Miyakogusa Predicted Gene

Lj1g3v0448970.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0448970.1 tr|G7LCX9|G7LCX9_MEDTR F-box/LRR-repeat protein
OS=Medicago truncatula GN=MTR_8g076010 PE=4 SV=1,48.06,3e-19,seg,NULL;
no description,NULL,CUFF.25869.1
         (178 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G80630.1 | Symbols:  | RNI-like superfamily protein | chr1:30...    61   4e-10

>AT1G80630.1 | Symbols:  | RNI-like superfamily protein |
           chr1:30308879-30310615 REVERSE LENGTH=578
          Length = 578

 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 6/118 (5%)

Query: 19  LPEECWEYIFTLLNQPQQQYLEPVSLVSKQFLSITNRLQFSLAIXXXXXXXXXXXXXXXX 78
           LPEECWE I   +++   ++LE VSLVS  FLSITNR++ +  +                
Sbjct: 3   LPEECWELICKAIDEDDYRFLESVSLVSTLFLSITNRVRSTFVVTDRAVPLLNRHLLRFR 62

Query: 79  NLTSLDLTRFHGELDALLLQISRHPLRLLTSLKLSHNQTTFPAHVVRAESSNLRQFLC 136
           NL  +  + F  +L+++LLQ+SR  L    S+ +S  +  FP      E  N+++  C
Sbjct: 63  NLKRIRFSDFTQDLNSILLQVSRSGLD-FESVDVSQTR-YFPDF----EMKNVKELKC 114