Miyakogusa Predicted Gene

Lj1g3v0524360.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0524360.1 Non Chatacterized Hit- tr|I3LBW5|I3LBW5_PIG
Uncharacterized protein OS=Sus scrofa GN=PIN4 PE=4
SV=1,44.52,4e-19,PPIC_PPIASE_2,Peptidyl-prolyl cis-trans isomerase,
PpiC-type; seg,NULL; FKBP-like,NULL; no descripti,CUFF.25939.1
         (145 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G26550.1 | Symbols:  | FKBP-like peptidyl-prolyl cis-trans is...   214   2e-56
AT2G18040.1 | Symbols: PIN1AT | peptidylprolyl cis/trans isomera...    57   6e-09

>AT1G26550.1 | Symbols:  | FKBP-like peptidyl-prolyl cis-trans
           isomerase family protein | chr1:9171800-9172716 FORWARD
           LENGTH=142
          Length = 142

 Score =  214 bits (545), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 100/104 (96%), Positives = 101/104 (97%)

Query: 42  TCTYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPPAEFAKIAQEYSECPSGKKGGDL 101
           TCTYVKARH+LCEKQGKINEAYKKLQDGWLSNGDKVPPAEFAKIA EYSECPSGKKGGDL
Sbjct: 39  TCTYVKARHVLCEKQGKINEAYKKLQDGWLSNGDKVPPAEFAKIAAEYSECPSGKKGGDL 98

Query: 102 GWFPRGKMAGPFQDVAFNTVVGATSAPFKSTHGYHIILSEGRKN 145
           GWFPRGKMAGPFQDVAFNT VG TSAPFKSTHGYHIILSEGRKN
Sbjct: 99  GWFPRGKMAGPFQDVAFNTPVGVTSAPFKSTHGYHIILSEGRKN 142


>AT2G18040.1 | Symbols: PIN1AT | peptidylprolyl cis/trans isomerase,
           NIMA-interacting 1 | chr2:7842346-7843537 FORWARD
           LENGTH=119
          Length = 119

 Score = 56.6 bits (135), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 51/109 (46%), Gaps = 16/109 (14%)

Query: 46  VKARHILCEKQGKINEAYKKLQDGWLS---------------NGDKVP-PAEFAKIAQEY 89
           VKA HIL + QG   +A  K  +G +                  D V   A F ++A   
Sbjct: 7   VKASHILIKHQGSRRKASWKDPEGKIILTTTREAAVEQLKSIREDIVSGKANFEEVATRV 66

Query: 90  SECPSGKKGGDLGWFPRGKMAGPFQDVAFNTVVGATSAPFKSTHGYHII 138
           S+C S K+GGDLG F RG+M  PF++  +   VG  S    +  G HII
Sbjct: 67  SDCSSAKRGGDLGSFGRGQMQKPFEEATYALKVGDISDIVDTDSGVHII 115