Miyakogusa Predicted Gene

Lj1g3v0449050.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0449050.1 Non Chatacterized Hit- tr|I1IG18|I1IG18_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,66.67,0.0000000001,seg,NULL,CUFF.25875.1
         (245 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G18900.2 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   117   9e-27
AT1G18900.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   117   9e-27
AT1G18900.3 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   117   1e-26
AT1G74750.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   112   3e-25

>AT1G18900.2 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:6529778-6532360 FORWARD
           LENGTH=860
          Length = 860

 Score =  117 bits (292), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 89/249 (35%), Positives = 134/249 (53%), Gaps = 19/249 (7%)

Query: 4   MLRGKQISSLSSTARSFFLSGSRCNGAEGNSCTCPEDETCVSRRQR-RKNEDLLVQKPSS 62
           M+R K IS+LSSTARSFFL+GSR +  +GNSC   +DE CVS+RQ+ RK      ++PSS
Sbjct: 1   MIRAKHISNLSSTARSFFLNGSRTSVTDGNSCVYSDDENCVSKRQQLRKEAGQTEKRPSS 60

Query: 63  LVSKTTSQVKGTLVSGNSASSANAPCI-RKAESVDQSSALVQ-VRSTLGPSSKSDTVTYA 120
           ++ K +  V G ++ G        P + +K +   + S L Q V S+     KS +V YA
Sbjct: 61  ILPKPS--VVGCILPG----EVTKPVVPKKVDDFGRPSLLPQHVSSSPALPLKSHSVNYA 114

Query: 121 CVVDGVQNHAVHSSPLDSEQFYRAGIAAVNFLSDFVNNKFPSSDG----MGILSHSKNYV 176
             V   +     SS    +Q ++AGI AVNFLSD  N K PS DG     G+    K+ +
Sbjct: 115 STVVREEVEGKASSEPIGDQIFKAGIVAVNFLSDLSNCKIPSYDGGSDAFGL---PKSCM 171

Query: 177 VDAARALPNIRPASVKQIRKEDFTSVX--XXXXXXXXXXXXXAASSYHGAKGKVDKPNLG 234
           VD  R + +++ ++VK IR+E F  +                 +S++ GAK + ++    
Sbjct: 172 VDPTRPISSVKSSNVKAIRREHFAKIYPRSAAKESSVGTTRNPSSNFRGAK-EAERTGFV 230

Query: 235 KSFKHVASS 243
           K F+ V++S
Sbjct: 231 KGFRQVSNS 239


>AT1G18900.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:6529778-6532360 FORWARD
           LENGTH=860
          Length = 860

 Score =  117 bits (292), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 89/249 (35%), Positives = 134/249 (53%), Gaps = 19/249 (7%)

Query: 4   MLRGKQISSLSSTARSFFLSGSRCNGAEGNSCTCPEDETCVSRRQR-RKNEDLLVQKPSS 62
           M+R K IS+LSSTARSFFL+GSR +  +GNSC   +DE CVS+RQ+ RK      ++PSS
Sbjct: 1   MIRAKHISNLSSTARSFFLNGSRTSVTDGNSCVYSDDENCVSKRQQLRKEAGQTEKRPSS 60

Query: 63  LVSKTTSQVKGTLVSGNSASSANAPCI-RKAESVDQSSALVQ-VRSTLGPSSKSDTVTYA 120
           ++ K +  V G ++ G        P + +K +   + S L Q V S+     KS +V YA
Sbjct: 61  ILPKPS--VVGCILPG----EVTKPVVPKKVDDFGRPSLLPQHVSSSPALPLKSHSVNYA 114

Query: 121 CVVDGVQNHAVHSSPLDSEQFYRAGIAAVNFLSDFVNNKFPSSDG----MGILSHSKNYV 176
             V   +     SS    +Q ++AGI AVNFLSD  N K PS DG     G+    K+ +
Sbjct: 115 STVVREEVEGKASSEPIGDQIFKAGIVAVNFLSDLSNCKIPSYDGGSDAFGL---PKSCM 171

