTRYSPDAGDFKGVE 152

Query: 137 LDSNEDRGENXXXXXXXXXXXXGEVDSLSYANTRLQHLDAENEASSLPYCPPDLNKKITE 196
             SN     +               + ++   T  Q     +E++S+ Y PPDLN+ ITE
Sbjct: 153 SHSNTQGSPDSPTSCSVPSTSASPGEGIAETPTSPQ-----SESTSV-YKPPDLNRNITE 206

Query: 197 IFGKLINIYRALGDDRRSFSYHKAIAVIEKLPFKIESTDQLKNLPSIGKSMKDHIQEIIT 256
           IFGKLINIYRALG+DRRSFSY+KAI VIEK P +IES DQLK+LP IGK+M+DHIQEI+T
Sbjct: 207 IFGKLINIYRALGEDRRSFSYYKAIPVIEKFPTRIESVDQLKHLPGIGKAMRDHIQEIVT 266

Query: 257 TGKLSKLEHFETDEKVRTISLFGEVWGVGPATSLKLYEKGHRTLDDLRNDDSLTNAQKLG 316
           TGKLSKLEHFETDEKVRTISLFGEVWGVGPAT+LKLYEKGHRTL+DL+N+DSLT+AQKLG
Sbjct: 267 TGKLSKLEHFETDEKVRTISLFGEVWGVGPATALKLYEKGHRTLEDLKNEDSLTHAQKLG 326

Query: 317 LKYFDDIRQRIPRHEVQEMERILQKVGEDVLPGVLIVCGGSYRRGKTTCGDIDIIITHPD 376
           LKYFDDI+ RIPR EVQEME++LQ+VGE+ LPGV IVCGGSYRRGK TCGD+DI++THPD
Sbjct: 327 LKYFDDIKTRIPRQEVQEMEQLLQRVGEETLPGVNIVCGGSYRRGKATCGDLDIVVTHPD 386

Query: 377 GKSHKGFLPKFVKHLKDMNFLREDLIFSNHSEEGTDSGVDTYFGFCTYPGRELRHRIDLK 436
           G+SHKGFL KFVK LK+MNFLREDLIFS HSEEGTDSGVDTYFG CTYPG+ELR RID K
Sbjct: 387 GQSHKGFLTKFVKRLKEMNFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGQELRRRIDFK 446

Query: 437 VYPRDIYAFGLVAWTGNDVLNRRLRLEADSKGFRLDDTGLFPATMXXXXXXXXXXXXXLK 496
           VYPRDIY+FGL+AWTGNDVLNRRLRL A+SKG+RLDDTGLFPAT              LK
Sbjct: 447 VYPRDIYSFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATHSSSGNRGARGTASLK 506

Query: 497 FDTEKEVFDFLGFPWLEPHERNL 519
             TEK+VFDFLGFPWLEPHERNL
Sbjct: 507 LSTEKQVFDFLGFPWLEPHERNL 529