Miyakogusa Predicted Gene
- Lj1g3v0318630.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v0318630.1 tr|G7J4T5|G7J4T5_MEDTR Histone deacetylase
OS=Medicago truncatula GN=MTR_3g077160 PE=3
SV=1,81.9,0,Arginase/deacetylase,NULL; Hist_deacetyl,Histone
deacetylase domain; HISTONE DEACETYLASE,NULL; HISTO,CUFF.25565.1
(465 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G63110.1 | Symbols: HDA6, AXE1, ATHDA6, RTS1, RPD3B, SIL1 | h... 672 0.0
AT4G38130.1 | Symbols: HD1, ATHD1, HDA1, RPD3A, HDA19, ATHDA19 |... 588 e-168
AT4G38130.2 | Symbols: HD1, ATHD1, HDA1, RPD3A, HDA19 | histone ... 587 e-168
AT5G35600.1 | Symbols: HDA7 | histone deacetylase7 | chr5:137701... 483 e-136
AT3G44680.1 | Symbols: HDA9, HDA09 | histone deacetylase 9 | chr... 467 e-132
AT1G08460.1 | Symbols: HDA08, HDA8, ATHDA8 | histone deacetylase... 108 6e-24
AT3G44490.1 | Symbols: hda17 | histone deacetylase 17 | chr3:160... 108 8e-24
AT3G18520.2 | Symbols: HDA15, ATHDA15 | histone deacetylase 15 |... 103 2e-22
AT5G61060.1 | Symbols: HDA05, HDA5, ATHDA5 | histone deacetylase... 103 2e-22
AT3G18520.1 | Symbols: HDA15, ATHDA15 | histone deacetylase 15 |... 103 3e-22
AT5G61060.2 | Symbols: HDA05 | histone deacetylase 5 | chr5:2456... 100 3e-21
AT5G61070.1 | Symbols: HDA18, ATHDA18 | histone deacetylase of t... 94 2e-19
AT4G33470.1 | Symbols: hda14, ATHDA14 | histone deacetylase 14 |... 87 3e-17
AT3G44660.1 | Symbols: hda10 | histone deacetylase 10 | chr3:162... 82 1e-15
>AT5G63110.1 | Symbols: HDA6, AXE1, ATHDA6, RTS1, RPD3B, SIL1 |
histone deacetylase 6 | chr5:25315834-25318227 REVERSE
LENGTH=471
Length = 471
Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/472 (70%), Positives = 381/472 (80%), Gaps = 11/472 (2%)
Query: 1 MAESDGGASLPSVGSDAVKRSVTYFYEPQIGDYYYGQGHPMKPHRIRMAHELIINYSLFR 60
M + G SLPS G D KR V+YFYEP IGDYYYGQGHPMKPHRIRMAH LII+Y L R
Sbjct: 1 MEADESGISLPS-GPDGRKRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHSLIIHYHLHR 59
Query: 61 RMQINRPYPAAVEDICRFHSDDYVDFLASVSPEILSEPTHSHYRQLKRYNVGEDCPVFDG 120
R++I+RP A DI RFHS +YVDFLASVSPE + +P+ + R L+R+NVGEDCPVFDG
Sbjct: 60 RLEISRPSLADASDIGRFHSPEYVDFLASVSPESMGDPSAA--RNLRRFNVGEDCPVFDG 117
Query: 121 LFDFCQASAGGSIGAAVTLNHSLADIAINWAGGLHHAKKAEASGFCYVNDIVLGILELLK 180
LFDFC+ASAGGSIGAAV LN ADIAINW GGLHHAKK+EASGFCYVNDIVLGILELLK
Sbjct: 118 LFDFCRASAGGSIGAAVKLNRQDADIAINWGGGLHHAKKSEASGFCYVNDIVLGILELLK 177
Query: 181 VHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGNFFPGTGHIKDTGLGPGKNYAIN 240
+ +RVLY+DIDVHHGDGVEEAFYTTDRVMTVSFHKFG+FFPGTGHI+D G GK YA+N
