Miyakogusa Predicted Gene

Lj1g3v0546880.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0546880.1 Non Chatacterized Hit- tr|I1KD08|I1KD08_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,60.56,0.00000000000007,no description,Zinc finger,
RING/FYVE/PHD-type; FYVE/PHD zinc finger,Zinc finger, FYVE/PHD-type;
seg,gene.g29788.t1.1
         (402 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G02890.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...    57   2e-08
AT5G16680.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...    54   3e-07
AT4G17850.1 | Symbols:  | BEST Arabidopsis thaliana protein matc...    53   4e-07
AT5G61120.1 | Symbols:  | BEST Arabidopsis thaliana protein matc...    50   3e-06
AT5G61100.1 | Symbols:  | BEST Arabidopsis thaliana protein matc...    50   4e-06
AT5G61110.1 | Symbols:  | zinc ion binding | chr5:24581078-24581...    50   4e-06

>AT3G02890.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr3:640828-645303 FORWARD LENGTH=994
          Length = 994

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 13  VEPCNICGDVGYAEVIVVCSKCNVTREHGYCMRICLTDIPDD-WCCETCQ 61
           V+ C+ CGD G  +++ +CS+C+   EH YCMR+ L  +P   W CE C+
Sbjct: 212 VKVCDTCGDAGREDLLAICSRCSDGAEHTYCMRVMLKKVPKGYWLCEECK 261


>AT5G16680.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr5:5467534-5472956 REVERSE LENGTH=1311
          Length = 1311

 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 30/44 (68%), Gaps = 1/44 (2%)

Query: 13  VEPCNICGDVGYAEVIVVCSKCNVTREHGYCMRICLTDIPD-DW 55
           V+ C+ICGD G  +++ +CS C+   EH YCMR  L ++P+ DW
Sbjct: 283 VKVCDICGDAGREDLLAICSGCSDGAEHTYCMREMLDEVPEGDW 326


>AT4G17850.1 | Symbols:  | BEST Arabidopsis thaliana protein match
          is: RING/FYVE/PHD zinc finger superfamily protein
          (TAIR:AT3G02890.1); Has 200 Blast hits to 194 proteins
          in 51 species: Archae - 0; Bacteria - 0; Metazoa - 61;
          Fungi - 11; Plants - 116; Viruses - 0; Other Eukaryotes
          - 12 (source: NCBI BLink). | chr4:9922990-9923850
          FORWARD LENGTH=187
          Length = 187

 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 26/45 (57%)

Query: 16 CNICGDVGYAEVIVVCSKCNVTREHGYCMRICLTDIPDDWCCETC 60
          C+ CGD GY  ++V+C  C V  EH YCM   +  +PD W C  C
Sbjct: 40 CDTCGDQGYEYLLVICCNCGVGAEHTYCMMEKIDKVPDSWSCYDC 84


>AT5G61120.1 | Symbols:  | BEST Arabidopsis thaliana protein match
           is: Polynucleotidyl transferase, ribonuclease H-like
           superfamily protein (TAIR:AT5G61090.1); Has 125 Blast
           hits to 115 proteins in 16 species: Archae - 0; Bacteria
           - 0; Metazoa - 22; Fungi - 0; Plants - 102; Viruses - 0;
           Other Eukaryotes - 1 (source: NCBI BLink). |
           chr5:24582486-24585030 REVERSE LENGTH=426
          Length = 426

 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 20/128 (15%)

Query: 16  CNICGDVGYAEVIVVCSKCNVTREHGYCMRICLTDIPDDWCCETCQAK---NGTTSPC-- 70
           C  CG  G+   +V CSKC +  EH YCMR    +    + C  C  +   N  TS    
Sbjct: 12  CETCGHQGWKNSLVTCSKCRIACEHCYCMRESSFETSIHFVCADCSMRPVQNKFTSDSIK 71

Query: 71  --------KVDQNFSPQAPKRQRDVKAGKVKFLPEDEVIKLSSGNFPAKPIRGSSSFNIA 122
                   KV    S   PK ++  +  ++K +  +EV KL+ G   +KP     +F + 
Sbjct: 72  GVPRSIRNKVRVESSNPVPKWKKIPETSRMKLISPEEVKKLACGGSTSKP-----TFRVP 126

Query: 123 RKAPVASK 130
           R  PV+++
Sbjct: 127 R--PVSAR 132


>AT5G61100.1 | Symbols:  | BEST Arabidopsis thaliana protein match
          is: zinc ion binding (TAIR:AT5G61110.1); Has 1807 Blast
          hits to 1807 proteins in 277 species: Archae - 0;
          Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
          Viruses - 0; Other Eukaryotes - 339 (source: NCBI
          BLink). | chr5:24579170-24580327 REVERSE LENGTH=227
          Length = 227

 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 26/48 (54%)

Query: 14 EPCNICGDVGYAEVIVVCSKCNVTREHGYCMRICLTDIPDDWCCETCQ 61
          +PC +CG      +++ C  C  TREH YC R+    +P  W CE C+
Sbjct: 32 KPCEVCGSDANELLMMTCFMCRDTREHTYCARVMFQRVPRLWICEECR 79


>AT5G61110.1 | Symbols:  | zinc ion binding |
          chr5:24581078-24581991 REVERSE LENGTH=161
          Length = 161

 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 25/47 (53%)

Query: 15 PCNICGDVGYAEVIVVCSKCNVTREHGYCMRICLTDIPDDWCCETCQ 61
          PC +CG       I+ C  C  TREH YC R+ L  +P  W CE C+
Sbjct: 32 PCEVCGSNANDHAIMTCFLCRDTREHIYCARVHLRSVPRMWICEECR 78