Miyakogusa Predicted Gene
- Lj1g3v0415900.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v0415900.1 tr|A9SXC9|A9SXC9_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_231478,42,0.00008,E2F_TDP,Transcription factor
E2F/dimerisation partner (TDP); "Winged helix" DNA-binding
domain,NULL;,CUFF.25793.1
(372 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G48160.2 | Symbols: DEL1, E2L3, E2FE | DP-E2F-like 1 | chr3:1... 357 6e-99
AT3G48160.1 | Symbols: DEL1, E2L3, E2FE | DP-E2F-like 1 | chr3:1... 323 2e-88
AT3G01330.1 | Symbols: DEL3, E2L2, E2FF | DP-E2F-like protein 3 ... 315 4e-86
AT5G14960.1 | Symbols: DEL2, E2L1, E2FD | DP-E2F-like 2 | chr5:4... 262 3e-70
AT5G22220.3 | Symbols: E2F1, E2FB, ATE2FB | E2F transcription fa... 64 2e-10
AT5G22220.2 | Symbols: E2F1, E2FB, ATE2FB | E2F transcription fa... 64 2e-10
AT2G36010.3 | Symbols: E2F3, ATE2FA | E2F transcription factor 3... 59 4e-09
AT2G36010.1 | Symbols: E2F3, ATE2FA | E2F transcription factor 3... 59 4e-09
AT1G47870.2 | Symbols: ATE2F2 | winged-helix DNA-binding transcr... 56 5e-08
AT1G47870.1 | Symbols: E2FC, ATE2F2, ATE2FC | winged-helix DNA-b... 56 5e-08
AT2G36010.2 | Symbols: E2F3, ATE2FA | E2F transcription factor 3... 52 8e-07
>AT3G48160.2 | Symbols: DEL1, E2L3, E2FE | DP-E2F-like 1 |
chr3:17783641-17785846 FORWARD LENGTH=403
Length = 403
Score = 357 bits (917), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 197/373 (52%), Positives = 257/373 (68%), Gaps = 16/373 (4%)
Query: 10 HHTYNRKQKSLGLLCTNFLSLYNKEGIHLIGLDDACSRLGVERRRIYDIVNVLESVGMLA 69
HH+Y+RKQKSLGLLCTNFL+LYN+EGI ++GLDDA S+LGVERRRIYDIVNVLESVG+L
Sbjct: 29 HHSYSRKQKSLGLLCTNFLALYNREGIEMVGLDDAASKLGVERRRIYDIVNVLESVGVLT 88
Query: 70 RKAKNQYTWKGFAVIPEALRELKDEGLKEN---LFDAANDSAKVSDDEYDEEANPATGSQ 126
R+AKNQYTWKGF+ IP AL+EL++EG+K+ + N +D+ +E + P + SQ
Sbjct: 89 RRAKNQYTWKGFSAIPGALKELQEEGVKDTFHRFYVNENVKGSDDEDDDEESSQPHSSSQ 148
Query: 127 NDKSNSDSATLVK-SSQNENRKEKSLTLLTQNFVKLFVCSN-IQMVSLDDAAKLLLGNV- 183
D S S S+ +NR+EKSL LLTQNF+KLF+CS I+++SLDDAAKLLLG+
Sbjct: 149 TDSSKPGSLPQSSDPSKIDNRREKSLGLLTQNFIKLFICSEAIRIISLDDAAKLLLGDAH 208
Query: 184 DTAMMRTKVRRLYDIANVLSSINLIEKTHMAESRKPAFRWLGLKGKTRSESGNSAQDPNT 243
+T++MRTKVRRLYDIANVLSS+NLIEKTH +SRKPAF+WLG G+ + + D
