Miyakogusa Predicted Gene
- Lj1g3v0426840.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v0426840.1 Non Chatacterized Hit- tr|I3SI98|I3SI98_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,92.09,0,HLH,
helix-loop-helix DNA-binding domain,Helix-loop-helix domain;
coiled-coil,NULL; seg,NULL; helix ,CUFF.25856.1
(253 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G62610.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 217 5e-57
AT1G59640.1 | Symbols: ZCW32, BPE, BPEub | BIG PETAL P | chr1:21... 206 2e-53
AT1G59640.2 | Symbols: ZCW32, BPE, BPEp | BIG PETAL P | chr1:219... 172 2e-43
AT3G07340.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 154 4e-38
AT1G68920.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 153 1e-37
AT1G68920.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 153 1e-37
AT1G68920.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 153 1e-37
AT5G48560.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 152 2e-37
AT3G23690.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 150 8e-37
AT4G34530.1 | Symbols: CIB1 | cryptochrome-interacting basic-hel... 146 1e-35
AT1G10120.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 144 8e-35
AT5G50915.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 140 9e-34
AT5G50915.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 140 9e-34
AT1G26260.3 | Symbols: CIB5 | cryptochrome-interacting basic-hel... 140 1e-33
AT1G26260.2 | Symbols: CIB5 | cryptochrome-interacting basic-hel... 140 1e-33
AT1G26260.1 | Symbols: CIB5 | cryptochrome-interacting basic-hel... 140 1e-33
AT2G18300.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 138 3e-33
AT2G18300.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 138 3e-33
AT2G18300.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 138 4e-33
AT4G36540.1 | Symbols: BEE2 | BR enhanced expression 2 | chr4:17... 136 1e-32
AT4G36540.2 | Symbols: BEE2 | BR enhanced expression 2 | chr4:17... 136 1e-32
AT3G57800.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 134 6e-32
AT2G42300.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 132 2e-31
AT1G73830.2 | Symbols: BEE3 | BR enhanced expression 3 | chr1:27... 125 2e-29
AT1G73830.1 | Symbols: BEE3 | BR enhanced expression 3 | chr1:27... 125 2e-29
AT1G18400.1 | Symbols: BEE1 | BR enhanced expression 1 | chr1:63... 124 6e-29
AT1G25330.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 124 6e-29
AT3G57800.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 111 4e-25
AT2G24260.1 | Symbols: LRL1 | LJRHL1-like 1 | chr2:10319646-1032... 94 8e-20
AT5G58010.1 | Symbols: LRL3 | LJRHL1-like 3 | chr5:23483670-2348... 93 2e-19
AT4G30980.1 | Symbols: LRL2 | LJRHL1-like 2 | chr4:15079489-1508... 91 5e-19
AT2G42300.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 83 2e-16
AT2G20180.1 | Symbols: PIL5, PIF1 | phytochrome interacting fact... 73 2e-13
AT2G20180.3 | Symbols: PIL5 | phytochrome interacting factor 3-l... 72 3e-13
AT2G20180.2 | Symbols: PIL5 | phytochrome interacting factor 3-l... 72 3e-13
AT1G09530.2 | Symbols: PIF3, POC1, PAP3 | phytochrome interactin... 72 5e-13
AT1G09530.1 | Symbols: PIF3, POC1, PAP3 | phytochrome interactin... 72 5e-13
AT1G51140.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 70 1e-12
AT4G02590.2 | Symbols: UNE12 | basic helix-loop-helix (bHLH) DNA... 69 4e-12
AT4G02590.1 | Symbols: UNE12 | basic helix-loop-helix (bHLH) DNA... 69 4e-12
AT2G46970.1 | Symbols: PIL1 | phytochrome interacting factor 3-l... 68 5e-12
AT4G02590.3 | Symbols: UNE12 | basic helix-loop-helix (bHLH) DNA... 68 5e-12
AT2G42280.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 68 6e-12
AT1G03040.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 67 1e-11
AT1G03040.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 67 1e-11
AT1G05805.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 67 1e-11
AT2G43140.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 67 1e-11
AT4G09180.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 66 2e-11
AT1G35460.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 66 3e-11
AT4G28800.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 66 3e-11
AT4G28815.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 65 4e-11
AT2G43140.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 65 5e-11
AT4G33880.1 | Symbols: RSL2 | ROOT HAIR DEFECTIVE 6-LIKE 2 | chr... 64 1e-10
AT4G28790.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 64 1e-10
AT4G00050.1 | Symbols: UNE10 | basic helix-loop-helix (bHLH) DNA... 62 3e-10
AT2G14760.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 62 3e-10
AT1G27740.1 | Symbols: RSL4 | root hair defective 6-like 4 | chr... 62 5e-10
AT3G21330.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 60 1e-09
AT4G36930.1 | Symbols: SPT | basic helix-loop-helix (bHLH) DNA-b... 60 2e-09
AT3G59060.4 | Symbols: PIL6, PIF5 | phytochrome interacting fact... 59 3e-09
AT3G59060.3 | Symbols: PIL6, PIF5 | phytochrome interacting fact... 59 3e-09
AT3G59060.2 | Symbols: PIL6, PIF5 | phytochrome interacting fact... 59 3e-09
AT4G28790.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 59 3e-09
AT3G59060.1 | Symbols: PIL6, PIF5 | phytochrome interacting fact... 59 3e-09
AT2G43010.2 | Symbols: PIF4, SRL2, AtPIF4 | phytochrome interact... 59 4e-09
AT2G43010.1 | Symbols: PIF4, SRL2, AtPIF4 | phytochrome interact... 59 4e-09
AT5G43175.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 58 8e-09
AT5G67110.1 | Symbols: ALC | basic helix-loop-helix (bHLH) DNA-b... 57 9e-09
AT5G01310.1 | Symbols: APTX | APRATAXIN-like | chr5:125304-12896... 54 1e-07
AT1G66470.1 | Symbols: RHD6 | ROOT HAIR DEFECTIVE6 | chr1:247953... 53 2e-07
AT2G14760.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 53 2e-07
AT5G37800.1 | Symbols: RSL1, ATRSL1 | RHD SIX-LIKE 1 | chr5:1503... 52 3e-07
AT5G61270.1 | Symbols: PIF7 | phytochrome-interacting factor7 | ... 52 5e-07
AT5G61270.2 | Symbols: PIF7 | phytochrome-interacting factor7 | ... 52 5e-07
AT5G41315.1 | Symbols: GL3, MYC6.2 | basic helix-loop-helix (bHL... 51 8e-07
AT1G69010.1 | Symbols: BIM2 | BES1-interacting Myc-like protein ... 51 9e-07
