Miyakogusa Predicted Gene

Lj1g3v0558030.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0558030.1 Non Chatacterized Hit- tr|E1ZEZ5|E1ZEZ5_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,48.41,2e-19,seg,NULL; DUF1118,Protein of unknown function
DUF1118,CUFF.25962.1
         (173 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G08050.1 | Symbols:  | Protein of unknown function (DUF1118) ...   109   1e-24
AT1G74730.1 | Symbols:  | Protein of unknown function (DUF1118) ...    47   6e-06

>AT5G08050.1 | Symbols:  | Protein of unknown function (DUF1118) |
           chr5:2578418-2578964 FORWARD LENGTH=158
          Length = 158

 Score =  109 bits (272), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/151 (46%), Positives = 81/151 (53%), Gaps = 6/151 (3%)

Query: 29  SPFLVKSMATPKPPPS------VTKKNSGTAPIKLLTRMEQLKLLSKAEKAGLLSAAEKS 82
           S   V SMA  KP PS       +KK++ T  +KLLTR+EQLKLL+KAEKAGLLS AEKS
Sbjct: 8   SSLTVHSMANKKPSPSAATRTITSKKSTATPQVKLLTRVEQLKLLTKAEKAGLLSLAEKS 67

Query: 83  GLSLSTIEKLGLLSKAEELGVLSAATDXXXXXXXXXXXXXXXXXXXXFVYLVPEDNLGEX 142
           G SLSTIE+LGLL+KAEE GVLSAAT+                    F Y+VPED   E 
Sbjct: 68  GFSLSTIERLGLLTKAEEFGVLSAATNPETPGTLFTLSLGLLLLGPVFAYVVPEDYTWEV 127

Query: 143 XXXXXXXXXXXXXXXXXXXXXXXXXNLQKSN 173
                                    NLQKS+
Sbjct: 128 VIQVLVALLSVLGGSAAFAASGFVSNLQKSD 158


>AT1G74730.1 | Symbols:  | Protein of unknown function (DUF1118) |
           chr1:28078995-28079831 FORWARD LENGTH=198
          Length = 198

 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 35/46 (76%)

Query: 55  IKLLTRMEQLKLLSKAEKAGLLSAAEKSGLSLSTIEKLGLLSKAEE 100
           + +  ++E+ K+LS  EK+GLLS AE  GL+LS++EKL + SKAE+
Sbjct: 78  VDVFKKLEKRKVLSNVEKSGLLSKAEGLGLTLSSLEKLKVFSKAED 123