Sbjct: 178 MFKRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIRDVGAEKGKYYALN 237
Query: 241 VPLDDGMDDVNFRDLFRPIIRKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCL 300
VPL+DGMDD +FR LFRP+I+KVMEVYQP+AVVLQCGADSLSGDRLGCFNLSVKGHADCL
Sbjct: 238 VPLNDGMDDESFRSLFRPLIQKVMEVYQPEAVVLQCGADSLSGDRLGCFNLSVKGHADCL 297
Query: 301 RFLRSYNVPLMLLGGGGYTVRSVARCWCYETAVAVGVELSNKLPFNQYYEFFGPEYTLHV 360
RFLRSYNVPLM+LGGGGYT+R+VARCWCYETAVAVGVE NKLP+N+Y+E+FGP+YTLHV
Sbjct: 298 RFLRSYNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYFEYFGPDYTLHV 357
Query: 361 SPRSMANLNTPQDLELIRNLLLEQISRLPHAPSIPFQTTPSTIEVPXXXXXDMDTRPKRR 420
P M NLNTP+D+E IRN LLEQ+S L HAPS+ FQ TP V DM+TRPK R
Sbjct: 358 DPSPMENLNTPKDMERIRNTLLEQLSGLIHAPSVQFQHTPPVNRVLDEPEDDMETRPKPR 417
Query: 421 IWSSG---EVDSDYEDEAP----SPPNSHSTSNIRHLADEMEDDDSDATPSP 465
IWS E DSD +D+ P S +T DEM+DD+ + +P
Sbjct: 418 IWSGTATYESDSD-DDDKPLHGYSCRGGATTDRDSTGEDEMDDDNPEPDVNP 468
>AT4G38130.1 | Symbols: HD1, ATHD1, HDA1, RPD3A, HDA19, ATHDA19 |
histone deacetylase 1 | chr4:17896493-17899057 REVERSE
LENGTH=501
Length = 501
Score = 588 bits (1516), Expect = e-168, Method: Compositional matrix adjust.
Identities = 288/456 (63%), Positives = 349/456 (76%), Gaps = 14/456 (3%)
Query: 6 GGASLPSVGSDAVKRSVTYFYEPQIGDYYYGQGHPMKPHRIRMAHELIINYSLFRRMQIN 65
GG SL S G D VKR V YFY+P++G+YYYGQGHPMKPHRIRM H L+ +Y L + MQ+
Sbjct: 4 GGNSLAS-GPDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVL 62
Query: 66 RPYPAAVEDICRFHSDDYVDFLASVSPEILSEPTHSHYRQLKRYNVGEDCPVFDGLFDFC 125
+P+PA D+CRFH+DDYV FL S++PE + RQLKR+NVGEDCPVFDGL+ FC
Sbjct: 63 KPFPARDRDLCRFHADDYVSFLRSITPETQQD----QIRQLKRFNVGEDCPVFDGLYSFC 118
Query: 126 QASAGGSIGAAVTLNHSLADIAINWAGGLHHAKKAEASGFCYVNDIVLGILELLKVHRRV 185
Q AGGS+G +V LNH L DIAINWAGGLHHAKK EASGFCYVNDIVL ILELLK H RV
Sbjct: 119 QTYAGGSVGGSVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERV 178
Query: 186 LYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGNFFPGTGHIKDTGLGPGKNYAINVPLDD 245
LYVDID+HHGDGVEEAFY TDRVMTVSFHKFG++FPGTGHI+D G G GK Y++NVPLDD
Sbjct: 179 LYVDIDIHHGDGVEEAFYATDRVMTVSFHKFGDYFPGTGHIQDIGYGSGKYYSLNVPLDD 238
Query: 246 GMDDVNFRDLFRPIIRKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRS 305
G+DD ++ LF+PI+ KVME+++P AVVLQCGADSLSGDRLGCFNLS+KGHA+C++F+RS
Sbjct: 239 GIDDESYHLLFKPIMGKVMEIFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRS 298
Query: 306 YNVPLMLLGGGGYTVRSVARCWCYETAVAVGVELSNKLPFNQYYEFFGPEYTLHVSPRSM 365
+NVPL+LLGGGGYT+R+VARCWCYET VA+GVE+ +K+P ++YYE+FGP+YTLHV+P +M
Sbjct: 299 FNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVEDKMPEHEYYEYFGPDYTLHVAPSNM 358
