Miyakogusa Predicted Gene
- Lj1g3v0395790.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v0395790.1 tr|A9S777|A9S777_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_181893,43.52,1e-18,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,CUFF.25641.1
(131 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G62960.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 185 7e-48
AT1G10660.1 | Symbols: | unknown protein; LOCATED IN: endomembr... 166 5e-42
AT1G10660.4 | Symbols: | unknown protein; LOCATED IN: endomembr... 166 5e-42
AT1G10660.3 | Symbols: | unknown protein; LOCATED IN: endomembr... 166 5e-42
AT1G10660.2 | Symbols: | unknown protein; LOCATED IN: endomembr... 166 5e-42
AT3G27770.2 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 137 1e-33
AT3G27770.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 137 2e-33
AT2G47115.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 137 2e-33
AT1G70505.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 65 1e-11
>AT5G62960.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G10660.1); Has 35333 Blast hits to 34131
proteins in 2444 species: Archae - 798; Bacteria -
22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
chr5:25269444-25271533 FORWARD LENGTH=347
Length = 347
Score = 185 bits (470), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 84/131 (64%), Positives = 105/131 (80%)
Query: 1 MLTDCVFWFVIVPFLTNRDYNLSFLTVCMHSLNAVFLIGDTALNCLRFPWFRIGYFCLWT 60
+LTDCVFWF+IVPFL DY+L+ L + MHSLNA+FL+GD ALN L FP FRI YF WT
Sbjct: 217 LLTDCVFWFIIVPFLEIHDYSLNVLVINMHSLNAIFLLGDAALNSLSFPCFRIAYFFFWT 276
Query: 61 ATYLIFQWIVHACINLWWPYPFLDLSSSYAPLWYFAVALLHIPCYGIFALVMKLKHYVFT 120
Y+IFQW +H+ +++WWPYPFLDLSS YAPLWYF+VA++H+PCYG FAL++KLKH +
Sbjct: 277 IAYVIFQWALHSLVHIWWPYPFLDLSSHYAPLWYFSVAVMHLPCYGAFALLVKLKHRLLQ 336
Query: 121 TWCPDSYQCLR 131
W P+SYQ R
Sbjct: 337 RWFPESYQSPR 347
>AT1G10660.1 | Symbols: | unknown protein; LOCATED IN: endomembrane
system; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G62960.1);
Has 155 Blast hits to 154 proteins in 22 species: Archae
- 0; Bacteria - 0; Metazoa - 10; Fungi - 4; Plants -
139; Viruses - 0; Other Eukaryotes - 2 (source: NCBI
BLink). | chr1:3533009-3534781 FORWARD LENGTH=320
Length = 320
Score = 166 bits (419), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 78/118 (66%), Positives = 95/118 (80%), Gaps = 2/118 (1%)
Query: 1 MLTDCVFWFVIVPFLTNRDYNLSFLTVCMHSLNAVFLIGDTALNCLRFPWFRIGYFCLWT 60
+LTD VFW +I PF + Y LSFL VCMHSLNAVFL+GDT+LN LRFP FRI YF LW+
Sbjct: 198 VLTDIVFWAIIYPF--TKGYKLSFLDVCMHSLNAVFLLGDTSLNSLRFPLFRIAYFVLWS 255
Query: 61 ATYLIFQWIVHACINLWWPYPFLDLSSSYAPLWYFAVALLHIPCYGIFALVMKLKHYV 118
++ +QWI+HA NLWWPY FLDLSS YAPLWY VA++HIPC+ +FALV+KLK+Y+
Sbjct: 256 CIFVAYQWIIHAVKNLWWPYQFLDLSSPYAPLWYLGVAVMHIPCFAVFALVIKLKNYL 313
>AT1G10660.4 | Symbols: | unknown protein; LOCATED IN: endomembrane
system; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G62960.1);
