Miyakogusa Predicted Gene

Lj1g3v0330960.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0330960.1 Non Chatacterized Hit- tr|I0YKS0|I0YKS0_9CHLO
Uncharacterized protein OS=Coccomyxa subellipsoidea
C-,45.45,1e-17,SUBFAMILY NOT NAMED,NULL; WILMS' TUMOR 1-ASSOCIATING
PROTEIN,NULL; coiled-coil,NULL; seg,NULL,CUFF.25794.1
         (342 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G54170.1 | Symbols: ATFIP37, FIP37 | FKBP12 interacting prote...   332   2e-91

>AT3G54170.1 | Symbols: ATFIP37, FIP37 | FKBP12 interacting protein
           37 | chr3:20056848-20059396 FORWARD LENGTH=330
          Length = 330

 Score =  332 bits (852), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 163/237 (68%), Positives = 186/237 (78%)

Query: 56  GVTTGMILSLRESLQSCKDTLATCQNELESAKSEIQGWHSSIQNESVVPTGTTPEPKMLI 115
           GV TGMILSLR SL++CKD LA+CQNELESAK+EIQ W S+ QNES VP G +PEP+ LI
Sbjct: 48  GVRTGMILSLRGSLKNCKDDLASCQNELESAKTEIQKWKSAFQNESFVPAGKSPEPRFLI 107

Query: 116 KYLQELKSSEVSFXXXXXXXXXXXSAFIVTFAKREQEIAELKSAVRDLKAQLKPPSMQAR 175
            Y+Q LKSSE S            ++ IV +AKREQE+AELKSAVRDLK+QLKP SMQAR
Sbjct: 108 DYIQNLKSSEKSLKEQLEIAKRKEASCIVQYAKREQEMAELKSAVRDLKSQLKPASMQAR 167

Query: 176 RLLLDPAVHEEFRRXXXXXXXXXXXXXXXQDNIAAVSFTPQSKMGKMLMAKCRTLQEENE 235
           RLLLDPA+HEEF R               QDNIAAV+FTPQSK GKMLMAKCRTLQEENE
Sbjct: 168 RLLLDPAIHEEFSRLKNLVEEKDKKIKELQDNIAAVTFTPQSKNGKMLMAKCRTLQEENE 227

Query: 236 EIGNQASEGKIHELTMKLALQKSQCAQFRSQFEGLQKHMEGLTNDVERSNEMILMLQ 292
           EIG+QA+EGKIHEL +KLA+QKSQ A+ RSQFEGL KHME LTNDVERSNE +++LQ
Sbjct: 228 EIGHQAAEGKIHELAIKLAMQKSQNAELRSQFEGLYKHMEELTNDVERSNETVIILQ 284