Query: 366 ANLNTPQDLELIRNLLLEQISRLPHAPSIPFQTTPSTIEVPXXXXXDMDTRPKRRIWSSG 425
N N+ Q LE IRN LL +S+L HAPS+PFQ P E P D D + W
Sbjct: 359 ENKNSRQMLEEIRNDLLHNLSKLQHAPSVPFQERPPDTETP---EVDEDQEDGDKRWDPD 415
Query: 426 EVDSDYEDEAPSPPNSHSTSNIRHLADEMEDDDSDA 461
+D P P S ++ A E + D D
Sbjct: 416 SDMDVDDDRKPIP------SRVKREAVEPDTKDKDG 445
>AT4G38130.2 | Symbols: HD1, ATHD1, HDA1, RPD3A, HDA19 | histone
deacetylase 1 | chr4:17896663-17899057 REVERSE
LENGTH=469
Length = 469
Score = 587 bits (1514), Expect = e-168, Method: Compositional matrix adjust.
Identities = 288/456 (63%), Positives = 349/456 (76%), Gaps = 14/456 (3%)
Query: 6 GGASLPSVGSDAVKRSVTYFYEPQIGDYYYGQGHPMKPHRIRMAHELIINYSLFRRMQIN 65
GG SL S G D VKR V YFY+P++G+YYYGQGHPMKPHRIRM H L+ +Y L + MQ+
Sbjct: 4 GGNSLAS-GPDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVL 62
Query: 66 RPYPAAVEDICRFHSDDYVDFLASVSPEILSEPTHSHYRQLKRYNVGEDCPVFDGLFDFC 125
+P+PA D+CRFH+DDYV FL S++PE + RQLKR+NVGEDCPVFDGL+ FC
Sbjct: 63 KPFPARDRDLCRFHADDYVSFLRSITPETQQD----QIRQLKRFNVGEDCPVFDGLYSFC 118
Query: 126 QASAGGSIGAAVTLNHSLADIAINWAGGLHHAKKAEASGFCYVNDIVLGILELLKVHRRV 185
Q AGGS+G +V LNH L DIAINWAGGLHHAKK EASGFCYVNDIVL ILELLK H RV
Sbjct: 119 QTYAGGSVGGSVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERV 178
Query: 186 LYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGNFFPGTGHIKDTGLGPGKNYAINVPLDD 245
LYVDID+HHGDGVEEAFY TDRVMTVSFHKFG++FPGTGHI+D G G GK Y++NVPLDD
Sbjct: 179 LYVDIDIHHGDGVEEAFYATDRVMTVSFHKFGDYFPGTGHIQDIGYGSGKYYSLNVPLDD 238
Query: 246 GMDDVNFRDLFRPIIRKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRS 305
G+DD ++ LF+PI+ KVME+++P AVVLQCGADSLSGDRLGCFNLS+KGHA+C++F+RS
Sbjct: 239 GIDDESYHLLFKPIMGKVMEIFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRS 298
Query: 306 YNVPLMLLGGGGYTVRSVARCWCYETAVAVGVELSNKLPFNQYYEFFGPEYTLHVSPRSM 365
+NVPL+LLGGGGYT+R+VARCWCYET VA+GVE+ +K+P ++YYE+FGP+YTLHV+P +M
Sbjct: 299 FNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVEDKMPEHEYYEYFGPDYTLHVAPSNM 358
Query: 366 ANLNTPQDLELIRNLLLEQISRLPHAPSIPFQTTPSTIEVPXXXXXDMDTRPKRRIWSSG 425
N N+ Q LE IRN LL +S+L HAPS+PFQ P E P D D + W
Sbjct: 359 ENKNSRQMLEEIRNDLLHNLSKLQHAPSVPFQERPPDTETP---EVDEDQEDGDKRWDPD 415
Query: 426 EVDSDYEDEAPSPPNSHSTSNIRHLADEMEDDDSDA 461
+D P P S ++ A E + D D
Sbjct: 416 SDMDVDDDRKPIP------SRVKREAVEPDTKDKDG 445
>AT5G35600.1 | Symbols: HDA7 | histone deacetylase7 |
chr5:13770121-13771712 REVERSE LENGTH=409
Length = 409
Score = 483 bits (1242), Expect = e-136, Method: Compositional matrix adjust.
