Miyakogusa Predicted Gene
- Lj1g3v0330950.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v0330950.1 Non Chatacterized Hit- tr|H2B2I1|H2B2I1_BRASY
Uncharacterized protein OS=Brachypodium sylvaticum
GN=,49,2e-16,seg,NULL; C2H2-TYPE ZN FINGER-CONTAINING PROTEIN,NULL;
RNA-BINDING PROTEIN,NULL; G-patch,G-patch dom,CUFF.25792.1
(508 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G34140.3 | Symbols: | D111/G-patch domain-containing protein... 361 e-100
AT4G34140.1 | Symbols: | D111/G-patch domain-containing protein... 343 2e-94
AT4G34140.2 | Symbols: | D111/G-patch domain-containing protein... 342 5e-94
AT3G52120.1 | Symbols: | SWAP (Suppressor-of-White-APricot)/sur... 51 2e-06
AT3G54230.2 | Symbols: SUA | suppressor of abi3-5 | chr3:2007387... 50 3e-06
AT3G54230.1 | Symbols: SUA | suppressor of abi3-5 | chr3:2007387... 50 4e-06
>AT4G34140.3 | Symbols: | D111/G-patch domain-containing protein |
chr4:16350942-16354022 FORWARD LENGTH=501
Length = 501
Score = 361 bits (926), Expect = e-100, Method: Compositional matrix adjust.
Identities = 225/537 (41%), Positives = 292/537 (54%), Gaps = 99/537 (18%)
Query: 15 FVWDENSQLYFHASTGFYHDPNAGWYYSSSDGVYYKFEDGKYVPLGSNEDDCEETVQCKE 74
+VWD ++QLY H S+GFYHDPNAGWYY S DG YYK E+G+YVPL +E
Sbjct: 17 YVWDSDTQLYIHHSSGFYHDPNAGWYYCSKDGRYYKHENGEYVPLEYDESSV-------- 68
Query: 75 TTPENPQQICGNNNGDSTSFLEREFDTGQHTGTLVDEAFDDDAMNSMSSP--------AC 126
N GD ++ E D G+ E ++ S+S+P C
Sbjct: 69 -----------NPPGDIVTYEPSEDDLGRKCAFSQAENVENGCEVSLSNPGETPSESTGC 117
Query: 127 EN-----XXXXXSEWLEDTLIELYLSGYN-NTAVSAADTAAVPFETDSEYYSYHNTDEVE 180
N S W+EDTLIELYL GYN + + S+ + A+ D + S + D+ E
Sbjct: 118 PNDQEPEHRQRPSSWVEDTLIELYLDGYNQHPSASSYERASGENNQDCQMLSANGDDDAE 177
Query: 181 REWIPGPVDDNVIADNEGTVDESVAYSDTYELEEGEWIP----DSEDENGIADRSPIDEG 236
ELEEGEWIP D ++EN + +P E
Sbjct: 178 ------------------------------ELEEGEWIPEEDFDPQEEN-FGEAAPSSE- 205
Query: 237 ILLDEENWRAQYGQVTESGNDLVSEFSIVDLWDWEMVRGSKKDGKDNAARLVGRLVKQSA 296
EE W AQYGQV ES + E VDLWDW++V +++ + ARLVGRLV+QSA
Sbjct: 206 ----EERWLAQYGQVIESPGKTLPEIPSVDLWDWKLVCETREADNEQVARLVGRLVRQSA 261
Query: 297 KPHPSIRSGRGKLRSAPICEVHLDLVRVKTGQVYKLRNPSASYVASISTYNSANPTKDWD 356
HPS+ SG L++APICE L LVRV+TGQVYKLRNPSA Y+AS+S Y+++NPTKDW+
Sbjct: 262 NLHPSVVSGGTLLKTAPICEARLHLVRVRTGQVYKLRNPSAKYLASLSVYDASNPTKDWE 321
Query: 357 FPQLSS--NRNITRFSKSSEGTGTASTSDETPVEKDL------------------SVLST 396
