Miyakogusa Predicted Gene

Lj1g3v0426760.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0426760.1 Non Chatacterized Hit- tr|I1K1J8|I1K1J8_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,84.78,0,CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P,NULL;
P-loop containing nucleoside triphosphate hyd,CUFF.25895.1
         (370 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G11010.3 | Symbols:  | Pre-mRNA cleavage complex II protein f...   475   e-134
AT5G11010.2 | Symbols:  | Pre-mRNA cleavage complex II protein f...   475   e-134
AT5G11010.1 | Symbols:  | Pre-mRNA cleavage complex II protein f...   397   e-111

>AT5G11010.3 | Symbols:  | Pre-mRNA cleavage complex II protein
           family | chr5:3484176-3486067 FORWARD LENGTH=368
          Length = 368

 Score =  475 bits (1222), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 228/364 (62%), Positives = 291/364 (79%), Gaps = 8/364 (2%)

Query: 10  YIPEQWSEAAGSIADSSTPP-ITLICGAKNGGKTIFSRYLLNVLLHRYSRVAYLDTDVGQ 68
           +IPE+WS AA S++ SS  P I L+CG KN GK+ FSR L+ VLL RY RVAYLDTDVGQ
Sbjct: 10  FIPEEWSNAASSVSCSSLQPVIALVCGPKNSGKSTFSRNLVEVLLQRYKRVAYLDTDVGQ 69

Query: 69  PEFTAPAFLSLTIVHQE--TPDITIPCLKTPERCLFFGDVSSKRDPTSYLNYVFAIYDYY 126
           PEFTAP FLSLTIV +     D T+PC+KTPERC F+GDVSSKRDP +YL YV+ ++DYY
Sbjct: 70  PEFTAPGFLSLTIVDKSILESDWTVPCVKTPERCFFYGDVSSKRDPKAYLRYVYTLFDYY 129

Query: 127 RKEYCSLDKEENSPMIDLPLIVNTPGWVKGVGYSVLVDMLKYICPTHVVKLSISSENKNL 186
           +  +C     EN    +LPL++NTPGWVKG+GY +LVD+L+Y+ P+HVVK++IS+ NKNL
Sbjct: 130 QLHFCK--SSENK--TELPLVINTPGWVKGIGYELLVDVLRYVSPSHVVKINISAYNKNL 185

Query: 187 PAGQFWLDGEHNGTINLIEINSARQDSLNRSVLVQKDARLLRDLRIMAYFRQCFPSDSDI 246
           PAG FWLDG  + T +LIEI SA QD  N+S+L+ KDARL+RD+RI+AYFRQCF    ++
Sbjct: 186 PAGLFWLDGNDDETAHLIEIQSAYQDRYNQSILIHKDARLMRDMRIIAYFRQCFKG-KEV 244

Query: 247 STIKELAHSLASHCPYEVPIASIKIQHLHREVPSSEMFYSLNASIVGLAVDSEGPENLPW 306
           +TIKEL H LASH PYEVPI+S+ I HLH ++PSSE++YSLNASIVGL + +E  E+LP 
Sbjct: 245 NTIKELTHELASHIPYEVPISSLTINHLHCQIPSSEVYYSLNASIVGLGISTEVFEDLPS 304

Query: 307 CLGLGIVRGIDTIKGVLYVITPVPHSSLDKVNLLLQGYIQIPICLLQVQGCISPYMSADV 366
           C+GLGIVRGIDT +G+LYVITPVP + ++KV+LLLQGYIQ+P CLL+V+   SPY+SA+V
Sbjct: 305 CVGLGIVRGIDTERGILYVITPVPENLVEKVDLLLQGYIQLPTCLLEVKDYRSPYLSANV 364

Query: 367 LTTS 370
           L ++
Sbjct: 365 LAST 368


>AT5G11010.2 | Symbols:  | Pre-mRNA cleavage complex II protein
           family | chr5:3484176-3486067 FORWARD LENGTH=368
          Length = 368

 Score =  475 bits (1222), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 228/364 (62%), Positives = 291/364 (79%), Gaps = 8/364 (2%)

Query: 10  YIPEQWSEAAGSIADSSTPP-ITLICGAKNGGKTIFSRYLLNVLLHRYSRVAYLDTDVGQ 68
           +IPE+WS AA S++ SS  P I L+CG KN GK+ FSR L+ VLL RY RVAYLDTDVGQ
Sbjct: 10  FIPEEWSNAASSVSCSSLQPVIALVCGPKNSGKSTFSRNLVEVLLQRYKRVAYLDTDVGQ 69

Query: 69  PEFTAPAFLSLTIVHQE--TPDITIPCLKTPERCLFFGDVSSKRDPTSYLNYVFAIYDYY 126
           PEFTAP FLSLTIV +     D T+PC+KTPERC F+GDVSSKRDP +YL YV+ ++DYY
Sbjct: 70  PEFTAPGFLSLTIVDKSILESDWTVPCVKTPERCFFYGDVSSKRDPKAYLRYVYTLFDYY 129

