Miyakogusa Predicted Gene

Lj1g3v0415990.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0415990.1 tr|Q952Q7|Q952Q7_SOLLC Succinate dehydrogenase
subunit 4 (Fragment) OS=Solanum lycopersicum GN=sdh4
,45.68,0.000000000006,seg,NULL; no description,NULL,CUFF.25866.1
         (80 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G46505.1 | Symbols: SDH4 | succinate dehydrogenase subunit 4 ...    56   5e-09

>AT2G46505.1 | Symbols: SDH4 | succinate dehydrogenase subunit 4 |
           chr2:19090013-19090468 REVERSE LENGTH=151
          Length = 151

 Score = 55.8 bits (133), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 25/43 (58%), Positives = 32/43 (74%)

Query: 33  VFWHTHAGIEEILADYVHHEVTREFVSISLRLFLIIAMKDVFL 75
           V +H H G+EEILADYVH E+TR  + +SL LF II +KD+ L
Sbjct: 106 VVFHIHEGMEEILADYVHQEMTRNLIVMSLGLFQIIVLKDIIL 148