Miyakogusa Predicted Gene

Lj1g3v0465670.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0465670.1 Non Chatacterized Hit- tr|F6GTZ3|F6GTZ3_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,36.45,0.00000000003,seg,NULL,CUFF.25896.1
         (378 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G62550.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   157   2e-38

>AT5G62550.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: plasma membrane;
           EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9
           growth stages; Has 14949 Blast hits to 9947 proteins in
           971 species: Archae - 43; Bacteria - 3248; Metazoa -
           4424; Fungi - 1542; Plants - 562; Viruses - 55; Other
           Eukaryotes - 5075 (source: NCBI BLink). |
           chr5:25105839-25107875 REVERSE LENGTH=487
          Length = 487

 Score =  157 bits (396), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 110/235 (46%), Positives = 131/235 (55%), Gaps = 35/235 (14%)

Query: 12  SATSSGNSSRPKLQRYALRSVTKSKEEKPSAPNSSES---KRGGNASTVSKSVGVLDFSA 68
           S+ +SGNS   KL RY LRS  +SKE KP  P+ S S   +R    S VS+S  VLD S 
Sbjct: 10  SSAASGNSINSKL-RYPLRSALRSKEGKPPVPDFSASSMPRRARVVSAVSQSTTVLDLSG 68

Query: 69  KDKSGSAK-PPRRFSNPAKASPTPGHKVA----------------SNITPISETRTGRTP 111
           K      K PPRR S P K  PT    V                 S I P S   T    
Sbjct: 69  KKSVDRTKLPPRRLSIPNK--PTSNSSVKSVSSSVTSLSEVKPKRSRIVPRSFNET---- 122

Query: 112 YGQGRGKTTPISEISRTS-SRVKLNLLTSPSYWLNQIKLSESAAKHSISLGFFKLALEAG 170
                  TTP+S   R+S +R K+  L+S +YWL  IKL+ES AKHSISLGFFKLAL AG
Sbjct: 123 -------TTPVSSNLRSSVTRKKVEDLSSSTYWLTHIKLAESVAKHSISLGFFKLALHAG 175

Query: 171 CEPLKSMQEELKSYVSRHQLAELGESVKELLERYNISENIEQLQVSETISQVPED 225
           CEPL  M+EELK Y  R+ +  L +++KEL E YNISE   Q+QVSET S V E+
Sbjct: 176 CEPLDKMKEELKLYARRNNMDGLADAMKELSELYNISEESNQVQVSETSSVVAEE 230