Query: 127 RKEYCSLDKEENSPMIDLPLIVNTPGWVKGVGYSVLVDMLKYICPTHVVKLSISSENKNL 186
           +  +C     EN    +LPL++NTPGWVKG+GY +LVD+L+Y+ P+HVVK++IS+ NKNL
Sbjct: 130 QLHFCK--SSENK--TELPLVINTPGWVKGIGYELLVDVLRYVSPSHVVKINISAYNKNL 185

Query: 187 PAGQFWLDGEHNGTINLIEINSARQDSLNRSVLVQKDARLLRDLRIMAYFRQCFPSDSDI 246
           PAG FWLDG  + T +LIEI SA QD  N+S+L+ KDARL+RD+RI+AYFRQCF    ++
Sbjct: 186 PAGLFWLDGNDDETAHLIEIQSAYQDRYNQSILIHKDARLMRDMRIIAYFRQCFKG-KEV 244

Query: 247 STIKELAHSLASHCPYEVPIASIKIQHLHREVPSSEMFYSLNASIVGLAVDSEGPENLPW 306
           +TIKEL H LASH PYEVPI+S+ I HLH ++PSSE++YSLNASIVGL + +E  E+LP 
Sbjct: 245 NTIKELTHELASHIPYEVPISSLTINHLHCQIPSSEVYYSLNASIVGLGISTEVFEDLPS 304

Query: 307 CLGLGIVRGIDTIKGVLYVITPVPHSSLDKVNLLLQGYIQIPICLLQVQGCISPYMSADV 366
           C+GLGIVRGIDT +G+LYVITPVP + ++KV+LLLQGYIQ+P CLL+V+   SPY+SA+V
Sbjct: 305 CVGLGIVRGIDTERGILYVITPVPENLVEKVDLLLQGYIQLPTCLLEVKDYRSPYLSANV 364

Query: 367 LTTS 370
           L ++
Sbjct: 365 LAST 368


>AT5G11010.1 | Symbols:  | Pre-mRNA cleavage complex II protein
           family | chr5:3484176-3485831 FORWARD LENGTH=318
          Length = 318

 Score =  397 bits (1019), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 188/305 (61%), Positives = 240/305 (78%), Gaps = 8/305 (2%)

Query: 10  YIPEQWSEAAGSIADSSTPP-ITLICGAKNGGKTIFSRYLLNVLLHRYSRVAYLDTDVGQ 68
           +IPE+WS AA S++ SS  P I L+CG KN GK+ FSR L+ VLL RY RVAYLDTDVGQ
Sbjct: 10  FIPEEWSNAASSVSCSSLQPVIALVCGPKNSGKSTFSRNLVEVLLQRYKRVAYLDTDVGQ 69

Query: 69  PEFTAPAFLSLTIVHQE--TPDITIPCLKTPERCLFFGDVSSKRDPTSYLNYVFAIYDYY 126
           PEFTAP FLSLTIV +     D T+PC+KTPERC F+GDVSSKRDP +YL YV+ ++DYY
Sbjct: 70  PEFTAPGFLSLTIVDKSILESDWTVPCVKTPERCFFYGDVSSKRDPKAYLRYVYTLFDYY 129

Query: 127 RKEYCSLDKEENSPMIDLPLIVNTPGWVKGVGYSVLVDMLKYICPTHVVKLSISSENKNL 186
           +  +C   + +     +LPL++NTPGWVKG+GY +LVD+L+Y+ P+HVVK++IS+ NKNL
Sbjct: 130 QLHFCKSSENKT----ELPLVINTPGWVKGIGYELLVDVLRYVSPSHVVKINISAYNKNL 185

Query: 187 PAGQFWLDGEHNGTINLIEINSARQDSLNRSVLVQKDARLLRDLRIMAYFRQCFPSDSDI 246
           PAG FWLDG  + T +LIEI SA QD  N+S+L+ KDARL+RD+RI+AYFRQCF    ++
Sbjct: 186 PAGLFWLDGNDDETAHLIEIQSAYQDRYNQSILIHKDARLMRDMRIIAYFRQCFKG-KEV 244

Query: 247 STIKELAHSLASHCPYEVPIASIKIQHLHREVPSSEMFYSLNASIVGLAVDSEGPENLPW 306
           +TIKEL H LASH PYEVPI+S+ I HLH ++PSSE++YSLNASIVGL + +E  E+LP 
Sbjct: 245 NTIKELTHELASHIPYEVPISSLTINHLHCQIPSSEVYYSLNASIVGLGISTEVFEDLPS 304

Query: 307 CLGLG 311
           C+GLG
Sbjct: 305 CVGLG 309