AT1G63650.3 | Symbols: EGL3 | basic helix-loop-helix (bHLH) DNA-... 50 1e-06
AT1G63650.2 | Symbols: EGL3, EGL1, ATMYC-2 | basic helix-loop-he... 50 1e-06
AT1G63650.1 | Symbols: EGL3, EGL1, ATMYC-2 | basic helix-loop-he... 50 1e-06
AT1G02340.1 | Symbols: HFR1, RSF1, FBI1, REP1 | basic helix-loop... 49 3e-06
>AT5G62610.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:25133117-25134600 REVERSE
LENGTH=281
Length = 281
Score = 217 bits (553), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 146/296 (49%), Positives = 169/296 (57%), Gaps = 58/296 (19%)
Query: 1 MDPPLINDSTFSSA----FALAEIWPRP------------------------GGGAD--- 29
MDPPL+NDS+FS+A + L+EIWP P G D
Sbjct: 1 MDPPLVNDSSFSAANPSSYTLSEIWPFPVNDAVRSGLRLAVNSGRVFTRSEHSGNKDVSA 60
Query: 30 -EHSTVTQLTAAARNHGSRIKMKNNNDSTTSEDDCSK-----------NDSGNKRIRLXX 77
E STVT LTA GSR K ++ N SEDD SK +SG+K+ +L
Sbjct: 61 AEESTVTDLTAG---WGSR-KTRDLN----SEDDSSKMVSSSSSGNELKESGDKKRKLCG 112
Query: 78 XXXXXXXXXXXXLKAAEASSVAGSNNSDEQSTKPSESEPPKQDYIHVRARRGQATDSHSI 137
E SS G + + EQ KP EPPK DYIHVRARRGQATD HS+
Sbjct: 113 SESGNGDGSMR--PEGETSSGGGGSKATEQKNKP---EPPK-DYIHVRARRGQATDRHSL 166
Query: 138 AERARREKISERMKILQDLVPGCNKMIGKALVLDEIINYIQSLQHQVEFLSMKLEAVNSR 197
AERARREKISE+M LQD++PGCNK+IGKALVLDEIINYIQSLQ QVEFLSMKLE VNS
Sbjct: 167 AERARREKISEKMTALQDIIPGCNKIIGKALVLDEIINYIQSLQRQVEFLSMKLEVVNSG 226
Query: 198 ANLNPTNEGFPSKDVVTQPFDIAGVIYESQAARGYAQGSHPGWLHMQIGGGFEGAT 253
A+ PT FPS D+ T P D+ IYE Q A + S P WLHMQ+ G F T
Sbjct: 227 ASTGPTIGVFPSGDLGTLPIDVHRTIYEQQEA-NETRVSQPEWLHMQVDGNFNRTT 281
>AT1G59640.1 | Symbols: ZCW32, BPE, BPEub | BIG PETAL P |
chr1:21909464-21911030 REVERSE LENGTH=264
Length = 264
Score = 206 bits (523), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 106/159 (66%), Positives = 122/159 (76%), Gaps = 9/159 (5%)
Query: 93 AEASSVAGSNNSDEQSTKPSESEPPKQDYIHVRARRGQATDSHSIAERARREKISERMKI 152
AEA S+ +Q +P+ +DYIHVRARRGQATDSHS+AERARREKISERMKI
Sbjct: 111 AEAESLGTETEQKKQQMEPT------KDYIHVRARRGQATDSHSLAERARREKISERMKI 164
Query: 153 LQDLVPGCNKMIGKALVLDEIINYIQSLQHQVEFLSMKLEAVNSRANLNPTNEGFPSKDV 212
LQDLVPGCNK+IGKALVLDEIINYIQSLQ QVEFLSMKLEAVNSR +NP E FP K+
Sbjct: 165 LQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSR--MNPGIEVFPPKEF 222
Query: 213 VTQPFDIAGVIYESQAARGYAQGSHPGWLHMQIG-GGFE 250
Q F+ + + SQ+ R Y++G+ P WLHMQIG GGFE
Sbjct: 223 GQQAFENPEIQFGSQSTREYSRGASPEWLHMQIGSGGFE 261
>AT1G59640.2 | Symbols: ZCW32, BPE, BPEp | BIG PETAL P |
chr1:21909635-21911030 REVERSE LENGTH=343
Length = 343
Score = 172 bits (436), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 88/121 (72%), Positives = 98/121 (80%), Gaps = 8/121 (6%)
Query: 93 AEASSVAGSNNSDEQSTKPSESEPPKQDYIHVRARRGQATDSHSIAERARREKISERMKI 152
AEA S+ +Q +P+ +DYIHVRARRGQATDSHS+AERARREKISERMKI
Sbjct: 111 AEAESLGTETEQKKQQMEPT------KDYIHVRARRGQATDSHSLAERARREKISERMKI 164
Query: 153 LQDLVPGCNKMIGKALVLDEIINYIQSLQHQVEFLSMKLEAVNSRANLNPTNEGFPSKDV 212
LQDLVPGCNK+IGKALVLDEIINYIQSLQ QVEFLSMKLEAVNSR +NP E FP K+V
Sbjct: 165 LQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSR--MNPGIEVFPPKEV 222
Query: 213 V 213
+
Sbjct: 223 M 223
>AT3G07340.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr3:2341188-2343288 REVERSE
LENGTH=456
Length = 456
Score = 154 bits (390), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 72/97 (74%), Positives = 83/97 (85%), Gaps = 2/97 (2%)
Query: 117 PKQDYIHVRARRGQATDSHSIAERARREKISERMKILQDLVPGCNKMIGKALVLDEIINY 176
P +DYIHVRARRGQATDSHS+AER RREKISERMK+LQDLVPGCNK+ GKAL+LDEIINY
Sbjct: 251 PYKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINY 310
Query: 177 IQSLQHQVEFLSMKLEAVNSRANLNPTNEGFPSKDVV 213
+QSLQ QVEFLSMKL +VN+R + N + SKD+
Sbjct: 311 VQSLQRQVEFLSMKLSSVNTRLDFN--MDALLSKDIF 345
>AT1G68920.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:25915620-25917675 FORWARD
LENGTH=486
Length = 486
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 77/111 (69%), Positives = 89/111 (80%), Gaps = 3/111 (2%)
Query: 103 NSDEQSTKPSESEPPKQDYIHVRARRGQATDSHSIAERARREKISERMKILQDLVPGCNK 162
NS +Q K S S+PPK YIHVRARRGQAT+SHS+AER RREKISERMK LQDLVPGCNK
Sbjct: 283 NSGKQQGKQS-SDPPKDGYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNK 341
Query: 163 MIGKALVLDEIINYIQSLQHQVEFLSMKLEAVNSRANLNPTNEGFPSKDVV 213
+ GKA++LDEIINY+QSLQ QVEFLSMKL VN + + N EG +KD +
Sbjct: 342 VTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPQMDFNL--EGLLAKDAL 390
>AT1G68920.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:25915620-25917675 FORWARD
LENGTH=486
Length = 486
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 77/111 (69%), Positives = 89/111 (80%), Gaps = 3/111 (2%)
Query: 103 NSDEQSTKPSESEPPKQDYIHVRARRGQATDSHSIAERARREKISERMKILQDLVPGCNK 162
NS +Q K S S+PPK YIHVRARRGQAT+SHS+AER RREKISERMK LQDLVPGCNK
Sbjct: 283 NSGKQQGKQS-SDPPKDGYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNK 341
Query: 163 MIGKALVLDEIINYIQSLQHQVEFLSMKLEAVNSRANLNPTNEGFPSKDVV 213
+ GKA++LDEIINY+QSLQ QVEFLSMKL VN + + N EG +KD +
Sbjct: 342 VTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPQMDFNL--EGLLAKDAL 390
>AT1G68920.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:25915620-25917675 FORWARD
LENGTH=485
Length = 485
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 77/111 (69%), Positives = 89/111 (80%), Gaps = 3/111 (2%)
Query: 103 NSDEQSTKPSESEPPKQDYIHVRARRGQATDSHSIAERARREKISERMKILQDLVPGCNK 162
NS +Q K S S+PPK YIHVRARRGQAT+SHS+AER RREKISERMK LQDLVPGCNK
Sbjct: 282 NSGKQQGKQS-SDPPKDGYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNK 340
Query: 163 MIGKALVLDEIINYIQSLQHQVEFLSMKLEAVNSRANLNPTNEGFPSKDVV 213
+ GKA++LDEIINY+QSLQ QVEFLSMKL VN + + N EG +KD +
Sbjct: 341 VTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPQMDFNL--EGLLAKDAL 389
>AT5G48560.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:19684160-19686871 FORWARD
LENGTH=498
Length = 498
Score = 152 bits (384), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/106 (73%), Positives = 88/106 (83%), Gaps = 6/106 (5%)
Query: 109 TKPSESEPPKQDYIHVRARRGQATDSHSIAERARREKISERMKILQDLVPGCNKMIGKAL 168
TKP E PPK DYIHVRARRGQATDSHS+AER RREKI ERMK+LQDLVPGCNK+ GKAL
Sbjct: 289 TKPPE--PPK-DYIHVRARRGQATDSHSLAERVRREKIGERMKLLQDLVPGCNKVTGKAL 345