Identities = 234/409 (57%), Positives = 294/409 (71%), Gaps = 6/409 (1%)
Query: 15 SDAVKRSVTYFYEPQIGDYYYGQGHPMKPHRIRMAHELIINYSLFRRMQINRPYPAAVED 74
+D KR V+YFYEP IGDYYYG P KP RIR+ H LI++Y+L R M+IN P A D
Sbjct: 5 ADGGKRRVSYFYEPMIGDYYYGVNQPTKPQRIRVTHNLILSYNLHRHMEINHPDLADASD 64
Query: 75 ICRFHSDDYVDFLASVSPEILSEPTHSHYRQLKRYNVGEDC--PVFDGLFDFCQASAGGS 132
+FHS +Y++FL SV+PE +++P S LKR+NV D PVF LFD+C+A AGGS
Sbjct: 65 FEKFHSLEYINFLKSVTPETVTDPHPSVSENLKRFNVDVDWDGPVFHNLFDYCRAYAGGS 124
Query: 133 IGAAVTLNHSLADIAINWAGGLHHAKKAEASGFCYVNDIVLGILELLKVHRRVLYVDIDV 192
I AA LN ADIAINWAGG+HH KK +ASGF YVND+VL ILELLK +RVLY++I
Sbjct: 125 ISAAAKLNRQEADIAINWAGGMHHVKKDKASGFGYVNDVVLAILELLKSFKRVLYIEIGF 184
Query: 193 HHGDGVEEAFYTTDRVMTVSFHKFGNFFPGTGHIKDTGLGPGKNYAINVPLDDGMDDVNF 252
HGD VEEAF TDRVMTVSFHK G+ TG I D G G G+ Y++N PL DG+DD +
Sbjct: 185 PHGDEVEEAFKDTDRVMTVSFHKVGD----TGDISDYGEGKGQYYSLNAPLKDGLDDFSL 240
Query: 253 RDLFRPIIRKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSYNVPLML 312
R LF P+I + ME+Y+P+ +VLQCGADSL+GD G FNLS+KGH DCL+++RS+NVPLM+
Sbjct: 241 RGLFIPVIHRAMEIYEPEVIVLQCGADSLAGDPFGTFNLSIKGHGDCLQYVRSFNVPLMI 300
Query: 313 LGGGGYTVRSVARCWCYETAVAVGVELSNKLPFNQYYEFFGPEYTLHVSPRSMANLNTPQ 372
LGGGGYT+ +VARCWCYETA+AVG +L N LP N Y ++F P+Y LH+ P + NLNT
Sbjct: 301 LGGGGYTLPNVARCWCYETAIAVGEQLDNDLPGNDYMKYFRPDYKLHILPTNRQNLNTRL 360
Query: 373 DLELIRNLLLEQISRLPHAPSIPFQTTPSTIEVPXXXXXDMDTRPKRRI 421
D+ +R LL Q+S + HAPS+PFQ TPS+ + DM+ R RI
Sbjct: 361 DIITMRETLLAQLSLVMHAPSVPFQDTPSSSQATEAAEVDMEKRNDPRI 409
>AT3G44680.1 | Symbols: HDA9, HDA09 | histone deacetylase 9 |
chr3:16226769-16229752 REVERSE LENGTH=426
Length = 426
Score = 467 bits (1201), Expect = e-132, Method: Compositional matrix adjust.