Sbjct: 209 NTSIMRTKVRRLYDIANVLSSMNLIEKTHTLDSRKPAFKWLGYNGE---PTFTLSSDLLQ 265
Query: 244 NESRKRLFGSDITNISFKRNKVDLFMNEGDFYKNSNMENKHDNLNCQGQSEKSNSKQDAK 303
ESRKR FG+DITN++ KR+K E + M+ KH + KS +++
Sbjct: 266 LESRKRAFGTDITNVNVKRSKSSSSSQENATERRLKMK-KHS--TPESSYNKSFDVHESR 322
Query: 304 QTT-GCYQFGPFAP---RKVGASENDNVKQVHDWESLAKAHRPQYENLALRDLFSHYTEA 359
+ G Y FGPFAP A DN ++ D E+L +RP Y+N L+DLFSHY +A
Sbjct: 323 HGSRGGYHFGPFAPGTGTYPTAGLEDNSRRAFDVENLDSDYRPSYQNQVLKDLFSHYMDA 382
Query: 360 WKSWYSEVAGKRP 372
WK+W+SEV + P
Sbjct: 383 WKTWFSEVTQENP 395
>AT3G48160.1 | Symbols: DEL1, E2L3, E2FE | DP-E2F-like 1 |
chr3:17783641-17785688 FORWARD LENGTH=379
Length = 379
Score = 323 bits (827), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 186/357 (52%), Positives = 243/357 (68%), Gaps = 20/357 (5%)
Query: 10 HHTYNRKQKSLGLLCTNFLSLYNKEGIHLIGLDDACSRLGVERRRIYDIVNVLESVGMLA 69
HH+Y+RKQKSLGLLCTNFL+LYN+EGI ++GLDDA S+LGVERRRIYDIVNVLESVG+L
Sbjct: 29 HHSYSRKQKSLGLLCTNFLALYNREGIEMVGLDDAASKLGVERRRIYDIVNVLESVGVLT 88
Query: 70 RKAKNQYTWKGFAVIPEALRELKDEGLKEN---LFDAANDSAKVSDDEYDEEANPATGSQ 126
R+AKNQYTWKGF+ IP AL+EL++EG+K+ + N +D+ +E + P + SQ
Sbjct: 89 RRAKNQYTWKGFSAIPGALKELQEEGVKDTFHRFYVNENVKGSDDEDDDEESSQPHSSSQ 148
Query: 127 NDKSNSDSATLVKS---SQNENRKEKSLTLLTQNFVKLFVCSN-IQMVSLDDAAKLLLGN 182
D S S L +S S+ +NR+EKSL LLTQNF+KLF+CS I+++SLDDAAKLLLG+
Sbjct: 149 TDSSKPGS--LPQSSDPSKIDNRREKSLGLLTQNFIKLFICSEAIRIISLDDAAKLLLGD 206
Query: 183 V-DTAMMRTKVRRLYDIANVLSSINLIEKTHMAESRKPAFRWLGLKGKTRSESGNSAQDP 241
+T++MRTKVRRLYDIANVLSS+NLIEKTH +SRKPAF+WLG G+ + + D
Sbjct: 207 AHNTSIMRTKVRRLYDIANVLSSMNLIEKTHTLDSRKPAFKWLGYNGE---PTFTLSSDL 263
Query: 242 NTNESRKRLFGSDITNISFKRNKVDLFMNEGDFYKNSNMENKHDNLNCQGQSEKSNSKQD 301
ESRKR FG+DITN++ KR+K E + M+ KH + KS +
Sbjct: 264 LQLESRKRAFGTDITNVNVKRSKSSSSSQENATERRLKMK-KHS--TPESSYNKSFDVHE 320
Query: 302 AKQTT-GCYQFGPFAPRK---VGASENDNVKQVHDWESLAKAHRPQYENLALRDLFS 354
++ + G Y FGPFAP A DN ++ D E+L +RP Y+N LF+
Sbjct: 321 SRHGSRGGYHFGPFAPGTGTYPTAGLEDNSRRAFDVENLDSDYRPSYQNQGAYILFT 377
>AT3G01330.1 | Symbols: DEL3, E2L2, E2FF | DP-E2F-like protein 3 |
chr3:124596-126805 REVERSE LENGTH=354
Length = 354
Score = 315 bits (806), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 178/364 (48%), Positives = 248/364 (68%), Gaps = 37/364 (10%)
