Miyakogusa Predicted Gene

Lj1g3v0427860.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0427860.1 tr|Q75G50|Q75G50_ORYSJ Os05g0220900 protein
OS=Oryza sativa subsp. japonica GN=B1003C08.7 PE=4
SV=1,28.24,5e-17,coiled-coil,NULL; seg,NULL,CUFF.25857.1
         (361 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G47850.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   150   2e-36

>AT3G47850.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12
           growth stages; Has 57 Blast hits to 57 proteins in 32
           species: Archae - 0; Bacteria - 5; Metazoa - 12; Fungi -
           4; Plants - 29; Viruses - 0; Other Eukaryotes - 7
           (source: NCBI BLink). | chr3:17654256-17656000 REVERSE
           LENGTH=352
          Length = 352

 Score =  150 bits (378), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 129/377 (34%), Positives = 169/377 (44%), Gaps = 73/377 (19%)

Query: 1   MVAISLYRGNLHRVPDVPRRWLMPNPKISIKNFKSLLDRRSKALSRXXXXXXXXXXXXXX 60
           MVAIS+YRGNLH+VPDVPRRW+MP+  +S K+FKSLL RR KALSR              
Sbjct: 31  MVAISMYRGNLHKVPDVPRRWIMPDRNLSFKDFKSLLHRRKKALSRLPLNPNLNLSVKTE 90

Query: 61  XXXXXXHGEGPSNAAVKEQQQQPHRKESELVAGNSDQKPLINSKNNGFEKASNGAATSIE 120
                 +   PS A     +Q+    + E + GN  +    N +  GFE A +       
Sbjct: 91  LVTDQENPILPSEANGSSGKQKLFEVKREEICGNRVKGDENNDR--GFEGARSDGGDRPG 148

Query: 121 KQAELPVTDN---------------GGMLTDNKQKRKREVEDKLQVLNGKKHNLVLVLKQ 165
           +  E   TDN                  +    + +++EVE++LQVLN KKHNLV VLKQ
Sbjct: 149 RVTESKETDNVPHKYAAKEEETNEAAEKVPSETELKRKEVEERLQVLNAKKHNLVQVLKQ 208

Query: 166 VQNNGLVFHVSVCVCLLCFMNDELTGLIDRQILNAEEELKRRNSVLQPGVAMRGMSILP- 224
                                          ILNAEEELKRR+ + Q G  +     LP 
Sbjct: 209 -------------------------------ILNAEEELKRRSYMQQQGTTVATRPSLPL 237

Query: 225 QPDGTNDNGSMTRHMTTRSEGNIXXXXXXXXXXXXSANHNVQYSRHVLRTXXXXXXXXXX 284
             D +ND+G    ++ T  EG              +ANHN   +R +LR           
Sbjct: 238 HVDVSNDSGG---NVGTHMEGG---------ETDDAANHNNAQTRTLLRLCGASSSSESP 285

Query: 285 LRRTPNV-QPNVVSHPARASLGATVSPSRFALSGHQGNPMNPPSVSVSGTSYIXXXXXXX 343
           LRR   + Q N+V H +R S    V PS+         P    +VS SGT+YI       
Sbjct: 286 LRRAAALSQHNMVPHTSRWS--PLVGPSQ---------PGPAVTVSASGTNYIASSPSPA 334

Query: 344 XXGGTSVFRDARQPSPW 360
             GGTSVFR++R  SPW
Sbjct: 335 GFGGTSVFRESRLQSPW 351