Identities = 219/389 (56%), Positives = 286/389 (73%), Gaps = 5/389 (1%)
Query: 19 KRSVTYFYEPQIGDYYYGQGHPMKPHRIRMAHELIINYSLFRRMQINRPYPAAVEDICRF 78
K ++YFY+ +G Y+G HPMKPHR+ M H LI+ Y L +M++ RP+ A ++ +F
Sbjct: 4 KDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLILAYGLHSKMEVYRPHKAYPIEMAQF 63
Query: 79 HSDDYVDFLASVSPEILSEPTHSHYRQLKRYNVGEDCPVFDGLFDFCQASAGGSIGAAVT 138
HS DYV+FL ++PE + ++ RYN+GEDCPVF+ LF+FCQ AGG+I AA
Sbjct: 64 HSPDYVEFLQRINPE----NQNLFPNEMARYNLGEDCPVFEDLFEFCQLYAGGTIDAARR 119
Query: 139 LNHSLADIAINWAGGLHHAKKAEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGV 198
LN+ L DIAINWAGGLHHAKK +ASGFCY+ND+VLGILELLK H RVLY+DIDVHHGDGV
Sbjct: 120 LNNKLCDIAINWAGGLHHAKKCDASGFCYINDLVLGILELLKHHPRVLYIDIDVHHGDGV 179
Query: 199 EEAFYTTDRVMTVSFHKFGN-FFPGTGHIKDTGLGPGKNYAINVPLDDGMDDVNFRDLFR 257
EEAFY TDRVMTVSFHKFG+ FFPGTG +K+ G GK YAINVPL DG+DD +F LFR
Sbjct: 180 EEAFYFTDRVMTVSFHKFGDKFFPGTGDVKEIGEREGKFYAINVPLKDGIDDSSFNRLFR 239
Query: 258 PIIRKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSYNVPLMLLGGGG 317
II KV+E+YQP A+VLQCGADSL+ DRLGCFNLS+ GHA+C++F++ +N+PL++ GGGG
Sbjct: 240 TIISKVVEIYQPGAIVLQCGADSLARDRLGCFNLSIDGHAECVKFVKKFNLPLLVTGGGG 299
Query: 318 YTVRSVARCWCYETAVAVGVELSNKLPFNQYYEFFGPEYTLHVSPRSMANLNTPQDLELI 377
YT +VARCW ET + + EL N++P N Y ++F P+++L + + NLNT + I
Sbjct: 300 YTKENVARCWTVETGILLDTELPNEIPENDYIKYFAPDFSLKIPGGHIENLNTKSYISSI 359
Query: 378 RNLLLEQISRLPHAPSIPFQTTPSTIEVP 406
+ +LE + + HAPS+ Q P +P
Sbjct: 360 KVQILENLRYIQHAPSVQMQEVPPDFYIP 388
>AT1G08460.1 | Symbols: HDA08, HDA8, ATHDA8 | histone deacetylase 8
| chr1:2672527-2674469 FORWARD LENGTH=377
Length = 377
Score = 108 bits (271), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 88/329 (26%), Positives = 142/329 (43%), Gaps = 38/329 (11%)
Query: 16 DAVKRSVTYFYEPQIGDYYYGQGHPMKPHRIRMAHELIINYSLFRRMQINRPYPAAVEDI 75
DAV+ Y+P D + HP R+R ++ + + PA V ++
Sbjct: 18 DAVEGVFDTGYDPGFLDVL--EKHPENADRVRNMLSILRRGPIAPHVNWFTGLPAIVSEL 75
Query: 76 CRFHSDDYVDFLASVSPEILSEPTHSHYRQLKRYNVGEDCPVFDGLFDFCQASAGGSIGA 135
FH+ +Y++ L GE C + G F + + A
Sbjct: 76 LMFHTSEYIEKLVEADKS------------------GERCEIAAGTFMSPGSWEAALLAA 117
Query: 136 AVTLN--HSLADIAINWAGGL-----HHAKKAEASGFCYVNDIVLGILELLKVHR--RVL 186
TL+ + D A L HH++ +A G+C++N+ L + L RV
Sbjct: 118 GTTLSAMQHILDCHGKIAYALVRPPGHHSQPTQADGYCFLNNAALAVKLALNSGSCSRVA 177