Query: 169 VLDEIINYIQSLQHQVEFLSMKLEAVN-SRANLNPTNEGFPSKDVV 213
+LDEIINY+QSLQ QVEFLSMKL +VN +R + N + SKDV+
Sbjct: 346 MLDEIINYVQSLQRQVEFLSMKLSSVNDTRLDFNV--DALVSKDVM 389
>AT3G23690.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr3:8528933-8530655 REVERSE
LENGTH=371
Length = 371
Score = 150 bits (379), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 72/109 (66%), Positives = 85/109 (77%), Gaps = 2/109 (1%)
Query: 95 ASSVAGSNNSDEQSTKPSESEPPK--QDYIHVRARRGQATDSHSIAERARREKISERMKI 152
SS G D + +++PP+ +DYIHVRARRGQATDSHS+AERARREKISERM +
Sbjct: 160 GSSKNGVEKCDSKGDNKDDAKPPEAPKDYIHVRARRGQATDSHSLAERARREKISERMTL 219
Query: 153 LQDLVPGCNKMIGKALVLDEIINYIQSLQHQVEFLSMKLEAVNSRANLN 201
LQDLVPGCN++ GKA++LDEIINY+QSLQ QVEFLSMKL VN R N
Sbjct: 220 LQDLVPGCNRITGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMEFN 268
>AT4G34530.1 | Symbols: CIB1 | cryptochrome-interacting
basic-helix-loop-helix 1 | chr4:16498466-16499946
FORWARD LENGTH=335
Length = 335
Score = 146 bits (369), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 80/149 (53%), Positives = 100/149 (67%), Gaps = 6/149 (4%)
Query: 102 NNSDEQSTKPSESEPPKQDYIHVRARRGQATDSHSIAERARREKISERMKILQDLVPGCN 161
NN S+K ++ E K DYIHVRARRGQATDSHSIAER RREKISERMK LQDLVPGC+
Sbjct: 151 NNFSNDSSKVTK-ELEKTDYIHVRARRGQATDSHSIAERVRREKISERMKFLQDLVPGCD 209
Query: 162 KMIGKALVLDEIINYIQSLQHQVEFLSMKLEAVNSRANLNPTNEGFPSKDVVTQPFDIAG 221
K+ GKA +LDEIINY+QSLQ Q+EFLSMKL VN R + + + +K+V + P +
Sbjct: 210 KITGKAGMLDEIINYVQSLQRQIEFLSMKLAIVNPRPDFDM--DDIFAKEVASTPMTV-- 265
Query: 222 VIYESQAARGYA-QGSHPGWLHMQIGGGF 249
V GY+ + H G+ + G+
Sbjct: 266 VPSPEMVLSGYSHEMVHSGYSSEMVNSGY 294
>AT1G10120.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:3304228-3305984 REVERSE
LENGTH=366
Length = 366
Score = 144 bits (362), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 64/87 (73%), Positives = 78/87 (89%)
Query: 115 EPPKQDYIHVRARRGQATDSHSIAERARREKISERMKILQDLVPGCNKMIGKALVLDEII 174
E PK++YIH+RARRGQAT+SHS+AER RREKISERM++LQ+LVPGCNK+ GKA++LDEII
Sbjct: 197 EAPKENYIHMRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEII 256
Query: 175 NYIQSLQHQVEFLSMKLEAVNSRANLN 201
NY+QSLQ QVEFLSMKL VN N++
Sbjct: 257 NYVQSLQQQVEFLSMKLATVNPEINID 283
>AT5G50915.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:20710764-20712252 REVERSE
LENGTH=286
Length = 286
Score = 140 bits (353), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 69/102 (67%), Positives = 82/102 (80%), Gaps = 9/102 (8%)
Query: 101 SNNSDE--------QSTKPSESEPPKQDYIHVRARRGQATDSHSIAERARREKISERMKI 152
SNNS E + + S+ EPP DYIHVRARRGQATDSHS+AER RREKISERM+
Sbjct: 106 SNNSKEGVEGRKSKKQKRGSKEEPPT-DYIHVRARRGQATDSHSLAERVRREKISERMRT 164
Query: 153 LQDLVPGCNKMIGKALVLDEIINYIQSLQHQVEFLSMKLEAV 194
LQ+LVPGC+K+ GKAL+LDEIINY+Q+LQ QVEFLSMKL ++
Sbjct: 165 LQNLVPGCDKVTGKALMLDEIINYVQTLQTQVEFLSMKLTSI 206
>AT5G50915.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:20710764-20712252 REVERSE
LENGTH=286
Length = 286
Score = 140 bits (353), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 69/102 (67%), Positives = 82/102 (80%), Gaps = 9/102 (8%)
Query: 101 SNNSDE--------QSTKPSESEPPKQDYIHVRARRGQATDSHSIAERARREKISERMKI 152
SNNS E + + S+ EPP DYIHVRARRGQATDSHS+AER RREKISERM+
Sbjct: 106 SNNSKEGVEGRKSKKQKRGSKEEPPT-DYIHVRARRGQATDSHSLAERVRREKISERMRT 164
Query: 153 LQDLVPGCNKMIGKALVLDEIINYIQSLQHQVEFLSMKLEAV 194
LQ+LVPGC+K+ GKAL+LDEIINY+Q+LQ QVEFLSMKL ++
Sbjct: 165 LQNLVPGCDKVTGKALMLDEIINYVQTLQTQVEFLSMKLTSI 206
>AT1G26260.3 | Symbols: CIB5 | cryptochrome-interacting
basic-helix-loop-helix 5 | chr1:9087214-9089035 FORWARD
LENGTH=339
Length = 339
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 71/106 (66%), Positives = 85/106 (80%), Gaps = 5/106 (4%)
Query: 96 SSVAGSNNSDEQSTKPSESEPPKQDYIHVRARRGQATDSHSIAERARREKISERMKILQD 155
+S A NS++Q PS+S K YIH+RARRGQAT+SHS+AER RREKISERMK LQD
Sbjct: 149 TSNANKTNSEKQ---PSDSL--KDGYIHMRARRGQATNSHSLAERVRREKISERMKFLQD 203
Query: 156 LVPGCNKMIGKALVLDEIINYIQSLQHQVEFLSMKLEAVNSRANLN 201
LVPGC+K+ GKA++LDEIINY+QSLQ Q+EFLSMKL AVN + N
Sbjct: 204 LVPGCDKVTGKAVMLDEIINYVQSLQCQIEFLSMKLSAVNPVLDFN 249
>AT1G26260.2 | Symbols: CIB5 | cryptochrome-interacting
basic-helix-loop-helix 5 | chr1:9087214-9089035 FORWARD
LENGTH=390
Length = 390
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 71/106 (66%), Positives = 85/106 (80%), Gaps = 5/106 (4%)
Query: 96 SSVAGSNNSDEQSTKPSESEPPKQDYIHVRARRGQATDSHSIAERARREKISERMKILQD 155
+S A NS++Q PS+S K YIH+RARRGQAT+SHS+AER RREKISERMK LQD
Sbjct: 200 TSNANKTNSEKQ---PSDSL--KDGYIHMRARRGQATNSHSLAERVRREKISERMKFLQD 254
Query: 156 LVPGCNKMIGKALVLDEIINYIQSLQHQVEFLSMKLEAVNSRANLN 201
LVPGC+K+ GKA++LDEIINY+QSLQ Q+EFLSMKL AVN + N
Sbjct: 255 LVPGCDKVTGKAVMLDEIINYVQSLQCQIEFLSMKLSAVNPVLDFN 300
>AT1G26260.1 | Symbols: CIB5 | cryptochrome-interacting
basic-helix-loop-helix 5 | chr1:9087214-9089035 FORWARD
LENGTH=390
Length = 390
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 71/106 (66%), Positives = 85/106 (80%), Gaps = 5/106 (4%)
Query: 96 SSVAGSNNSDEQSTKPSESEPPKQDYIHVRARRGQATDSHSIAERARREKISERMKILQD 155
+S A NS++Q PS+S K YIH+RARRGQAT+SHS+AER RREKISERMK LQD
Sbjct: 200 TSNANKTNSEKQ---PSDSL--KDGYIHMRARRGQATNSHSLAERVRREKISERMKFLQD 254
Query: 156 LVPGCNKMIGKALVLDEIINYIQSLQHQVEFLSMKLEAVNSRANLN 201
LVPGC+K+ GKA++LDEIINY+QSLQ Q+EFLSMKL AVN + N
Sbjct: 255 LVPGCDKVTGKAVMLDEIINYVQSLQCQIEFLSMKLSAVNPVLDFN 300
>AT2G18300.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:7953022-7954446 REVERSE
LENGTH=335
Length = 335
Score = 138 bits (348), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 69/102 (67%), Positives = 80/102 (78%), Gaps = 2/102 (1%)
Query: 99 AGSNNSDEQSTKPSESEPPKQDYIHVRARRGQATDSHSIAERARREKISERMKILQDLVP 158
A S+ S E S SE++ K DYIHVRARRGQATD HS+AERARREKIS++MK LQD+VP
Sbjct: 162 ASSDTSKETSKGASENQ--KLDYIHVRARRGQATDRHSLAERARREKISKKMKYLQDIVP 219
Query: 159 GCNKMIGKALVLDEIINYIQSLQHQVEFLSMKLEAVNSRANL 200
GCNK+ GKA +LDEIINY+Q LQ QVEFLSMKL +N L
Sbjct: 220 GCNKVTGKAGMLDEIINYVQCLQRQVEFLSMKLAVLNPELEL 261
>AT2G18300.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:7953022-7954446 REVERSE
LENGTH=337
Length = 337
Score = 138 bits (348), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 69/102 (67%), Positives = 80/102 (78%), Gaps = 2/102 (1%)