Query: 11 HTYNRKQKSLGLLCTNFLSLYNKEGIHLIGLDDACSRLGVERRRIYDIVNVLESVGMLAR 70
Y+RK+KSLG+L +NFL LYN++ + LIGLDDA +LGVERRRIYD+VN+LES+G++AR
Sbjct: 17 QIYSRKEKSLGVLVSNFLRLYNRDDVDLIGLDDAAGQLGVERRRIYDVVNILESIGIVAR 76
Query: 71 KAKNQYTWKGFAVIPEALRELKDEGLKENL-FDAANDSAKVSDDEYDEEANPATGSQNDK 129
+ KNQY+WKGF IP +L ELK+EG++E L + ++N+S KVS+ EE P T + +D+
Sbjct: 77 RGKNQYSWKGFGEIPRSLDELKEEGMRERLGYSSSNNSDKVSNGCEREE--PLTLTPDDQ 134
Query: 130 SNSDSATLVKSSQNENRKEKSLTLLTQNFVKLFVCSNIQMVSLDDAAKLLLGN-VDTAMM 188
NS SS+ + +KEKSL LL QNFVK+F+CS+ +++LD AAK LL + D+ M
Sbjct: 135 ENSS------SSKMDQKKEKSLWLLAQNFVKMFLCSDDDLITLDSAAKALLSDSPDSVHM 188
Query: 189 RTKVRRLYDIANVLSSINLIEKTHMAESRKPAFRWLGLKGKTRSESGNSAQDPNTNESRK 248
RTKVRRLYDIANV +S+NLIEKTH+ +RKPA+RWLG K+ +E G S N+ E K
Sbjct: 189 RTKVRRLYDIANVFASMNLIEKTHIPVTRKPAYRWLG--SKSIAERGLSLF--NSGEP-K 243
Query: 249 RLFGSDITNISFKRNKVDL-FMNEGDFYKNSNMENKHDNLNCQGQSEKSNSKQDAKQTTG 307
R+FG++ITN+ KRNK + + YK KHD + N++Q++K
Sbjct: 244 RVFGTEITNLRAKRNKTYCSSIRKQIGYK------KHD---------EENTEQESKPAAS 288
Query: 308 CYQFGPFAPRKVGASENDNVK----QVHDWESLAKAHRPQYENLALRDLFSHYTEAWKSW 363
Y FGPF+P +GAS+ +N K ++ + E+LA ++PQY N + L H+TEAWK W
Sbjct: 289 KYVFGPFSP--IGASKTNNDKVGKGRLLEIEALASTYQPQYCNQEITGLLGHFTEAWKKW 346
Query: 364 YSEV 367
Y+EV
Sbjct: 347 YAEV 350
>AT5G14960.1 | Symbols: DEL2, E2L1, E2FD | DP-E2F-like 2 |
chr5:4843966-4846373 FORWARD LENGTH=359
Length = 359
Score = 262 bits (669), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 155/367 (42%), Positives = 218/367 (59%), Gaps = 28/367 (7%)
Query: 11 HTYNRKQKSLGLLCTNFLSLYNKEGIHLIGLDDACSRLGVERRRIYDIVNVLESVGMLAR 70
Y+RK KSLG+L NFL+LYN+ + L GLDDA ++LGVERRRIYD+VN+LES+G++AR
Sbjct: 9 QVYSRKDKSLGVLVANFLTLYNRPDVDLFGLDDAAAKLGVERRRIYDVVNILESIGLVAR 68
Query: 71 KAKNQYTWKGFAVIPEALRELKDEGLKENLFDAANDSAKVSDDEYDEEANPATGSQNDKS 130
KNQY+WKGF +P AL ELK+EG+KE F AK Y++E G ++
Sbjct: 69 SGKNQYSWKGFGAVPRALSELKEEGMKEK-FAIVPFVAKSEMVVYEKE-----GEESFML 122
Query: 131 NSDSATLVKSSQNENRKEKSLTLLTQNFVKLFVCSNIQMVSLDDAAKLLLGNVDTAMMRT 190
+ D S + +NRKE++L LL QNFVKLF+CS+ +V+ D A K LL MR
Sbjct: 123 SPDDQEFSPSPRPDNRKERTLWLLAQNFVKLFLCSDDDLVTFDSATKALLNESQDMNMRK 182
Query: 191 KVRRLYDIANVLSSINLIEKTHMAESRKPAFRWLGLKG--KTRSESGNSAQDPNTNESRK 248