Query: 187 YVDIDVHHGDGVEEAFYTTDRVMTVSFH----KFGNFFPGTGHIKDTGLGPGKNYAINVP 242
+DIDVH+G+G E FYT+D+V+TVS H +G+ P G I + G G Y +NVP
Sbjct: 178 VIDIDVHYGNGTAEGFYTSDKVLTVSLHMNHGSWGSSHPQKGSIDELGEDVGLGYNLNVP 237
Query: 243 LDDGMDDVNFRDLFRPIIRKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRF 302
L +G D + ++ + + PD VVL G DS + D G +L++ G+ +
Sbjct: 238 LPNGTGDRGYEYAMNELVVPAVRRFGPDMVVLVVGQDSSAFDPNGRQSLTMNGYRRIGQI 297
Query: 303 LRSY-----NVPLMLLGGGGYTVRSVARC 326
+R + L+++ GGY V A C
Sbjct: 298 MRGVAEEHSHGRLLMVQEGGYHVTYAAYC 326
>AT3G44490.1 | Symbols: hda17 | histone deacetylase 17 |
chr3:16097479-16098386 FORWARD LENGTH=158
Length = 158
Score = 108 bits (270), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 74/119 (62%)
Query: 288 CFNLSVKGHADCLRFLRSYNVPLMLLGGGGYTVRSVARCWCYETAVAVGVELSNKLPFNQ 347
F++ GHA+C++F++ +N+PL++ GGGGYT +VARCW ET + + EL N++ N
Sbjct: 2 AFSMLFTGHAECVKFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEISEND 61
Query: 348 YYEFFGPEYTLHVSPRSMANLNTPQDLELIRNLLLEQISRLPHAPSIPFQTTPSTIEVP 406
Y ++F P+++L + + NLNT + I+ +LE + + HAPS+ Q P +P
Sbjct: 62 YIKYFAPDFSLKIPGGHIENLNTKSYISSIKVQILENLRYIQHAPSVQMQEVPPDFYIP 120
>AT3G18520.2 | Symbols: HDA15, ATHDA15 | histone deacetylase 15 |
chr3:6361605-6365399 FORWARD LENGTH=564
Length = 564
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 106/211 (50%), Gaps = 5/211 (2%)
Query: 155 HHAKKAEASGFC-YVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSF 213
HHA A GFC + N V ++ ++VL VD DVHHG+G +E F V+ +S
Sbjct: 276 HHAGVRHAMGFCLHNNAAVAALVAQAAGAKKVLIVDWDVHHGNGTQEIFEQNKSVLYISL 335
Query: 214 HKF--GNFFPGTGHIKDTGLGPGKNYAINVPLD-DGMDDVNFRDLFRPIIRKVMEVYQPD 270
H+ GNF+PGTG + G G+ Y +NVP G+ D ++ F+ ++ + + PD
Sbjct: 336 HRHEGGNFYPGTGAADEVGSNGGEGYCVNVPWSCGGVGDKDYIFAFQHVVLPIASAFSPD 395
Query: 271 AVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSY-NVPLMLLGGGGYTVRSVARCWCY 329
V++ G D+ GD LGC +++ G++ + L ++++ GGY +RS++
Sbjct: 396 FVIISAGFDAARGDPLGCCDVTPAGYSRMTQMLGDLCGGKMLVILEGGYNLRSISASATA 455
Query: 330 ETAVAVGVELSNKLPFNQYYEFFGPEYTLHV 360
V +G N+LP G + L V
Sbjct: 456 VIKVLLGENPENELPIATTPSVAGLQTVLDV 486
>AT5G61060.1 | Symbols: HDA05, HDA5, ATHDA5 | histone deacetylase 5
| chr5:24567137-24570917 REVERSE LENGTH=660
Length = 660
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/306 (27%), Positives = 142/306 (46%), Gaps = 26/306 (8%)