Query: 99 AGSNNSDEQSTKPSESEPPKQDYIHVRARRGQATDSHSIAERARREKISERMKILQDLVP 158
A S+ S E S SE++ K DYIHVRARRGQATD HS+AERARREKIS++MK LQD+VP
Sbjct: 162 ASSDTSKETSKGASENQ--KLDYIHVRARRGQATDRHSLAERARREKISKKMKYLQDIVP 219
Query: 159 GCNKMIGKALVLDEIINYIQSLQHQVEFLSMKLEAVNSRANL 200
GCNK+ GKA +LDEIINY+Q LQ QVEFLSMKL +N L
Sbjct: 220 GCNKVTGKAGMLDEIINYVQCLQRQVEFLSMKLAVLNPELEL 261
>AT2G18300.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:7952546-7954446 REVERSE
LENGTH=364
Length = 364
Score = 138 bits (347), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 69/102 (67%), Positives = 80/102 (78%), Gaps = 2/102 (1%)
Query: 99 AGSNNSDEQSTKPSESEPPKQDYIHVRARRGQATDSHSIAERARREKISERMKILQDLVP 158
A S+ S E S SE++ K DYIHVRARRGQATD HS+AERARREKIS++MK LQD+VP
Sbjct: 162 ASSDTSKETSKGASENQ--KLDYIHVRARRGQATDRHSLAERARREKISKKMKYLQDIVP 219
Query: 159 GCNKMIGKALVLDEIINYIQSLQHQVEFLSMKLEAVNSRANL 200
GCNK+ GKA +LDEIINY+Q LQ QVEFLSMKL +N L
Sbjct: 220 GCNKVTGKAGMLDEIINYVQCLQRQVEFLSMKLAVLNPELEL 261
>AT4G36540.1 | Symbols: BEE2 | BR enhanced expression 2 |
chr4:17243699-17244965 FORWARD LENGTH=304
Length = 304
Score = 136 bits (343), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/99 (67%), Positives = 79/99 (79%), Gaps = 3/99 (3%)
Query: 97 SVAGSNNSDEQSTKPSESEPPKQDYIHVRARRGQATDSHSIAERARREKISERMKILQDL 156
S+ G +N S + SE K DYIHVRARRG+ATD HS+AERARREKIS++MK LQD+
Sbjct: 117 SMKGKSN---MSNTETSSEIQKPDYIHVRARRGEATDRHSLAERARREKISKKMKCLQDI 173
Query: 157 VPGCNKMIGKALVLDEIINYIQSLQHQVEFLSMKLEAVN 195
VPGCNK+ GKA +LDEIINY+QSLQ QVEFLSMKL +N
Sbjct: 174 VPGCNKVTGKAGMLDEIINYVQSLQQQVEFLSMKLSVIN 212
>AT4G36540.2 | Symbols: BEE2 | BR enhanced expression 2 |
chr4:17243699-17244965 FORWARD LENGTH=302
Length = 302
Score = 136 bits (343), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/99 (67%), Positives = 79/99 (79%), Gaps = 3/99 (3%)
Query: 97 SVAGSNNSDEQSTKPSESEPPKQDYIHVRARRGQATDSHSIAERARREKISERMKILQDL 156
S+ G +N S + SE K DYIHVRARRG+ATD HS+AERARREKIS++MK LQD+
Sbjct: 117 SMKGKSN---MSNTETSSEIQKPDYIHVRARRGEATDRHSLAERARREKISKKMKCLQDI 173
Query: 157 VPGCNKMIGKALVLDEIINYIQSLQHQVEFLSMKLEAVN 195
VPGCNK+ GKA +LDEIINY+QSLQ QVEFLSMKL +N
Sbjct: 174 VPGCNKVTGKAGMLDEIINYVQSLQQQVEFLSMKLSVIN 212
>AT3G57800.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr3:21408034-21411321 REVERSE
LENGTH=379
Length = 379
Score = 134 bits (337), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 62/84 (73%), Positives = 73/84 (86%)
Query: 118 KQDYIHVRARRGQATDSHSIAERARREKISERMKILQDLVPGCNKMIGKALVLDEIINYI 177
K Y+HVRARRGQATDSHS+AERARREKI+ RMK+LQ+LVPGC+K+ G ALVLDEIIN++
Sbjct: 198 KLPYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCDKIQGTALVLDEIINHV 257
Query: 178 QSLQHQVEFLSMKLEAVNSRANLN 201
QSLQ QVE LSM+L AVN R + N
Sbjct: 258 QSLQRQVEMLSMRLAAVNPRIDFN 281
>AT2G42300.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:17621542-17624635 FORWARD
LENGTH=327
Length = 327
Score = 132 bits (332), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 61/87 (70%), Positives = 74/87 (85%)
Query: 115 EPPKQDYIHVRARRGQATDSHSIAERARREKISERMKILQDLVPGCNKMIGKALVLDEII 174
E K Y+HVRARRGQATD+HS+AERARREKI+ RMK+LQ+LVPGC+K+ G ALVLDEII
Sbjct: 176 ESDKLPYVHVRARRGQATDNHSLAERARREKINARMKLLQELVPGCDKIQGTALVLDEII 235
Query: 175 NYIQSLQHQVEFLSMKLEAVNSRANLN 201
N++Q+LQ QVE LSM+L AVN R + N
Sbjct: 236 NHVQTLQRQVEMLSMRLAAVNPRIDFN 262
>AT1G73830.2 | Symbols: BEE3 | BR enhanced expression 3 |
chr1:27760027-27761346 FORWARD LENGTH=260
Length = 260
Score = 125 bits (315), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 58/79 (73%), Positives = 67/79 (84%)
Query: 123 HVRARRGQATDSHSIAERARREKISERMKILQDLVPGCNKMIGKALVLDEIINYIQSLQH 182
HVRARRGQATDSHSIAER RR KI+ER+K LQD+VPGC K +G A +LDEIINY+QSLQ+
Sbjct: 146 HVRARRGQATDSHSIAERVRRGKINERLKCLQDIVPGCYKTMGMATMLDEIINYVQSLQN 205
Query: 183 QVEFLSMKLEAVNSRANLN 201
QVEFLSMKL A +S + N
Sbjct: 206 QVEFLSMKLTAASSYYDFN 224
>AT1G73830.1 | Symbols: BEE3 | BR enhanced expression 3 |
chr1:27760027-27761346 FORWARD LENGTH=261
Length = 261
Score = 125 bits (314), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 58/79 (73%), Positives = 67/79 (84%)
Query: 123 HVRARRGQATDSHSIAERARREKISERMKILQDLVPGCNKMIGKALVLDEIINYIQSLQH 182
HVRARRGQATDSHSIAER RR KI+ER+K LQD+VPGC K +G A +LDEIINY+QSLQ+
Sbjct: 146 HVRARRGQATDSHSIAERVRRGKINERLKCLQDIVPGCYKTMGMATMLDEIINYVQSLQN 205
Query: 183 QVEFLSMKLEAVNSRANLN 201
QVEFLSMKL A +S + N
Sbjct: 206 QVEFLSMKLTAASSYYDFN 224
>AT1G18400.1 | Symbols: BEE1 | BR enhanced expression 1 |
chr1:6331464-6333576 FORWARD LENGTH=260
Length = 260
Score = 124 bits (311), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 57/88 (64%), Positives = 70/88 (79%)
Query: 122 IHVRARRGQATDSHSIAERARREKISERMKILQDLVPGCNKMIGKALVLDEIINYIQSLQ 181
+HVRARRGQATDSHS+AER RR KI+ER++ LQD+VPGC K +G A +LDEIINY+QSLQ
Sbjct: 143 VHVRARRGQATDSHSLAERVRRGKINERLRCLQDMVPGCYKAMGMATMLDEIINYVQSLQ 202
Query: 182 HQVEFLSMKLEAVNSRANLNPTNEGFPS 209
+QVEFLSMKL A +S + N + S
Sbjct: 203 NQVEFLSMKLTAASSFYDFNSETDAVDS 230
>AT1G25330.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:8880515-8882018 REVERSE
LENGTH=223
Length = 223
Score = 124 bits (311), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 58/89 (65%), Positives = 76/89 (85%), Gaps = 1/89 (1%)
Query: 113 ESEPPKQDYIHVRARRGQATDSHSIAERARREKISERMKILQDLVPGCNKMIGKALVLDE 172
E++ PK D +HVRA+RGQATDSHS+AER RREKI+ER+K LQDLVPGC K +G A++LD
Sbjct: 94 ETQKPK-DVVHVRAKRGQATDSHSLAERVRREKINERLKCLQDLVPGCYKAMGMAVMLDV 152
Query: 173 IINYIQSLQHQVEFLSMKLEAVNSRANLN 201
II+Y++SLQ+Q+EFLSMKL A ++ +LN
Sbjct: 153 IIDYVRSLQNQIEFLSMKLSAASACYDLN 181
>AT3G57800.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr3:21408034-21411321 REVERSE
LENGTH=426
Length = 426
Score = 111 bits (278), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 64/131 (48%), Positives = 74/131 (56%), Gaps = 47/131 (35%)
Query: 118 KQDYIHVRARRGQATDSHSIAERARREKISERMKILQDLVPGCNK--------------- 162
K Y+HVRARRGQATDSHS+AERARREKI+ RMK+LQ+LVPGC+K
Sbjct: 198 KLPYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCDKGTDFGGKIKIKVCFG 257
Query: 163 ----MI----------------------------GKALVLDEIINYIQSLQHQVEFLSMK 190
MI G ALVLDEIIN++QSLQ QVE LSM+
Sbjct: 258 VHLLMISGKKVAIFLWKVSCEDLIDCSFSPPRIQGTALVLDEIINHVQSLQRQVEMLSMR 317
