Miyakogusa Predicted Gene

Lj1g3v0627420.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0627420.1 tr|G7I7Z0|G7I7Z0_MEDTR Cleavage and
polyadenylation specificity factor subunit OS=Medicago
truncatul,63.53,6e-19,IMMUNOGLOBULIN-BINDING PROTEIN 1,NULL;
IMMUNOGLOBULIN-BINDING PROTEIN 1,TAP42-like protein;
TAP42,TA,gene.g29974.t1.1
         (137 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G53000.1 | Symbols: TAP46 | 2A phosphatase associated protein...   182   7e-47

>AT5G53000.1 | Symbols: TAP46 | 2A phosphatase associated protein of
           46 kD | chr5:21485654-21487869 REVERSE LENGTH=405
          Length = 405

 Score =  182 bits (461), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 93/140 (66%), Positives = 109/140 (77%), Gaps = 5/140 (3%)

Query: 1   MGDTRVEELPLPALFEQAREIHATAN---ADQKVVKKGYETLQKCEDMVNKLGLFSSNET 57
           MG   +EE+PL  LFEQAR+IH  A+    DQ VVKKG E  QKCEDM+ KL LFSSNET
Sbjct: 1   MGGLAMEEMPLSVLFEQARKIHLAASESGVDQDVVKKGCEMFQKCEDMIGKLALFSSNET 60

Query: 58  KEDISTGNLKYILALVPFYLAEMTEQIAQDDRIQIVKASQTKLKEFISFCEAMELVPKEE 117
           KEDIST NLKY+L  VP+YLAE+TE+I Q+DRIQIVKAS  KLKEF SFCEAMELVP EE
Sbjct: 61  KEDISTNNLKYLL--VPYYLAELTEKIIQEDRIQIVKASYAKLKEFFSFCEAMELVPDEE 118

Query: 118 LESYTQGAPKSVADQRARKL 137
           LE+ ++G   + AD+RA K+
Sbjct: 119 LEASSRGGSGAPADRRALKI 138