Query: 177 VDAARALPNIRPASVKQIRKEDFTSVX--XXXXXXXXXXXXXAASSYHGAKGKVDKPNLG 234
           VD  R + +++ ++VK IR+E F  +                 +S++ GAK + ++    
Sbjct: 172 VDPTRPISSVKSSNVKAIRREHFAKIYPRSAAKESSVGTTRNPSSNFRGAK-EAERTGFV 230

Query: 235 KSFKHVASS 243
           K F+ V++S
Sbjct: 231 KGFRQVSNS 239


>AT1G18900.3 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:6529778-6532541 FORWARD
           LENGTH=886
          Length = 886

 Score =  117 bits (292), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/249 (35%), Positives = 134/249 (53%), Gaps = 19/249 (7%)

Query: 4   MLRGKQISSLSSTARSFFLSGSRCNGAEGNSCTCPEDETCVSRRQR-RKNEDLLVQKPSS 62
           M+R K IS+LSSTARSFFL+GSR +  +GNSC   +DE CVS+RQ+ RK      ++PSS
Sbjct: 1   MIRAKHISNLSSTARSFFLNGSRTSVTDGNSCVYSDDENCVSKRQQLRKEAGQTEKRPSS 60

Query: 63  LVSKTTSQVKGTLVSGNSASSANAPCI-RKAESVDQSSALVQ-VRSTLGPSSKSDTVTYA 120
           ++ K +  V G ++ G        P + +K +   + S L Q V S+     KS +V YA
Sbjct: 61  ILPKPS--VVGCILPG----EVTKPVVPKKVDDFGRPSLLPQHVSSSPALPLKSHSVNYA 114

Query: 121 CVVDGVQNHAVHSSPLDSEQFYRAGIAAVNFLSDFVNNKFPSSDG----MGILSHSKNYV 176
             V   +     SS    +Q ++AGI AVNFLSD  N K PS DG     G+    K+ +
Sbjct: 115 STVVREEVEGKASSEPIGDQIFKAGIVAVNFLSDLSNCKIPSYDGGSDAFGL---PKSCM 171

Query: 177 VDAARALPNIRPASVKQIRKEDFTSVX--XXXXXXXXXXXXXAASSYHGAKGKVDKPNLG 234
           VD  R + +++ ++VK IR+E F  +                 +S++ GAK + ++    
Sbjct: 172 VDPTRPISSVKSSNVKAIRREHFAKIYPRSAAKESSVGTTRNPSSNFRGAK-EAERTGFV 230

Query: 235 KSFKHVASS 243
           K F+ V++S
Sbjct: 231 KGFRQVSNS 239


>AT1G74750.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:28086800-28089367 FORWARD
           LENGTH=855
          Length = 855

 Score =  112 bits (279), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/199 (36%), Positives = 111/199 (55%), Gaps = 10/199 (5%)

Query: 4   MLRGKQISSLSSTARSFFLSGSRCNGAEGNSCTCPEDETCVSRRQRRKNEDLLVQKPSSL 63
           M+R K IS+LSS+ARSFFLSGSR + A+GNSCTC EDE+ VS+RQ+ + E   V +    
Sbjct: 1   MIRAKHISNLSSSARSFFLSGSRPSAADGNSCTCAEDESGVSKRQQIRTE---VVQTGKR 57

Query: 64  VSKTTSQVKGTLVSGNSASSANAPCIRKAESVDQSSALVQVRSTLGPSSKSDTVTYACVV 123
            S   + + G+++   +      P  +  E   + S L Q  S+     K+D+V +A  +
Sbjct: 58  ASNLAAGLAGSILPVEAGKPLVVP--KTVEHFTRPSLLPQHVSSPALPGKADSVNHASAI 115

Query: 124 DGVQNHAVHSSPLDSEQFYRAGIAAVNFLSDFVNNKFPSSDGMGILSHSKNYVVDAARAL 183
             ++       P+  +Q ++AGI  VN LSD  N K P SDG  ++   K+ +VD  R +
Sbjct: 116 --IKEDV--GVPI-GDQIFKAGIGNVNLLSDIANYKIPLSDGTEVVGLPKSCMVDPTRPI 170

Query: 184 PNIRPASVKQIRKEDFTSV 202
             ++ ++VK IR+E    V
Sbjct: 171 SGVKSSNVKVIRREHLAKV 189