Query: 191 LEAVNSRANLN 201
L AVN R + N
Sbjct: 318 LAAVNPRIDFN 328
>AT2G24260.1 | Symbols: LRL1 | LJRHL1-like 1 |
chr2:10319646-10322177 REVERSE LENGTH=350
Length = 350
Score = 94.0 bits (232), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 56/73 (76%), Gaps = 1/73 (1%)
Query: 117 PKQDYIHVRARRGQATDSHSIAERARREKISERMKILQDLVPGCNKMIGKALVLDEIINY 176
P Q +RARRGQATD HSIAER RRE+I+ERMK LQ+LVP NK KA +LDEII+Y
Sbjct: 131 PPQSRTKIRARRGQATDPHSIAERLRRERIAERMKALQELVPNGNK-TDKASMLDEIIDY 189
Query: 177 IQSLQHQVEFLSM 189
++ LQ QV+ LSM
Sbjct: 190 VKFLQLQVKVLSM 202
>AT5G58010.1 | Symbols: LRL3 | LJRHL1-like 3 |
chr5:23483670-23484889 REVERSE LENGTH=297
Length = 297
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/83 (60%), Positives = 59/83 (71%), Gaps = 1/83 (1%)
Query: 107 QSTKPSESEPPKQDYIHVRARRGQATDSHSIAERARREKISERMKILQDLVPGCNKMIGK 166
Q T + S P + VRARRGQATD HSIAER RRE+I+ERMK LQ+LVP NK K
Sbjct: 82 QGTVSTTSAPVVRQKPRVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNTNK-TDK 140
Query: 167 ALVLDEIINYIQSLQHQVEFLSM 189
A +LDEII Y++ LQ QV+ LSM
Sbjct: 141 ASMLDEIIEYVRFLQLQVKVLSM 163
>AT4G30980.1 | Symbols: LRL2 | LJRHL1-like 2 |
chr4:15079489-15081606 REVERSE LENGTH=310
Length = 310
Score = 91.3 bits (225), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/66 (69%), Positives = 54/66 (81%), Gaps = 1/66 (1%)
Query: 124 VRARRGQATDSHSIAERARREKISERMKILQDLVPGCNKMIGKALVLDEIINYIQSLQHQ 183
VRARRGQATD HSIAER RRE+I+ERMK LQ+LVP NK KA +LDEII+Y++ LQ Q
Sbjct: 130 VRARRGQATDPHSIAERLRRERIAERMKSLQELVPNGNK-TDKASMLDEIIDYVKFLQLQ 188
Query: 184 VEFLSM 189
V+ LSM
Sbjct: 189 VKVLSM 194
>AT2G42300.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:17621542-17623469 FORWARD
LENGTH=233
Length = 233
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 36/49 (73%), Positives = 44/49 (89%)
Query: 115 EPPKQDYIHVRARRGQATDSHSIAERARREKISERMKILQDLVPGCNKM 163
E K Y+HVRARRGQATD+HS+AERARREKI+ RMK+LQ+LVPGC+K+
Sbjct: 176 ESDKLPYVHVRARRGQATDNHSLAERARREKINARMKLLQELVPGCDKV 224
>AT2G20180.1 | Symbols: PIL5, PIF1 | phytochrome interacting factor
3-like 5 | chr2:8704525-8706237 REVERSE LENGTH=407
Length = 407
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 56/79 (70%), Gaps = 2/79 (2%)
Query: 112 SESEPPKQDYIHVRA-RRGQATDSHSIAERARREKISERMKILQDLVPGCNKMIGKALVL 170
S SE KQ + + +R +A + H+++ER RR++I+ERMK LQ+L+P CNK KA +L
Sbjct: 194 SRSEETKQARVSTTSTKRSRAAEVHNLSERKRRDRINERMKALQELIPRCNKS-DKASML 252
Query: 171 DEIINYIQSLQHQVEFLSM 189
DE I Y++SLQ Q++ +SM
Sbjct: 253 DEAIEYMKSLQLQIQMMSM 271
>AT2G20180.3 | Symbols: PIL5 | phytochrome interacting factor 3-like
5 | chr2:8704276-8706538 REVERSE LENGTH=478
Length = 478
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 56/79 (70%), Gaps = 2/79 (2%)
Query: 112 SESEPPKQDYIHVRA-RRGQATDSHSIAERARREKISERMKILQDLVPGCNKMIGKALVL 170
S SE KQ + + +R +A + H+++ER RR++I+ERMK LQ+L+P CNK KA +L
Sbjct: 265 SRSEETKQARVSTTSTKRSRAAEVHNLSERKRRDRINERMKALQELIPRCNKS-DKASML 323
Query: 171 DEIINYIQSLQHQVEFLSM 189
DE I Y++SLQ Q++ +SM
Sbjct: 324 DEAIEYMKSLQLQIQMMSM 342
>AT2G20180.2 | Symbols: PIL5 | phytochrome interacting factor 3-like
5 | chr2:8704525-8706538 REVERSE LENGTH=478
Length = 478
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 56/79 (70%), Gaps = 2/79 (2%)
Query: 112 SESEPPKQDYIHVRA-RRGQATDSHSIAERARREKISERMKILQDLVPGCNKMIGKALVL 170
S SE KQ + + +R +A + H+++ER RR++I+ERMK LQ+L+P CNK KA +L
Sbjct: 265 SRSEETKQARVSTTSTKRSRAAEVHNLSERKRRDRINERMKALQELIPRCNKS-DKASML 323
Query: 171 DEIINYIQSLQHQVEFLSM 189
DE I Y++SLQ Q++ +SM
Sbjct: 324 DEAIEYMKSLQLQIQMMSM 342
>AT1G09530.2 | Symbols: PIF3, POC1, PAP3 | phytochrome interacting
factor 3 | chr1:3077216-3079367 FORWARD LENGTH=524
Length = 524
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 51/64 (79%), Gaps = 1/64 (1%)
Query: 126 ARRGQATDSHSIAERARREKISERMKILQDLVPGCNKMIGKALVLDEIINYIQSLQHQVE 185
++R ++ + H+++ER RR++I+E+M+ LQ+L+P CNK + KA +LDE I Y++SLQ QV+
Sbjct: 339 SKRSRSAEVHNLSERRRRDRINEKMRALQELIPNCNK-VDKASMLDEAIEYLKSLQLQVQ 397
Query: 186 FLSM 189
+SM
Sbjct: 398 IMSM 401
>AT1G09530.1 | Symbols: PIF3, POC1, PAP3 | phytochrome interacting
factor 3 | chr1:3077216-3079367 FORWARD LENGTH=524
Length = 524
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 51/64 (79%), Gaps = 1/64 (1%)
Query: 126 ARRGQATDSHSIAERARREKISERMKILQDLVPGCNKMIGKALVLDEIINYIQSLQHQVE 185
++R ++ + H+++ER RR++I+E+M+ LQ+L+P CNK + KA +LDE I Y++SLQ QV+
Sbjct: 339 SKRSRSAEVHNLSERRRRDRINEKMRALQELIPNCNK-VDKASMLDEAIEYLKSLQLQVQ 397
Query: 186 FLSM 189
+SM
Sbjct: 398 IMSM 401
>AT1G51140.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:18943802-18945613 REVERSE
LENGTH=379
Length = 379
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 43/64 (67%)
Query: 124 VRARRGQATDSHSIAERARREKISERMKILQDLVPGCNKMIGKALVLDEIINYIQSLQHQ 183
+RA+RG AT SIAER RR KISERM+ LQDLVP + A +LD + YI+ LQ Q
Sbjct: 304 IRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDTQTNTADMLDLAVQYIKDLQEQ 363
Query: 184 VEFL 187
V+ L
Sbjct: 364 VKAL 367
>AT4G02590.2 | Symbols: UNE12 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr4:1137968-1140306
REVERSE LENGTH=310
Length = 310
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 58/83 (69%), Gaps = 1/83 (1%)
Query: 107 QSTKPSESEPPKQDYIHVRARRGQATDSHSIAERARREKISERMKILQDLVPGCNKMIGK 166
Q PS P VRARRGQATD HSIAER RRE+I+ER++ LQ+LVP NK +
Sbjct: 129 QQPPPSAPHQPTSIRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPTVNK-TDR 187
Query: 167 ALVLDEIINYIQSLQHQVEFLSM 189
A ++DEI++Y++ L+ QV+ LSM
Sbjct: 188 AAMIDEIVDYVKFLRLQVKVLSM 210
>AT4G02590.1 | Symbols: UNE12 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr4:1137968-1140306
REVERSE LENGTH=310
Length = 310
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 58/83 (69%), Gaps = 1/83 (1%)
Query: 107 QSTKPSESEPPKQDYIHVRARRGQATDSHSIAERARREKISERMKILQDLVPGCNKMIGK 166
Q PS P VRARRGQATD HSIAER RRE+I+ER++ LQ+LVP NK +
Sbjct: 129 QQPPPSAPHQPTSIRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPTVNK-TDR 187
Query: 167 ALVLDEIINYIQSLQHQVEFLSM 189
A ++DEI++Y++ L+ QV+ LSM
Sbjct: 188 AAMIDEIVDYVKFLRLQVKVLSM 210
>AT2G46970.1 | Symbols: PIL1 | phytochrome interacting factor 3-like
1 | chr2:19295617-19297678 REVERSE LENGTH=416