Has 35333 Blast hits to 34131 proteins in 2444 species:
Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi -
991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610
(source: NCBI BLink). | chr1:3533009-3534781 FORWARD
LENGTH=320
Length = 320
Score = 166 bits (419), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 78/118 (66%), Positives = 95/118 (80%), Gaps = 2/118 (1%)
Query: 1 MLTDCVFWFVIVPFLTNRDYNLSFLTVCMHSLNAVFLIGDTALNCLRFPWFRIGYFCLWT 60
+LTD VFW +I PF + Y LSFL VCMHSLNAVFL+GDT+LN LRFP FRI YF LW+
Sbjct: 198 VLTDIVFWAIIYPF--TKGYKLSFLDVCMHSLNAVFLLGDTSLNSLRFPLFRIAYFVLWS 255
Query: 61 ATYLIFQWIVHACINLWWPYPFLDLSSSYAPLWYFAVALLHIPCYGIFALVMKLKHYV 118
++ +QWI+HA NLWWPY FLDLSS YAPLWY VA++HIPC+ +FALV+KLK+Y+
Sbjct: 256 CIFVAYQWIIHAVKNLWWPYQFLDLSSPYAPLWYLGVAVMHIPCFAVFALVIKLKNYL 313
>AT1G10660.3 | Symbols: | unknown protein; LOCATED IN: endomembrane
system; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G62960.1);
Has 35333 Blast hits to 34131 proteins in 2444 species:
Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi -
991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610
(source: NCBI BLink). | chr1:3533009-3534781 FORWARD
LENGTH=320
Length = 320
Score = 166 bits (419), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 78/118 (66%), Positives = 95/118 (80%), Gaps = 2/118 (1%)
Query: 1 MLTDCVFWFVIVPFLTNRDYNLSFLTVCMHSLNAVFLIGDTALNCLRFPWFRIGYFCLWT 60
+LTD VFW +I PF + Y LSFL VCMHSLNAVFL+GDT+LN LRFP FRI YF LW+
Sbjct: 198 VLTDIVFWAIIYPF--TKGYKLSFLDVCMHSLNAVFLLGDTSLNSLRFPLFRIAYFVLWS 255
Query: 61 ATYLIFQWIVHACINLWWPYPFLDLSSSYAPLWYFAVALLHIPCYGIFALVMKLKHYV 118
++ +QWI+HA NLWWPY FLDLSS YAPLWY VA++HIPC+ +FALV+KLK+Y+
Sbjct: 256 CIFVAYQWIIHAVKNLWWPYQFLDLSSPYAPLWYLGVAVMHIPCFAVFALVIKLKNYL 313
>AT1G10660.2 | Symbols: | unknown protein; LOCATED IN: endomembrane
system; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G62960.1);
Has 35333 Blast hits to 34131 proteins in 2444 species:
Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi -
991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610
(source: NCBI BLink). | chr1:3533009-3534781 FORWARD
LENGTH=320
Length = 320
Score = 166 bits (419), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 78/118 (66%), Positives = 95/118 (80%), Gaps = 2/118 (1%)
Query: 1 MLTDCVFWFVIVPFLTNRDYNLSFLTVCMHSLNAVFLIGDTALNCLRFPWFRIGYFCLWT 60
+LTD VFW +I PF + Y LSFL VCMHSLNAVFL+GDT+LN LRFP FRI YF LW+
Sbjct: 198 VLTDIVFWAIIYPF--TKGYKLSFLDVCMHSLNAVFLLGDTSLNSLRFPLFRIAYFVLWS 255
Query: 61 ATYLIFQWIVHACINLWWPYPFLDLSSSYAPLWYFAVALLHIPCYGIFALVMKLKHYV 118
++ +QWI+HA NLWWPY FLDLSS YAPLWY VA++HIPC+ +FALV+KLK+Y+
Sbjct: 256 CIFVAYQWIIHAVKNLWWPYQFLDLSSPYAPLWYLGVAVMHIPCFAVFALVIKLKNYL 313
>AT3G27770.2 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G62960.1); Has 150 Blast hits to 150 proteins
in 21 species: Archae - 0; Bacteria - 0; Metazoa - 13;
Fungi - 0; Plants - 133; Viruses - 0; Other Eukaryotes -