FP +S+ T+ AS P E D+ L+
Sbjct: 322 FPDISTEWQNPDTKRKAKKGKPKRASKLTVKPSEVDMIEEQETKREAKKVKPKTDCKLTV 381
Query: 397 QLSASKQMIKQQ----YRDRAAERRILHGGFGVDPGQKNHAVRDDT--TSSPDDYCPEEA 450
+ MI++Q YRDRAAERR LHGG+GV PGQK V +T S PD E+
Sbjct: 382 KPRDEVNMIEEQRSCSYRDRAAERRNLHGGYGVGPGQKGTTVDHNTDEHSVPDTGSEEDT 441
Query: 451 ASEALQMSFGAGSYARKLLENMGWKEGEGLGNSTKGLVEPIQPVGNIGSAGLGWPRR 507
+EAL++SFG+GSYAR+++ NMGWKEGE LG +TKGLVEPIQ VGN G+ GLG+P+R
Sbjct: 442 VAEALELSFGSGSYARRIMGNMGWKEGETLGKNTKGLVEPIQAVGNTGNVGLGFPQR 498
>AT4G34140.1 | Symbols: | D111/G-patch domain-containing protein |
chr4:16350942-16354022 FORWARD LENGTH=530
Length = 530
Score = 343 bits (880), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 224/566 (39%), Positives = 291/566 (51%), Gaps = 128/566 (22%)
Query: 15 FVWDENSQLYFHASTGFYHDPNAGWYYSSSDGVYYKFEDGKYVPLGSNEDDCEETVQCKE 74
+VWD ++QLY H S+GFYHDPNAGWYY S DG YYK E+G+YVPL +E
Sbjct: 17 YVWDSDTQLYIHHSSGFYHDPNAGWYYCSKDGRYYKHENGEYVPLEYDESSV-------- 68
Query: 75 TTPENPQQICGNNNGDSTSFLEREFDTGQHTGTLVDEAFDDDAMNSMSSPA--------C 126
N GD ++ E D G+ E ++ S+S+P C
Sbjct: 69 -----------NPPGDIVTYEPSEDDLGRKCAFSQAENVENGCEVSLSNPGETPSESTGC 117
Query: 127 EN-----XXXXXSEWLEDTLIELYLSGYN-NTAVSAADTAAVPFETDSEYYSYHNTDEVE 180
N S W+EDTLIELYL GYN + + S+ + A+ D + S + D+ E
Sbjct: 118 PNDQEPEHRQRPSSWVEDTLIELYLDGYNQHPSASSYERASGENNQDCQMLSANGDDDAE 177
Query: 181 REWIPGPVDDNVIADNEGTVDESVAYSDTYELEEGEWIP----DSEDENGIADRSPIDEG 236
ELEEGEWIP D ++EN + +P E
Sbjct: 178 ------------------------------ELEEGEWIPEEDFDPQEEN-FGEAAPSSE- 205
Query: 237 ILLDEENWRAQYGQVTESGNDLVSEFSIVDLWDWEMVRGSKKDGKDNAARLVGRLVKQSA 296
EE W AQYGQV ES + E VDLWDW++V +++ + ARLVGRLV+QSA
Sbjct: 206 ----EERWLAQYGQVIESPGKTLPEIPSVDLWDWKLVCETREADNEQVARLVGRLVRQSA 261
Query: 297 KPHPSIRSGRGKLRSAPICEVHLDLVRVKTGQVYKLRNPSASYVASISTYNSANPTKD-- 354
HPS+ SG L++APICE L LVRV+TGQVYKLRNPSA Y+AS+S Y+++NPTKD
Sbjct: 262 NLHPSVVSGGTLLKTAPICEARLHLVRVRTGQVYKLRNPSAKYLASLSVYDASNPTKDWE 321
Query: 355 -------WDFPQLSSNRNITRFSKSSEGTGTASTSDET---------------------- 385
W P + ++S+ T S D
Sbjct: 322 FPDISTEWQNPDTKRKAKKGKPKRASKLTVKPSEVDMIEEKTKRKAKKVKPKADCKLTVK 381
Query: 386 PVEKDL------------------SVLSTQLSASKQMIKQQ----YRDRAAERRILHGGF 423
P E D+ L+ + MI++Q YRDRAAERR LHGG+
Sbjct: 382 PCEVDMFEEQETKREAKKVKPKTDCKLTVKPRDEVNMIEEQRSCSYRDRAAERRNLHGGY 441
Query: 424 GVDPGQKNHAVRDDT--TSSPDDYCPEEAASEALQMSFGAGSYARKLLENMGWKEGEGLG 481