Length = 416
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 60/101 (59%), Gaps = 13/101 (12%)
Query: 94 EASSVAGSNNSDEQSTKPSESEPPKQDYIHVRAR-----RGQATDSHSIAERARREKISE 148
E S SNNSD++S + +H R R R ++T+ H + ER RR++ ++
Sbjct: 195 EEESTYLSNNSDDESDD-------AKTQVHARTRKPVTKRKRSTEVHKLYERKRRDEFNK 247
Query: 149 RMKILQDLVPGCNKMIGKALVLDEIINYIQSLQHQVEFLSM 189
+M+ LQDL+P C K KA +LDE I Y+++LQ QV+ +SM
Sbjct: 248 KMRALQDLLPNCYK-DDKASLLDEAIKYMRTLQLQVQMMSM 287
>AT4G02590.3 | Symbols: UNE12 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr4:1137968-1140117
REVERSE LENGTH=247
Length = 247
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 58/83 (69%), Gaps = 1/83 (1%)
Query: 107 QSTKPSESEPPKQDYIHVRARRGQATDSHSIAERARREKISERMKILQDLVPGCNKMIGK 166
Q PS P VRARRGQATD HSIAER RRE+I+ER++ LQ+LVP NK +
Sbjct: 66 QQPPPSAPHQPTSIRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPTVNK-TDR 124
Query: 167 ALVLDEIINYIQSLQHQVEFLSM 189
A ++DEI++Y++ L+ QV+ LSM
Sbjct: 125 AAMIDEIVDYVKFLRLQVKVLSM 147
>AT2G42280.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:17611428-17613163 REVERSE
LENGTH=359
Length = 359
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 66/116 (56%), Gaps = 11/116 (9%)
Query: 90 LKAAEASSVAGSNNSDEQSTKPSESEPPKQDYIHVRARRGQATDSHSIAERARREKISER 149
L ++SS A S ++ + +S P K +RA+RG AT SIAER RR +ISER
Sbjct: 250 LSLPKSSSTASDMVSVDKYLQLQDSVPCK-----IRAKRGCATHPRSIAERVRRTRISER 304
Query: 150 MKILQDLVPGCNKMIGKALVLDEIINYIQSLQHQVEFLSMKLEAVNSRANLNPTNE 205
M+ LQ+LVP +K + +LD ++YI+ LQ Q + L+ ++RAN N+
Sbjct: 305 MRKLQELVPNMDKQTNTSDMLDLAVDYIKDLQRQYKILN------DNRANCKCMNK 354
>AT1G03040.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:704279-706457 REVERSE
LENGTH=297
Length = 297
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 62/83 (74%), Gaps = 3/83 (3%)
Query: 109 TKPSESEPPKQDYIH--VRARRGQATDSHSIAERARREKISERMKILQDLVPGCNKMIGK 166
++P+ P +Q I VRARRGQATD HSIAER RRE+I+ER++ LQ+LVP NK +
Sbjct: 122 SQPAPPMPHQQSTIRPRVRARRGQATDPHSIAERLRRERIAERIRSLQELVPTVNK-TDR 180
Query: 167 ALVLDEIINYIQSLQHQVEFLSM 189
A ++DEI++Y++ L+ QV+ LSM
Sbjct: 181 AAMIDEIVDYVKFLRLQVKVLSM 203
>AT1G03040.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:704279-706457 REVERSE
LENGTH=302
Length = 302
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 62/83 (74%), Gaps = 3/83 (3%)
Query: 109 TKPSESEPPKQDYIH--VRARRGQATDSHSIAERARREKISERMKILQDLVPGCNKMIGK 166
++P+ P +Q I VRARRGQATD HSIAER RRE+I+ER++ LQ+LVP NK +
Sbjct: 127 SQPAPPMPHQQSTIRPRVRARRGQATDPHSIAERLRRERIAERIRSLQELVPTVNK-TDR 185
Query: 167 ALVLDEIINYIQSLQHQVEFLSM 189
A ++DEI++Y++ L+ QV+ LSM
Sbjct: 186 AAMIDEIVDYVKFLRLQVKVLSM 208
>AT1G05805.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:1744843-1747427 FORWARD
LENGTH=362
Length = 362
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 5/93 (5%)
Query: 111 PSESEPPKQDYIHVRARRGQATDSHSIAERARREKISERMKILQDLVPGCNKMIGKALVL 170
P +S P K +RA+RG AT SIAER RR +IS ++K LQDLVP +K + +L
Sbjct: 275 PEDSVPCK-----IRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYSDML 329
Query: 171 DEIINYIQSLQHQVEFLSMKLEAVNSRANLNPT 203
D + +I+ LQHQ++ L E + P+
Sbjct: 330 DLAVQHIKGLQHQLQNLKKDQENCTCGCSEKPS 362
>AT2G43140.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:17931680-17935639 REVERSE
LENGTH=309
Length = 309
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 45/69 (65%)
Query: 124 VRARRGQATDSHSIAERARREKISERMKILQDLVPGCNKMIGKALVLDEIINYIQSLQHQ 183
RA+RG AT SIAER RR +IS ++K LQ+LVP +K A +LD + +I+ LQHQ
Sbjct: 231 ARAKRGFATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYADMLDLAVEHIKGLQHQ 290
Query: 184 VEFLSMKLE 192
VE L +E
Sbjct: 291 VESLEKGME 299
>AT4G09180.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:5847513-5849500 FORWARD
LENGTH=262
Length = 262
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 46/67 (68%)
Query: 122 IHVRARRGQATDSHSIAERARREKISERMKILQDLVPGCNKMIGKALVLDEIINYIQSLQ 181
VRA+RG AT SIAER RR +IS+R++ LQ+LVP +K A +L+E + Y++ LQ
Sbjct: 182 FRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLEEAVEYVKVLQ 241
Query: 182 HQVEFLS 188
Q++ L+
Sbjct: 242 RQIQELT 248
>AT1G35460.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:13040092-13041907 FORWARD
LENGTH=259
Length = 259
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 47/65 (72%)
Query: 124 VRARRGQATDSHSIAERARREKISERMKILQDLVPGCNKMIGKALVLDEIINYIQSLQHQ 183
VRA+RG AT SIAER RR +IS+R++ LQ+LVP +K A +L+E + Y+++LQ Q
Sbjct: 181 VRAKRGCATHPRSIAERVRRTRISDRIRRLQELVPNMDKQTNTADMLEEAVEYVKALQSQ 240
Query: 184 VEFLS 188
++ L+
Sbjct: 241 IQELT 245
>AT4G28800.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14221970-14224075 FORWARD
LENGTH=445
Length = 445
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 49/72 (68%), Gaps = 2/72 (2%)
Query: 127 RRGQATDSHSIAERARREKISERMKILQDLVPGCNKMIGKALVLDEIINYIQSLQHQVE- 185
+R + + H++AER RREKI+E+MK LQ L+P CNK K LD+ I Y++SLQ Q++
Sbjct: 252 KRSRTAEMHNLAERRRREKINEKMKTLQQLIPRCNKST-KVSTLDDAIEYVKSLQSQIQG 310
Query: 186 FLSMKLEAVNSR 197
+S + A N++
Sbjct: 311 MMSPMMNAGNTQ 322
>AT4G28815.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14228719-14230288 FORWARD
LENGTH=307
Length = 307
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 54/85 (63%), Gaps = 6/85 (7%)
Query: 127 RRGQATDSHSIAERARREKISERMKILQDLVPGCNKMIGKALVLDEIINYIQSLQHQV-E 185
+R +A + H++AER RREKI+ERMK LQ L+P CNK K +L+++I Y++SL+ Q+ +
Sbjct: 147 KRSRAAEMHNLAERRRREKINERMKTLQQLIPRCNKST-KVSMLEDVIEYVKSLEMQINQ 205
Query: 186 FLSMKLEAVNSRANLNPTNEGFPSK 210
F+ +N P FPS+
Sbjct: 206 FMPHMAMGMNQ----PPAYIPFPSQ 226
>AT2G43140.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:17932376-17935639 REVERSE
LENGTH=297
Length = 297
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 42/62 (67%)
Query: 124 VRARRGQATDSHSIAERARREKISERMKILQDLVPGCNKMIGKALVLDEIINYIQSLQHQ 183
RA+RG AT SIAER RR +IS ++K LQ+LVP +K A +LD + +I+ LQHQ
Sbjct: 233 ARAKRGFATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYADMLDLAVEHIKGLQHQ 292
Query: 184 VE 185
VE
Sbjct: 293 VE 294
>AT4G33880.1 | Symbols: RSL2 | ROOT HAIR DEFECTIVE 6-LIKE 2 |
chr4:16239566-16241052 REVERSE LENGTH=352
Length = 352
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Query: 124 VRARRGQATDSHSIAERARREKISERMKILQDLVPGCNKMIGKALVLDEIINYIQSLQHQ 183