Query: 36 GQGHPMKPHRIRMAHELIINYSLFRRMQINRPYPAAVEDICRFHSDDYVDFLASVSPEIL 95
G+ HP P RIR+ E + + +R + A + + H+ D+V+ + S+S +
Sbjct: 43 GEDHPECPDRIRVIWEKLQLAGVSQRCVVLGSSKAEDKHLQLVHTKDHVNLVKSISTK-- 100
Query: 96 SEPTHSHYRQLKRYNVGEDCPVFDGLFDFCQASAGGSIGAAVTLNHSLADIAINWAGGL- 154
YR+ R + +G A GS+ V L +A+ ++ +
Sbjct: 101 ----QKDYRR-NRIASQLNSIYLNGGSSEAAYLAAGSV---VKLAEKVAEGELDCGFAIV 152
Query: 155 ----HHAKKAEASGFCYVNDIVLGILELLKVH-----RRVLYVDIDVHHGDGVEEAFYTT 205
HHA+ EA GFC N++ + LL +++L VD DVHHG+G ++ F+
Sbjct: 153 RPPGHHAEADEAMGFCLFNNVAVAASFLLNERPDLGVKKILIVDWDVHHGNGTQKMFWKD 212
Query: 206 DRVMTVSFHK--FGNFFPG--TGHIKDTGLGPGKNYAINVPLDDG-MDDVNFRDLFRPII 260
RV+ S H+ +G F+P G G GPG+ + INVP D G D ++ + I+
Sbjct: 213 PRVLFFSVHRHEYGGFYPAGDDGDYNMVGEGPGEGFNINVPWDQGRCGDADYLAAWDHIL 272
Query: 261 RKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSYNVPLMLLG-GGGYT 319
V + PD + L G D+ D LG ++ G++ L+ L + ++L GGY
Sbjct: 273 IPVAREFNPDVIFLSAGFDAAINDPLGGCCVTPYGYSVMLKKLMEFAQGKIVLALEGGYN 332
Query: 320 VRSVAR 325
+ S+A+
Sbjct: 333 LDSIAK 338
>AT3G18520.1 | Symbols: HDA15, ATHDA15 | histone deacetylase 15 |
chr3:6361605-6365367 FORWARD LENGTH=552
Length = 552
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 106/211 (50%), Gaps = 5/211 (2%)
Query: 155 HHAKKAEASGFC-YVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSF 213
HHA A GFC + N V ++ ++VL VD DVHHG+G +E F V+ +S
Sbjct: 276 HHAGVRHAMGFCLHNNAAVAALVAQAAGAKKVLIVDWDVHHGNGTQEIFEQNKSVLYISL 335
Query: 214 HKF--GNFFPGTGHIKDTGLGPGKNYAINVPLD-DGMDDVNFRDLFRPIIRKVMEVYQPD 270
H+ GNF+PGTG + G G+ Y +NVP G+ D ++ F+ ++ + + PD
Sbjct: 336 HRHEGGNFYPGTGAADEVGSNGGEGYCVNVPWSCGGVGDKDYIFAFQHVVLPIASAFSPD 395
Query: 271 AVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSY-NVPLMLLGGGGYTVRSVARCWCY 329
V++ G D+ GD LGC +++ G++ + L ++++ GGY +RS++
Sbjct: 396 FVIISAGFDAARGDPLGCCDVTPAGYSRMTQMLGDLCGGKMLVILEGGYNLRSISASATA 455
Query: 330 ETAVAVGVELSNKLPFNQYYEFFGPEYTLHV 360
V +G N+LP G + L V
Sbjct: 456 VIKVLLGENPENELPIATTPSVAGLQTVLDV 486
>AT5G61060.2 | Symbols: HDA05 | histone deacetylase 5 |
chr5:24567137-24570917 REVERSE LENGTH=664
Length = 664
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 141/310 (45%), Gaps = 30/310 (9%)
Query: 36 GQGHPMKPHRIRMAHELIINYSLFRRMQINRPYPAAVEDICRFHSDDYVDFLASVSPEIL 95
