Miyakogusa Predicted Gene
- Lj1g3v0579550.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v0579550.1 Non Chatacterized Hit- tr|I3SPX8|I3SPX8_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=4
SV=1,82.98,0.00000000000006,CCT,CCT domain,CUFF.26224.1
(124 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G15840.1 | Symbols: CO, FG | B-box type zinc finger protein w... 55 1e-08
AT5G24930.1 | Symbols: ATCOL4, COL4 | CONSTANS-like 4 | chr5:858... 55 1e-08
AT2G24790.1 | Symbols: COL3, ATCOL3 | CONSTANS-like 3 | chr2:105... 54 2e-08
AT5G57660.1 | Symbols: ATCOL5, COL5 | CONSTANS-like 5 | chr5:233... 54 4e-08
AT5G15850.1 | Symbols: COL1, ATCOL1 | CONSTANS-like 1 | chr5:517... 49 6e-07
AT3G02380.1 | Symbols: COL2, ATCOL2 | CONSTANS-like 2 | chr3:487... 49 7e-07
>AT5G15840.1 | Symbols: CO, FG | B-box type zinc finger protein with
CCT domain | chr5:5171343-5172697 REVERSE LENGTH=373
Length = 373
Score = 55.1 bits (131), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/28 (89%), Positives = 25/28 (89%)
Query: 13 TQLCGMDREARVLRYREKRKNRKFEKTI 40
TQL MDREARVLRYREKRK RKFEKTI
Sbjct: 299 TQLSPMDREARVLRYREKRKTRKFEKTI 326
>AT5G24930.1 | Symbols: ATCOL4, COL4 | CONSTANS-like 4 |
chr5:8589325-8590949 FORWARD LENGTH=406
Length = 406
Score = 54.7 bits (130), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/48 (58%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Query: 8 GSQPATQLCGMDREARVLRYREKRKNRKFEKTIFHPGYDLMSSYANKR 55
G+Q A L +REARV+RYREKRKNRKFEKTI Y +YA R
Sbjct: 327 GTQRAVPLTSAEREARVMRYREKRKNRKFEKTI---RYASRKAYAEMR 371
>AT2G24790.1 | Symbols: COL3, ATCOL3 | CONSTANS-like 3 |
chr2:10566959-10567946 FORWARD LENGTH=294
Length = 294
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/30 (83%), Positives = 26/30 (86%)
Query: 11 PATQLCGMDREARVLRYREKRKNRKFEKTI 40
PA QL +REARVLRYREKRKNRKFEKTI
Sbjct: 220 PAVQLSPAEREARVLRYREKRKNRKFEKTI 249
>AT5G57660.1 | Symbols: ATCOL5, COL5 | CONSTANS-like 5 |
chr5:23355573-23356729 FORWARD LENGTH=355
Length = 355
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/40 (67%), Positives = 28/40 (70%), Gaps = 3/40 (7%)
Query: 1 MVVSGGGGSQPATQLCGMDREARVLRYREKRKNRKFEKTI 40
+ S GG Q MDREARVLRYREKRKNRKFEKTI
Sbjct: 269 ITSSTTGGDH---QASSMDREARVLRYREKRKNRKFEKTI 305
>AT5G15850.1 | Symbols: COL1, ATCOL1 | CONSTANS-like 1 |
chr5:5176297-5177473 REVERSE LENGTH=355
Length = 355
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/45 (62%), Positives = 30/45 (66%), Gaps = 3/45 (6%)
Query: 11 PATQLCGMDREARVLRYREKRKNRKFEKTIFHPGYDLMSSYANKR 55
PA L DREARVLRYREK+K RKFEKTI Y +YA KR
Sbjct: 277 PAQMLSPRDREARVLRYREKKKMRKFEKTI---RYASRKAYAEKR 318
>AT3G02380.1 | Symbols: COL2, ATCOL2 | CONSTANS-like 2 |
chr3:487438-488624 REVERSE LENGTH=347
Length = 347
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 27/36 (75%)
Query: 5 GGGGSQPATQLCGMDREARVLRYREKRKNRKFEKTI 40
G +Q QL M+REARVLRYREK+K RKF+KTI
Sbjct: 263 SGPPTQVVQQLTPMEREARVLRYREKKKTRKFDKTI 298