RA RG ATD S+ R RRE+I+ER++ILQ+LVP K + + +L+E ++Y++ LQ Q
Sbjct: 266 TRASRGAATDPQSLYARKRRERINERLRILQNLVPNGTK-VDISTMLEEAVHYVKFLQLQ 324
Query: 184 VEFLS 188
++ LS
Sbjct: 325 IKLLS 329
>AT4G28790.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14218329-14220173 FORWARD
LENGTH=413
Length = 413
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Query: 126 ARRGQATDSHSIAERARREKISERMKILQDLVPGCNKMIGKALVLDEIINYIQSLQHQVE 185
++R +A H ++ER RR+KI+E MK LQ+L+P C K ++ +LD++I Y++SLQ Q++
Sbjct: 273 SKRSRAAIMHKLSERRRRQKINEMMKALQELLPRCTK-TDRSSMLDDVIEYVKSLQSQIQ 331
Query: 186 FLSM 189
SM
Sbjct: 332 MFSM 335
>AT4G00050.1 | Symbols: UNE10 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr4:17863-19848
FORWARD LENGTH=399
Length = 399
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 124 VRARRGQATDSHSIAERARREKISERMKILQDLVPGCNKMIGKALVLDEIINYIQSLQHQ 183
V +R +A H+ +ER RR+KI++RMK LQ LVP +K KA +LDE+I Y++ LQ Q
Sbjct: 207 VSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSK-TDKASMLDEVIEYLKQLQAQ 265
Query: 184 VEFLS 188
V +S
Sbjct: 266 VSMMS 270
>AT2G14760.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:6321840-6323312 REVERSE
LENGTH=328
Length = 328
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 124 VRARRGQATDSHSIAERARREKISERMKILQDLVPGCNKMIGKALVLDEIINYIQSLQHQ 183
RA RG ATD S+ R RRE+I+ER++ILQ LVP K + + +L+E + Y++ LQ Q
Sbjct: 237 TRASRGAATDPQSLYARKRRERINERLRILQHLVPNGTK-VDISTMLEEAVQYVKFLQLQ 295
Query: 184 VEFLS 188
++ LS
Sbjct: 296 IKLLS 300
>AT1G27740.1 | Symbols: RSL4 | root hair defective 6-like 4 |
chr1:9654753-9655806 FORWARD LENGTH=258
Length = 258
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 124 VRARRGQATDSHSIAERARREKISERMKILQDLVPGCNKMIGKALVLDEIINYIQSLQHQ 183
RA +G ATD S+ R RREKI+ER+K LQ+LVP K + + +L+E ++Y++ LQ Q
Sbjct: 167 TRATKGTATDPQSLYARKRREKINERLKTLQNLVPNGTK-VDISTMLEEAVHYVKFLQLQ 225
Query: 184 VEFLS 188
++ LS
Sbjct: 226 IKLLS 230
>AT3G21330.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr3:7507720-7508841 FORWARD
LENGTH=373
Length = 373
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 55/95 (57%), Gaps = 13/95 (13%)
Query: 115 EPPKQDYIHVRARRGQATDSHSIAERARREKISERMKILQDLVPGCNKMIGKALVLDEII 174
E PK+ + + +TD ++A R RRE+ISE++++LQ LVPG KM A +LDE
Sbjct: 266 EKPKRKNVKI------STDPQTVAARQRRERISEKIRVLQTLVPGGTKM-DTASMLDEAA 318
Query: 175 NYIQSLQHQVEFLSMKLEAVNSRANLNPTNEGFPS 209
NY++ L+ QV+ L N R L+ TN F S
Sbjct: 319 NYLKFLRAQVKALE------NLRPKLDQTNLSFSS 347
>AT4G36930.1 | Symbols: SPT | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr4:17414167-17415945
FORWARD LENGTH=373
Length = 373
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 44/61 (72%), Gaps = 1/61 (1%)
Query: 130 QATDSHSIAERARREKISERMKILQDLVPGCNKMIGKALVLDEIINYIQSLQHQVEFLSM 189
+A + H+++E+ RR +I+E+MK LQ L+P NK KA +LDE I Y++ LQ QV+ L+M
Sbjct: 197 RAAEVHNLSEKRRRSRINEKMKALQSLIPNSNK-TDKASMLDEAIEYLKQLQLQVQMLTM 255
Query: 190 K 190
+
Sbjct: 256 R 256
>AT3G59060.4 | Symbols: PIL6, PIF5 | phytochrome interacting factor
3-like 6 | chr3:21828189-21829895 REVERSE LENGTH=444
Length = 444
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 126 ARRGQATDSHSIAERARREKISERMKILQDLVPGCNKMIGKALVLDEIINYIQSLQHQVE 185
RR +A + H+++ER RR++I+ERMK LQ+L+P C++ KA +LDE I+Y++SLQ Q++
Sbjct: 252 TRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSR-TDKASILDEAIDYLKSLQMQLQ 310
Query: 186 FLSM 189
+ M
Sbjct: 311 VMWM 314
>AT3G59060.3 | Symbols: PIL6, PIF5 | phytochrome interacting factor
3-like 6 | chr3:21828189-21829895 REVERSE LENGTH=444
Length = 444
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 126 ARRGQATDSHSIAERARREKISERMKILQDLVPGCNKMIGKALVLDEIINYIQSLQHQVE 185
RR +A + H+++ER RR++I+ERMK LQ+L+P C++ KA +LDE I+Y++SLQ Q++
Sbjct: 252 TRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSR-TDKASILDEAIDYLKSLQMQLQ 310
Query: 186 FLSM 189
+ M
Sbjct: 311 VMWM 314
>AT3G59060.2 | Symbols: PIL6, PIF5 | phytochrome interacting factor
3-like 6 | chr3:21828189-21829895 REVERSE LENGTH=444
Length = 444
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 126 ARRGQATDSHSIAERARREKISERMKILQDLVPGCNKMIGKALVLDEIINYIQSLQHQVE 185
RR +A + H+++ER RR++I+ERMK LQ+L+P C++ KA +LDE I+Y++SLQ Q++
Sbjct: 252 TRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSR-TDKASILDEAIDYLKSLQMQLQ 310
Query: 186 FLSM 189
+ M
Sbjct: 311 VMWM 314
>AT4G28790.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14218329-14219887 FORWARD
LENGTH=340
Length = 340
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 44/60 (73%), Gaps = 1/60 (1%)
Query: 126 ARRGQATDSHSIAERARREKISERMKILQDLVPGCNKMIGKALVLDEIINYIQSLQHQVE 185
++R +A H ++ER RR+KI+E MK LQ+L+P C K ++ +LD++I Y++SLQ Q++
Sbjct: 273 SKRSRAAIMHKLSERRRRQKINEMMKALQELLPRCTK-TDRSSMLDDVIEYVKSLQSQIQ 331
>AT3G59060.1 | Symbols: PIL6, PIF5 | phytochrome interacting factor
3-like 6 | chr3:21828189-21829895 REVERSE LENGTH=442
Length = 442
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 126 ARRGQATDSHSIAERARREKISERMKILQDLVPGCNKMIGKALVLDEIINYIQSLQHQVE 185
RR +A + H+++ER RR++I+ERMK LQ+L+P C++ KA +LDE I+Y++SLQ Q++
Sbjct: 252 TRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSR-TDKASILDEAIDYLKSLQMQLQ 310
Query: 186 FLSM 189
+ M
Sbjct: 311 VMWM 314
>AT2G43010.2 | Symbols: PIF4, SRL2, AtPIF4 | phytochrome interacting
factor 4 | chr2:17887003-17888823 FORWARD LENGTH=428
Length = 428
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 48/61 (78%), Gaps = 1/61 (1%)
Query: 127 RRGQATDSHSIAERARREKISERMKILQDLVPGCNKMIGKALVLDEIINYIQSLQHQVEF 186
RR +A + H+++ER RR++I+ERMK LQ+L+P C+K KA +LDE I+Y++SLQ Q++
Sbjct: 254 RRSRAAEVHNLSERRRRDRINERMKALQELIPHCSK-TDKASILDEAIDYLKSLQLQLQV 312
Query: 187 L 187
+
Sbjct: 313 M 313
>AT2G43010.1 | Symbols: PIF4, SRL2, AtPIF4 | phytochrome interacting
factor 4 | chr2:17887003-17888823 FORWARD LENGTH=430
Length = 430
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 48/61 (78%), Gaps = 1/61 (1%)
Query: 127 RRGQATDSHSIAERARREKISERMKILQDLVPGCNKMIGKALVLDEIINYIQSLQHQVEF 186
RR +A + H+++ER RR++I+ERMK LQ+L+P C+K KA +LDE I+Y++SLQ Q++
Sbjct: 254 RRSRAAEVHNLSERRRRDRINERMKALQELIPHCSK-TDKASILDEAIDYLKSLQLQLQV 312
Query: 187 L 187
+
Sbjct: 313 M 313
>AT5G43175.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:17334261-17335234 FORWARD