GV PGQK V +T S PD E+ +EAL++SFG+GSYAR+++ NMGWKEGE LG
Sbjct: 442 GVGPGQKGTTVDHNTDEHSVPDTGSEEDTVAEALELSFGSGSYARRIMGNMGWKEGETLG 501
Query: 482 NSTKGLVEPIQPVGNIGSAGLGWPRR 507
+TKGLVEPIQ VGN G+ GLG+P+R
Sbjct: 502 KNTKGLVEPIQAVGNTGNVGLGFPQR 527
>AT4G34140.2 | Symbols: | D111/G-patch domain-containing protein |
chr4:16350942-16354022 FORWARD LENGTH=530
Length = 530
Score = 342 bits (876), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 223/566 (39%), Positives = 291/566 (51%), Gaps = 128/566 (22%)
Query: 15 FVWDENSQLYFHASTGFYHDPNAGWYYSSSDGVYYKFEDGKYVPLGSNEDDCEETVQCKE 74
+VWD ++QLY H S+GFYHDPNAGWYY S DG YYK E+G+YVPL +E
Sbjct: 17 YVWDSDTQLYIHHSSGFYHDPNAGWYYCSKDGRYYKHENGEYVPLEYDESSV-------- 68
Query: 75 TTPENPQQICGNNNGDSTSFLEREFDTGQHTGTLVDEAFDDDAMNSMSSPA--------C 126
N GD ++ E D G+ E ++ S+S+P C
Sbjct: 69 -----------NPPGDIVTYEPSEDDLGRKCAFSQAENVENGCEVSLSNPGETPSESTGC 117
Query: 127 EN-----XXXXXSEWLEDTLIELYLSGYN-NTAVSAADTAAVPFETDSEYYSYHNTDEVE 180
N S W+EDTLIELYL GYN + + S+ + A+ D + S + D+ E
Sbjct: 118 PNDQEPEHRQRPSSWVEDTLIELYLDGYNQHPSASSYERASGENNQDCQMLSANGDDDAE 177
Query: 181 REWIPGPVDDNVIADNEGTVDESVAYSDTYELEEGEWIP----DSEDENGIADRSPIDEG 236
ELEEGEWIP D ++EN + +P E
Sbjct: 178 ------------------------------ELEEGEWIPEEDFDPQEEN-FGEAAPSSE- 205
Query: 237 ILLDEENWRAQYGQVTESGNDLVSEFSIVDLWDWEMVRGSKKDGKDNAARLVGRLVKQSA 296
EE W AQYGQV ES + E VDLWDW++V +++ + ARLVGRLV+QSA
Sbjct: 206 ----EERWLAQYGQVIESPGKTLPEIPSVDLWDWKLVCETREADNEQVARLVGRLVRQSA 261
Query: 297 KPHPSIRSGRGKLRSAPICEVHLDLVRVKTGQVYKLRNPSASYVASISTYNSANPTKD-- 354
HPS+ SG L++APICE L LVRV+TGQVYKLRNPSA Y+AS+S Y+++NPTKD
Sbjct: 262 NLHPSVVSGGTLLKTAPICEARLHLVRVRTGQVYKLRNPSAKYLASLSVYDASNPTKDWE 321
Query: 355 -------WDFPQLSSNRNITRFSKSSEGTGTASTSDET---------------------- 385
W P + ++S+ T S D
Sbjct: 322 FPDISTEWQNPDTKRKAKKGKPKRASKLTVKPSEVDMIEEQKTKRKAKKVKPKADCKLTV 381
Query: 386 -PVEKDL------------------SVLSTQLSASKQMIKQQ---YRDRAAERRILHGGF 423
P E D+ L+ + MI+++ YRDRAAERR LHGG+
Sbjct: 382 KPCEVDMFEEQETKREAKKVKPKTDCKLTVKPRDEVNMIEERSCSYRDRAAERRNLHGGY 441
Query: 424 GVDPGQKNHAVRDDT--TSSPDDYCPEEAASEALQMSFGAGSYARKLLENMGWKEGEGLG 481
GV PGQK V +T S PD E+ +EAL++SFG+GSYAR+++ NMGWKEGE LG
Sbjct: 442 GVGPGQKGTTVDHNTDEHSVPDTGSEEDTVAEALELSFGSGSYARRIMGNMGWKEGETLG 501
Query: 482 NSTKGLVEPIQPVGNIGSAGLGWPRR 507
+TKGLVEPIQ VGN G+ GLG+P+R