KVRRLYDIANV SS+ LIEKTH+ E++KPA+RWLG K + R G SA + N +K
Sbjct: 183 KVRRLYDIANVFSSMKLIEKTHVPETKKPAYRWLGSKTIFENRFIDG-SASLCDRNVPKK 241
Query: 249 RLFGSDITNISFKRNKVDLFMNEGDFYKNSNMENKHDNLNCQGQSEKSNSKQDAKQTTGC 308
R FG+++TN++ KRNK K + N + N + + E+ + D K
Sbjct: 242 RAFGTELTNVNAKRNK-------SGCSKEDSKRNGNQNTSIVIKQEQCD---DVKPDVKN 291
Query: 309 YQFGPFAPRKVGASENDNV-------KQVHDWESLAKAHRPQYENLALRDLFSHYTEAWK 361
+ G P G SE++++ ++ E+L+ ++P Y N L LF+HY E ++
Sbjct: 292 FASGSSTP--AGTSESNDMGNNIRPRGRLGVIEALSTLYQPSYCNPELLGLFAHYNETFR 349
Query: 362 SWYSEVA 368
S+ E
Sbjct: 350 SYQEEFG 356
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 14/99 (14%)
Query: 136 TLVKSSQNENRKEKSLTLLTQNFVKLFVCSNIQMVSLDDAAKLLLGNVDTAMMRTKVRRL 195
+L + Q +RK+KSL +L NF+ L+ ++ + LDDAA A + + RR+
Sbjct: 3 SLALAPQVYSRKDKSLGVLVANFLTLYNRPDVDLFGLDDAA---------AKLGVERRRI 53
Query: 196 YDIANVLSSINLIEKTHMAESRKPAFRWLGLKGKTRSES 234
YD+ N+L SI L+ A S K + W G R+ S
Sbjct: 54 YDVVNILESIGLV-----ARSGKNQYSWKGFGAVPRALS 87
>AT5G22220.3 | Symbols: E2F1, E2FB, ATE2FB | E2F transcription
factor 1 | chr5:7360749-7364120 FORWARD LENGTH=466
Length = 466
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 75/155 (48%), Gaps = 28/155 (18%)
Query: 15 RKQKSLGLLCTNFLSLYNKEGIHLIGLDDACSRLGVERRRIYDIVNVLESVGMLARKAKN 74
R SLGLL F++L + ++ L+ A L V++RRIYDI NVLE +G++ + KN
Sbjct: 129 RYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKTLKN 188
Query: 75 QYTWKGFAV-----IPEALRELKDEGLKENLFDAANDSAKVSDDEYDEEANPATGSQNDK 129
+ WKG V E++ L+DE +NL A + A++ DD+ E T D+
Sbjct: 189 RIQWKGLDVSKPGETIESIANLQDE--VQNL---AAEEARL-DDQIRESQERLTSLSEDE 242
Query: 130 SNSDSATLVKSSQNENRKEKSLTLLTQNFVKLFVC 164
+N K L +T+N +K C
Sbjct: 243 NN-----------------KRLLFVTENDIKNLPC 260
>AT5G22220.2 | Symbols: E2F1, E2FB, ATE2FB | E2F transcription
factor 1 | chr5:7360749-7364120 FORWARD LENGTH=469
Length = 469
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 5/85 (5%)
Query: 15 RKQKSLGLLCTNFLSLYNKEGIHLIGLDDACSRLGVERRRIYDIVNVLESVGMLARKAKN 74
R SLGLL F++L + ++ L+ A L V++RRIYDI NVLE +G++ + KN
Sbjct: 129 RYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKTLKN 188
Query: 75 QYTWKGFAV-----IPEALRELKDE 94
+ WKG V E++ L+DE
Sbjct: 189 RIQWKGLDVSKPGETIESIANLQDE 213