LENGTH=223
Length = 223
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
Query: 94 EASSVAGSNNSDEQSTKPSESEPPKQDYIHVRARRGQATDSHSIAERARREKISERMKIL 153
+ S++ N+SD++ S K +A RG A+D S+ R RRE+I++R+K L
Sbjct: 102 DGQSLSSYNSSDDEKALGLVSNTSKSLKRKAKANRGIASDPQSLYARKRRERINDRLKTL 161
Query: 154 QDLVPGCNKMIGKALVLDEIINYIQSLQHQVEFLS 188
Q LVP K + + +L++ ++Y++ LQ Q++ LS
Sbjct: 162 QSLVPNGTK-VDISTMLEDAVHYVKFLQLQIKLLS 195
>AT5G67110.1 | Symbols: ALC | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr5:26785332-26786338
REVERSE LENGTH=210
Length = 210
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 6/68 (8%)
Query: 135 HSIAERARREKISERMKILQDLVPGCNKMIGKALVLDEIINYIQSLQHQVEFLSMKLEAV 194
H+++E+ RR KI+E+MK LQ L+P NK KA +LDE I Y++ LQ QV+ L AV
Sbjct: 98 HNLSEKKRRSKINEKMKALQKLIPNSNK-TDKASMLDEAIEYLKQLQLQVQTL-----AV 151
Query: 195 NSRANLNP 202
+ LNP
Sbjct: 152 MNGLGLNP 159
>AT5G01310.1 | Symbols: APTX | APRATAXIN-like | chr5:125304-128960
FORWARD LENGTH=912
Length = 912
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 125 RARRGQATDSHSIAERARREKISERMKILQDLVPGCNKMIGKALVLDEIINYIQSLQHQV 184
R+ +TD S+A R RR +IS+R KILQ +VPG KM ++ LDE I+Y++ L+ Q+
Sbjct: 38 RSTSTLSTDPQSVAARDRRHRISDRFKILQSMVPGGAKMDTVSM-LDEAISYVKFLKAQI 96
Query: 185 EFLSMKLEAVN 195
+ L +N
Sbjct: 97 WYHQNMLLFIN 107
>AT1G66470.1 | Symbols: RHD6 | ROOT HAIR DEFECTIVE6 |
chr1:24795326-24796598 FORWARD LENGTH=298
Length = 298
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
Query: 133 DSHSIAERARREKISERMKILQDLVPGCNKMIGKALVLDEIINYIQSLQHQVEFLS 188
D S+A + RRE+ISER+KILQ+LVP K + +L++ I+Y++ LQ QV+ L+
Sbjct: 204 DPQSLAAKNRRERISERLKILQELVPNGTK-VDLVTMLEKAISYVKFLQVQVKVLA 258
>AT2G14760.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:6321840-6323312 REVERSE
LENGTH=341
Length = 341
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 14/78 (17%)
Query: 124 VRARRGQATDSHSIAER-------------ARREKISERMKILQDLVPGCNKMIGKALVL 170
RA RG ATD S+ R RRE+I+ER++ILQ LVP K + + +L
Sbjct: 237 TRASRGAATDPQSLYARLKQLNKVHCMMVQKRRERINERLRILQHLVPNGTK-VDISTML 295
Query: 171 DEIINYIQSLQHQVEFLS 188
+E + Y++ LQ Q++ LS
Sbjct: 296 EEAVQYVKFLQLQIKLLS 313
>AT5G37800.1 | Symbols: RSL1, ATRSL1 | RHD SIX-LIKE 1 |
chr5:15036197-15037574 FORWARD LENGTH=307
Length = 307
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Query: 133 DSHSIAERARREKISERMKILQDLVPGCNKMIGKALVLDEIINYIQSLQHQVEFLS 188
D S+A + RRE+ISER+K+LQ+LVP K + +L++ I Y++ LQ QV+ L+
Sbjct: 210 DPQSLAAKNRRERISERLKVLQELVPNGTK-VDLVTMLEKAIGYVKFLQVQVKVLA 264
>AT5G61270.1 | Symbols: PIF7 | phytochrome-interacting factor7 |
chr5:24638873-24640439 REVERSE LENGTH=366
Length = 366
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 127 RRGQATDSHSIAERARREKISERMKILQDLVPGCNKMIGKALVLDEIINYIQSLQHQVEF 186
RRG+A H+ +ER RR++I++RM+ LQ L+P +K K +LD++I +++ LQ QV+F
Sbjct: 163 RRGRAAAIHNESERRRRDRINQRMRTLQKLLPTASK-ADKVSILDDVIEHLKQLQAQVQF 221
Query: 187 LSMK 190
+S++
Sbjct: 222 MSLR 225
>AT5G61270.2 | Symbols: PIF7 | phytochrome-interacting factor7 |
chr5:24638873-24640031 REVERSE LENGTH=278
Length = 278
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 127 RRGQATDSHSIAERARREKISERMKILQDLVPGCNKMIGKALVLDEIINYIQSLQHQVEF 186
RRG+A H+ +ER RR++I++RM+ LQ L+P +K K +LD++I +++ LQ QV+F
Sbjct: 75 RRGRAAAIHNESERRRRDRINQRMRTLQKLLPTASK-ADKVSILDDVIEHLKQLQAQVQF 133
Query: 187 LSMK 190
+S++
Sbjct: 134 MSLR 137
>AT5G41315.1 | Symbols: GL3, MYC6.2 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr5:16529457-16532866
FORWARD LENGTH=637
Length = 637
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 132 TDSHSIAERARREKISERMKILQDLVPGCNKMIGKALVLDEIINYIQSLQHQVEFLSMKL 191
T +H++ E+ RREK++ER L+ ++P NK I K +LD+ I Y+Q L+ +V+ L
Sbjct: 439 TGNHAVLEKKRREKLNERFMTLRKIIPSINK-IDKVSILDDTIEYLQELERRVQELESCR 497
Query: 192 EAVNS 196
E+ ++
Sbjct: 498 ESTDT 502
>AT1G69010.1 | Symbols: BIM2 | BES1-interacting Myc-like protein 2 |
chr1:25941804-25943599 FORWARD LENGTH=311
Length = 311
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 35/51 (68%)
Query: 135 HSIAERARREKISERMKILQDLVPGCNKMIGKALVLDEIINYIQSLQHQVE 185
HS+ E+ RR KI+ER +IL++L+P + A L E+I+Y+Q LQ +V+
Sbjct: 50 HSVTEQRRRSKINERFQILRELIPNSEQKRDTASFLLEVIDYVQYLQEKVQ 100
>AT1G63650.3 | Symbols: EGL3 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr1:23599809-23602734
FORWARD LENGTH=596
Length = 596
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 130 QATDSHSIAERARREKISERMKILQDLVPGCNKMIGKALVLDEIINYIQSLQHQVEFLSM 189
+ T +H+++E+ RREK++ER L+ ++P +K I K +LD+ I Y+Q LQ +V+ L
Sbjct: 401 EETGNHALSEKKRREKLNERFMTLRSIIPSISK-IDKVSILDDTIEYLQDLQKRVQELES 459
Query: 190 KLEAVNSRANLN 201
E+ ++ +
Sbjct: 460 CRESADTETRIT 471
>AT1G63650.2 | Symbols: EGL3, EGL1, ATMYC-2 | basic helix-loop-helix
(bHLH) DNA-binding superfamily protein |
chr1:23599809-23602734 FORWARD LENGTH=596
Length = 596
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 130 QATDSHSIAERARREKISERMKILQDLVPGCNKMIGKALVLDEIINYIQSLQHQVEFLSM 189
+ T +H+++E+ RREK++ER L+ ++P +K I K +LD+ I Y+Q LQ +V+ L
Sbjct: 401 EETGNHALSEKKRREKLNERFMTLRSIIPSISK-IDKVSILDDTIEYLQDLQKRVQELES 459
Query: 190 KLEAVNSRANLN 201
E+ ++ +
Sbjct: 460 CRESADTETRIT 471
>AT1G63650.1 | Symbols: EGL3, EGL1, ATMYC-2 | basic helix-loop-helix
(bHLH) DNA-binding superfamily protein |
chr1:23599809-23602734 FORWARD LENGTH=596
Length = 596
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 130 QATDSHSIAERARREKISERMKILQDLVPGCNKMIGKALVLDEIINYIQSLQHQVEFLSM 189
+ T +H+++E+ RREK++ER L+ ++P +K I K +LD+ I Y+Q LQ +V+ L
Sbjct: 401 EETGNHALSEKKRREKLNERFMTLRSIIPSISK-IDKVSILDDTIEYLQDLQKRVQELES 459
Query: 190 KLEAVNSRANLN 201
E+ ++ +
Sbjct: 460 CRESADTETRIT 471
>AT1G02340.1 | Symbols: HFR1, RSF1, FBI1, REP1 | basic
helix-loop-helix (bHLH) DNA-binding superfamily protein
| chr1:465933-467685 REVERSE LENGTH=292
Length = 292
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 20/89 (22%)
Query: 140 RARREKISERMKILQDLVPGCNKMIGKALVLDEIINYIQSLQHQVEFLSM---------- 189
R R EK+S +M+ LQ LVP C+K K VLD+ I Y+++LQ Q++ +S
Sbjct: 144 RRRDEKMSNKMRKLQQLVPNCHK-TDKVSVLDKTIEYMKNLQLQLQMMSTVGVNPYFLPA 202
Query: 190 ---------KLEAVNSRANLNPTNEGFPS 209
L A+ S LNP N PS
Sbjct: 203 TLGFGMHNHMLTAMASAHGLNPANHMMPS 231