Miyakogusa Predicted Gene
- Lj1g3v0524400.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v0524400.1 tr|G7J8V5|G7J8V5_MEDTR 50S ribosomal protein L13
OS=Medicago truncatula GN=MTR_3g082760 PE=4
SV=1,75,0.00000001,rplM_bact: ribosomal protein L13,Ribosomal protein
L13, bacterial-type; RIBOSOMAL_L13,Ribosomal prot,CUFF.25940.1
(198 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G01790.2 | Symbols: | Ribosomal protein L13 family protein |... 227 4e-60
AT3G01790.1 | Symbols: | Ribosomal protein L13 family protein |... 227 4e-60
AT1G78630.1 | Symbols: emb1473 | Ribosomal protein L13 family pr... 86 2e-17
>AT3G01790.2 | Symbols: | Ribosomal protein L13 family protein |
chr3:283880-285583 REVERSE LENGTH=205
Length = 205
Score = 227 bits (579), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 104/148 (70%), Positives = 120/148 (81%)
Query: 8 NMKKAAAGLRRINLDGLRWRVFDAKGQVLGRLASQIATVVQGKDKPTYAPNRDDGDMCIV 67
N+KKA AG++RINLDGLRWRVFDA+GQVLGRLASQI+TV+Q KDKPTY PNRDDGD+CIV
Sbjct: 14 NLKKAVAGIKRINLDGLRWRVFDARGQVLGRLASQISTVLQAKDKPTYCPNRDDGDICIV 73
Query: 68 LNAKDVCVTGRKFKDKVYYWHTGYVGGLKQRTLKEQMAKDPTEVIRKAILRMLPRNXXXX 127
LNAK++ TGRK DK Y WHTGY+G LK+R+LK+QMAKDPTEVIRKA+ RMLP N
Sbjct: 74 LNAKEIGFTGRKLTDKFYRWHTGYIGHLKERSLKDQMAKDPTEVIRKAVWRMLPSNNLRD 133
Query: 128 XXXXXXXIFPGSEHPFADRPLEQYEMPP 155
IF G EHPF D+PLE + MPP
Sbjct: 134 DRDRKLRIFEGGEHPFGDKPLEPFVMPP 161
>AT3G01790.1 | Symbols: | Ribosomal protein L13 family protein |
chr3:283880-285583 REVERSE LENGTH=205
Length = 205
Score = 227 bits (579), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 104/148 (70%), Positives = 120/148 (81%)
Query: 8 NMKKAAAGLRRINLDGLRWRVFDAKGQVLGRLASQIATVVQGKDKPTYAPNRDDGDMCIV 67
N+KKA AG++RINLDGLRWRVFDA+GQVLGRLASQI+TV+Q KDKPTY PNRDDGD+CIV
Sbjct: 14 NLKKAVAGIKRINLDGLRWRVFDARGQVLGRLASQISTVLQAKDKPTYCPNRDDGDICIV 73
Query: 68 LNAKDVCVTGRKFKDKVYYWHTGYVGGLKQRTLKEQMAKDPTEVIRKAILRMLPRNXXXX 127
LNAK++ TGRK DK Y WHTGY+G LK+R+LK+QMAKDPTEVIRKA+ RMLP N
Sbjct: 74 LNAKEIGFTGRKLTDKFYRWHTGYIGHLKERSLKDQMAKDPTEVIRKAVWRMLPSNNLRD 133
Query: 128 XXXXXXXIFPGSEHPFADRPLEQYEMPP 155
IF G EHPF D+PLE + MPP
Sbjct: 134 DRDRKLRIFEGGEHPFGDKPLEPFVMPP 161
>AT1G78630.1 | Symbols: emb1473 | Ribosomal protein L13 family
protein | chr1:29575997-29577406 FORWARD LENGTH=241
Length = 241
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 69/125 (55%), Gaps = 1/125 (0%)
Query: 26 WRVFDAKGQVLGRLASQIATVVQGKDKPTYAPNRDDGDMCIVLNAKDVCVTGRKFKDKVY 85
W V DA ++LGRLAS IA ++GK+ +Y P+ D G IV+NA+ V V+G+K K+Y
Sbjct: 105 WFVVDATDKILGRLASTIANHIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLY 164
Query: 86 YWHTGYVGGLKQRTLKEQMAKDPTEVIRKAILRMLPRNXXXXXXXXXXXIFPGSEHPF-A 144
H+G GG+ T + + P ++ A+ MLP+ ++ G +HP A
Sbjct: 165 RRHSGRPGGMTVETFDQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEA 224
Query: 145 DRPLE 149
+PL+
Sbjct: 225 QKPLD 229