Miyakogusa Predicted Gene

Lj1g3v0524400.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0524400.1 tr|G7J8V5|G7J8V5_MEDTR 50S ribosomal protein L13
OS=Medicago truncatula GN=MTR_3g082760 PE=4
SV=1,75,0.00000001,rplM_bact: ribosomal protein L13,Ribosomal protein
L13, bacterial-type; RIBOSOMAL_L13,Ribosomal prot,CUFF.25940.1
         (198 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G01790.2 | Symbols:  | Ribosomal protein L13 family protein |...   227   4e-60
AT3G01790.1 | Symbols:  | Ribosomal protein L13 family protein |...   227   4e-60
AT1G78630.1 | Symbols: emb1473 | Ribosomal protein L13 family pr...    86   2e-17

>AT3G01790.2 | Symbols:  | Ribosomal protein L13 family protein |
           chr3:283880-285583 REVERSE LENGTH=205
          Length = 205

 Score =  227 bits (579), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 104/148 (70%), Positives = 120/148 (81%)

Query: 8   NMKKAAAGLRRINLDGLRWRVFDAKGQVLGRLASQIATVVQGKDKPTYAPNRDDGDMCIV 67
           N+KKA AG++RINLDGLRWRVFDA+GQVLGRLASQI+TV+Q KDKPTY PNRDDGD+CIV
Sbjct: 14  NLKKAVAGIKRINLDGLRWRVFDARGQVLGRLASQISTVLQAKDKPTYCPNRDDGDICIV 73

Query: 68  LNAKDVCVTGRKFKDKVYYWHTGYVGGLKQRTLKEQMAKDPTEVIRKAILRMLPRNXXXX 127
           LNAK++  TGRK  DK Y WHTGY+G LK+R+LK+QMAKDPTEVIRKA+ RMLP N    
Sbjct: 74  LNAKEIGFTGRKLTDKFYRWHTGYIGHLKERSLKDQMAKDPTEVIRKAVWRMLPSNNLRD 133

Query: 128 XXXXXXXIFPGSEHPFADRPLEQYEMPP 155
                  IF G EHPF D+PLE + MPP
Sbjct: 134 DRDRKLRIFEGGEHPFGDKPLEPFVMPP 161


>AT3G01790.1 | Symbols:  | Ribosomal protein L13 family protein |
           chr3:283880-285583 REVERSE LENGTH=205
          Length = 205

 Score =  227 bits (579), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 104/148 (70%), Positives = 120/148 (81%)

Query: 8   NMKKAAAGLRRINLDGLRWRVFDAKGQVLGRLASQIATVVQGKDKPTYAPNRDDGDMCIV 67
           N+KKA AG++RINLDGLRWRVFDA+GQVLGRLASQI+TV+Q KDKPTY PNRDDGD+CIV
Sbjct: 14  NLKKAVAGIKRINLDGLRWRVFDARGQVLGRLASQISTVLQAKDKPTYCPNRDDGDICIV 73

Query: 68  LNAKDVCVTGRKFKDKVYYWHTGYVGGLKQRTLKEQMAKDPTEVIRKAILRMLPRNXXXX 127
           LNAK++  TGRK  DK Y WHTGY+G LK+R+LK+QMAKDPTEVIRKA+ RMLP N    
Sbjct: 74  LNAKEIGFTGRKLTDKFYRWHTGYIGHLKERSLKDQMAKDPTEVIRKAVWRMLPSNNLRD 133

Query: 128 XXXXXXXIFPGSEHPFADRPLEQYEMPP 155
                  IF G EHPF D+PLE + MPP
Sbjct: 134 DRDRKLRIFEGGEHPFGDKPLEPFVMPP 161


>AT1G78630.1 | Symbols: emb1473 | Ribosomal protein L13 family
           protein | chr1:29575997-29577406 FORWARD LENGTH=241
          Length = 241

 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 69/125 (55%), Gaps = 1/125 (0%)

Query: 26  WRVFDAKGQVLGRLASQIATVVQGKDKPTYAPNRDDGDMCIVLNAKDVCVTGRKFKDKVY 85
           W V DA  ++LGRLAS IA  ++GK+  +Y P+ D G   IV+NA+ V V+G+K   K+Y
Sbjct: 105 WFVVDATDKILGRLASTIANHIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLY 164

Query: 86  YWHTGYVGGLKQRTLKEQMAKDPTEVIRKAILRMLPRNXXXXXXXXXXXIFPGSEHPF-A 144
             H+G  GG+   T  +   + P  ++  A+  MLP+            ++ G +HP  A
Sbjct: 165 RRHSGRPGGMTVETFDQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEA 224

Query: 145 DRPLE 149
            +PL+
Sbjct: 225 QKPLD 229