Sbjct: 502 KNTKGLVEPIQAVGNTGNVGLGFPQR 527
>AT3G52120.1 | Symbols: | SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein / D111/G-patch
domain-containing protein | chr3:19329243-19331738
FORWARD LENGTH=443
Length = 443
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 10/88 (11%)
Query: 425 VDPGQKNHAV--------RDDTTSSPDDYCPEEAASEALQMS-FGAGSYARKLLENMGWK 475
DPG++ H + D S +D ++A EA + + A + KLL MGWK
Sbjct: 315 TDPGKRGHHMGDYIPLEELDKFLSKCNDAAAQKATKEAAEKAKIQADNVGHKLLSKMGWK 374
Query: 476 EGEGLGNSTKGLVEPIQPVGNIGSAGLG 503
EGEG+G+S KG+ +PI G++ + LG
Sbjct: 375 EGEGIGSSRKGMADPIM-AGDVKTNNLG 401
>AT3G54230.2 | Symbols: SUA | suppressor of abi3-5 |
chr3:20073872-20080142 FORWARD LENGTH=1008
Length = 1008
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 34/48 (70%), Gaps = 2/48 (4%)
Query: 14 GFVWDENSQLYFHASTGFYHDPNAGWYYSSSDGVYYKF--EDGKYVPL 59
G+VWDE S Y+ A++G+Y+D N+G YY S+ G++Y + + +YVP
Sbjct: 584 GYVWDEASGYYYDAASGYYYDGNSGLYYDSNSGLWYSYDQQTQQYVPC 631
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 51/127 (40%), Gaps = 32/127 (25%)
Query: 402 KQMIKQQYRDRAAERRILHGG---------------FGVD----------PGQKNHAVRD 436
++ + YRDRAAERR L+G G+ PG +
Sbjct: 852 REQPQTSYRDRAAERRNLYGSSTSSGNDVIDSSEDLMGLRKGSSDPTPFPPGVGGRGITT 911
Query: 437 DTTSSPDDYCPEEAASEALQMSFGAGSYARKLLENMGWKEGEGLGNSTKGLVEPIQPVGN 496
T S D EE A + + ++L NMGW EG GLG G+ EP+Q G
Sbjct: 912 STEVSSFDVITEERAIDESNV-------GNRMLRNMGWHEGSGLGKDGSGMKEPVQAQGV 964
Query: 497 IGSAGLG 503
AGLG
Sbjct: 965 DRRAGLG 971
>AT3G54230.1 | Symbols: SUA | suppressor of abi3-5 |
chr3:20073872-20080142 FORWARD LENGTH=1007
Length = 1007
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 34/48 (70%), Gaps = 2/48 (4%)
Query: 14 GFVWDENSQLYFHASTGFYHDPNAGWYYSSSDGVYYKF--EDGKYVPL 59
G+VWDE S Y+ A++G+Y+D N+G YY S+ G++Y + + +YVP
Sbjct: 583 GYVWDEASGYYYDAASGYYYDGNSGLYYDSNSGLWYSYDQQTQQYVPC 630
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 51/127 (40%), Gaps = 32/127 (25%)
Query: 402 KQMIKQQYRDRAAERRILHGG---------------FGVD----------PGQKNHAVRD 436
++ + YRDRAAERR L+G G+ PG +
Sbjct: 851 REQPQTSYRDRAAERRNLYGSSTSSGNDVIDSSEDLMGLRKGSSDPTPFPPGVGGRGITT 910
Query: 437 DTTSSPDDYCPEEAASEALQMSFGAGSYARKLLENMGWKEGEGLGNSTKGLVEPIQPVGN 496
T S D EE A + + ++L NMGW EG GLG G+ EP+Q G
Sbjct: 911 STEVSSFDVITEERAIDESNV-------GNRMLRNMGWHEGSGLGKDGSGMKEPVQAQGV 963
Query: 497 IGSAGLG 503
AGLG
Sbjct: 964 DRRAGLG 970