4 (source: NCBI BLink). | chr3:10285818-10287461 REVERSE
LENGTH=272
Length = 272
Score = 137 bits (346), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 64/120 (53%), Positives = 91/120 (75%)
Query: 1 MLTDCVFWFVIVPFLTNRDYNLSFLTVCMHSLNAVFLIGDTALNCLRFPWFRIGYFCLWT 60
+LTD ++W VI PFL+ +DY +SF+TV +H+ N V L+ DT LN L+FP FR YF LWT
Sbjct: 153 VLTDSIYWTVIFPFLSLQDYEMSFMTVNLHTSNLVLLLIDTFLNRLKFPLFRFSYFILWT 212
Query: 61 ATYLIFQWIVHACINLWWPYPFLDLSSSYAPLWYFAVALLHIPCYGIFALVMKLKHYVFT 120
+++FQWI+H I++ WPYPFL+LS AP+WY VALLH+P YG+FAL++K+K+ + +
Sbjct: 213 GCFVLFQWILHMFISVGWPYPFLNLSLDMAPVWYLLVALLHLPSYGLFALIVKIKYKLIS 272
>AT3G27770.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G62960.1);
Has 158 Blast hits to 157 proteins in 21 species: Archae
- 0; Bacteria - 0; Metazoa - 13; Fungi - 0; Plants -
141; Viruses - 0; Other Eukaryotes - 4 (source: NCBI
BLink). | chr3:10285818-10287474 REVERSE LENGTH=315
Length = 315
Score = 137 bits (345), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 64/120 (53%), Positives = 91/120 (75%)
Query: 1 MLTDCVFWFVIVPFLTNRDYNLSFLTVCMHSLNAVFLIGDTALNCLRFPWFRIGYFCLWT 60
+LTD ++W VI PFL+ +DY +SF+TV +H+ N V L+ DT LN L+FP FR YF LWT
Sbjct: 196 VLTDSIYWTVIFPFLSLQDYEMSFMTVNLHTSNLVLLLIDTFLNRLKFPLFRFSYFILWT 255
Query: 61 ATYLIFQWIVHACINLWWPYPFLDLSSSYAPLWYFAVALLHIPCYGIFALVMKLKHYVFT 120
+++FQWI+H I++ WPYPFL+LS AP+WY VALLH+P YG+FAL++K+K+ + +
Sbjct: 256 GCFVLFQWILHMFISVGWPYPFLNLSLDMAPVWYLLVALLHLPSYGLFALIVKIKYKLIS 315
>AT2G47115.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT1G10660.1); Has 35333 Blast hits
to 34131 proteins in 2444 species: Archae - 798;
Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants -
531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI
BLink). | chr2:19345376-19346864 REVERSE LENGTH=300
Length = 300
Score = 137 bits (345), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/126 (54%), Positives = 93/126 (73%)
Query: 1 MLTDCVFWFVIVPFLTNRDYNLSFLTVCMHSLNAVFLIGDTALNCLRFPWFRIGYFCLWT 60
+LTD VFW VIVPFL+ + L+ LT+CMH+ NA FL+ +T LN L FPWFR+GYF LW+
Sbjct: 172 VLTDIVFWLVIVPFLSTTRFGLNTLTICMHTANAGFLLLETLLNSLPFPWFRMGYFVLWS 231
Query: 61 ATYLIFQWIVHACINLWWPYPFLDLSSSYAPLWYFAVALLHIPCYGIFALVMKLKHYVFT 120
Y+IFQWI+HAC WWPYPFL+L +AP+WY +A++HIPCYG +A ++K K+ F
Sbjct: 232 CLYVIFQWIIHACGFTWWPYPFLELDKPWAPIWYLCMAIVHIPCYGAYAAIVKAKNSCFP 291
Query: 121 TWCPDS 126
P++
Sbjct: 292 YLFPNA 297
>AT1G70505.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G10660.1); Has 141 Blast hits to 140 proteins
in 16 species: Archae - 0; Bacteria - 0; Metazoa - 4;
Fungi - 0; Plants - 135; Viruses - 0; Other Eukaryotes -
2 (source: NCBI BLink). | chr1:26570647-26572463 FORWARD
LENGTH=358
Length = 358
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 38/48 (79%)
Query: 1 MLTDCVFWFVIVPFLTNRDYNLSFLTVCMHSLNAVFLIGDTALNCLRF 48
+LTD VFWF+I PFLT +D+NL F V MHS+NA+FL+G+T LN L F
Sbjct: 226 LLTDGVFWFIIYPFLTAKDFNLDFFIVIMHSVNAIFLLGETFLNSLGF 273