>AT2G36010.3 | Symbols: E2F3, ATE2FA | E2F transcription factor 3 |
chr2:15119688-15122893 FORWARD LENGTH=485
Length = 485
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 41/71 (57%)
Query: 15 RKQKSLGLLCTNFLSLYNKEGIHLIGLDDACSRLGVERRRIYDIVNVLESVGMLARKAKN 74
R SLGLL F++L + ++ L+ A L V++RRIYDI NVLE + ++ + KN
Sbjct: 167 RYDSSLGLLTKKFVNLIKQAKDGMLDLNKAAETLEVQKRRIYDITNVLEGIDLIEKPFKN 226
Query: 75 QYTWKGFAVIP 85
+ WKG P
Sbjct: 227 RILWKGVDACP 237
>AT2G36010.1 | Symbols: E2F3, ATE2FA | E2F transcription factor 3 |
chr2:15119688-15122893 FORWARD LENGTH=483
Length = 483
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 41/71 (57%)
Query: 15 RKQKSLGLLCTNFLSLYNKEGIHLIGLDDACSRLGVERRRIYDIVNVLESVGMLARKAKN 74
R SLGLL F++L + ++ L+ A L V++RRIYDI NVLE + ++ + KN
Sbjct: 167 RYDSSLGLLTKKFVNLIKQAKDGMLDLNKAAETLEVQKRRIYDITNVLEGIDLIEKPFKN 226
Query: 75 QYTWKGFAVIP 85
+ WKG P
Sbjct: 227 RILWKGVDACP 237
>AT1G47870.2 | Symbols: ATE2F2 | winged-helix DNA-binding
transcription factor family protein |
chr1:17634937-17637557 FORWARD LENGTH=395
Length = 395
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%)
Query: 15 RKQKSLGLLCTNFLSLYNKEGIHLIGLDDACSRLGVERRRIYDIVNVLESVGMLARKAKN 74
R SLGLL F+ L + + L+ L V++RRIYDI NVLE +G++ + KN
Sbjct: 154 RYDSSLGLLTKKFVKLIQEAEDGTLDLNYCAVVLEVQKRRIYDITNVLEGIGLIEKTTKN 213
Query: 75 QYTWKG 80
WKG
Sbjct: 214 HIRWKG 219
>AT1G47870.1 | Symbols: E2FC, ATE2F2, ATE2FC | winged-helix
DNA-binding transcription factor family protein |
chr1:17634937-17637557 FORWARD LENGTH=396
Length = 396
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%)
Query: 15 RKQKSLGLLCTNFLSLYNKEGIHLIGLDDACSRLGVERRRIYDIVNVLESVGMLARKAKN 74
R SLGLL F+ L + + L+ L V++RRIYDI NVLE +G++ + KN
Sbjct: 155 RYDSSLGLLTKKFVKLIQEAEDGTLDLNYCAVVLEVQKRRIYDITNVLEGIGLIEKTTKN 214
Query: 75 QYTWKG 80
WKG
Sbjct: 215 HIRWKG 220
>AT2G36010.2 | Symbols: E2F3, ATE2FA | E2F transcription factor 3 |
chr2:15119688-15122893 FORWARD LENGTH=514
Length = 514
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%)
Query: 22 LLCTNFLSLYNKEGIHLIGLDDACSRLGVERRRIYDIVNVLESVGMLARKAKNQYTWKGF 81
LL F++L + ++ L+ A L V++RRIYDI NVLE + ++ + KN+ WKG
Sbjct: 220 LLTKKFVNLIKQAKDGMLDLNKAAETLEVQKRRIYDITNVLEGIDLIEKPFKNRILWKGV 279
Query: 82 AVIP 85
P
Sbjct: 280 DACP 283