G+ HP P RIR+ E + + +R + A + + H+ D+V+ + S+S +
Sbjct: 43 GEDHPECPDRIRVIWEKLQLAGVSQRCVVLGSSKAEDKHLQLVHTKDHVNLVKSISTK-- 100
Query: 96 SEPTHSHYRQLKRYNVGEDCPVFDGLFDFCQASAGGSIGAAVTLNHSLADIAINWAGGL- 154
YR+ R + +G A GS+ V L +A+ ++ +
Sbjct: 101 ----QKDYRR-NRIASQLNSIYLNGGSSEAAYLAAGSV---VKLAEKVAEGELDCGFAIV 152
Query: 155 ----HHAKKAEASGFCYVNDIVLGILELLKVH-----RRVLYVDIDVHHGDGVEEAFYTT 205
HHA+ EA GFC N++ + LL +++L VD DVHHG+G ++ F+
Sbjct: 153 RPPGHHAEADEAMGFCLFNNVAVAASFLLNERPDLGVKKILIVDWDVHHGNGTQKMFWKD 212
Query: 206 DRVMTVSFHK--FGNFFPG--TGHIKDTGLGPGKNYAINVPLDDG-MDDVNFRDLFRPII 260
RV+ S H+ +G F+P G G GPG+ + INVP D G D ++ + I+
Sbjct: 213 PRVLFFSVHRHEYGGFYPAGDDGDYNMVGEGPGEGFNINVPWDQGRCGDADYLAAWDHIL 272
Query: 261 RKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLR-----FLRSYNVPLMLLGG 315
V + PD + L G D+ D LG ++ G++ L+ + ++L
Sbjct: 273 IPVAREFNPDVIFLSAGFDAAINDPLGGCCVTPYGYSVMLKKVGVELMEFAQGKIVLALE 332
Query: 316 GGYTVRSVAR 325
GGY + S+A+
Sbjct: 333 GGYNLDSIAK 342
>AT5G61070.1 | Symbols: HDA18, ATHDA18 | histone deacetylase of the
RPD3/HDA1 superfamily 18 | chr5:24571297-24574372
REVERSE LENGTH=682
Length = 682
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 110/219 (50%), Gaps = 23/219 (10%)
Query: 130 GGSIGAAVTLNHSLADIAINWAGGL------------HHAKKAEASGFCYVNDIVLGILE 177
GGS AA S+ +A A G HHA+ EA GFC N++ +
Sbjct: 153 GGSSEAAYLAAGSVVKVAEKVAEGELDCGFAIVRPPGHHAESDEAMGFCLFNNVAVAASF 212
Query: 178 LLKVH-----RRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHK--FGNFFP--GTGHIKD 228
LL +++L VD D+HHG+G ++ F+ RV+ S H+ G+F+P G
Sbjct: 213 LLNERPDLDVKKILIVDWDIHHGNGTQKMFWKDSRVLIFSVHRHDHGSFYPFGDDGDFNM 272
Query: 229 TGLGPGKNYAINVPLDD-GMDDVNFRDLFRPIIRKVMEVYQPDAVVLQCGADSLSGDRLG 287
G GPG+ + INVP + G D ++ ++ I+ V + ++PD ++L G D+ GD LG
Sbjct: 273 VGEGPGEGFNINVPWEQGGCGDADYLAVWNHILIPVTKEFKPDIILLSAGFDAAIGDPLG 332
Query: 288 CFNLSVKGHADCLRFLRSY-NVPLMLLGGGGYTVRSVAR 325
++ G++ L+ L + + ++L GGY + S+ +
Sbjct: 333 GCCVTPYGYSVMLKKLMEFAHGKIVLALEGGYNLESLGK 371
>AT4G33470.1 | Symbols: hda14, ATHDA14 | histone deacetylase 14 |
chr4:16102774-16105439 REVERSE LENGTH=423
Length = 423
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 68/128 (53%), Gaps = 3/128 (2%)
Query: 155 HHAKKAEASGFCYVNDIVLGILELLKVH--RRVLYVDIDVHHGDGVEEAFYTTDRVMTVS 212
HHA GFC ++ + + H +R+ +D DVHHG+G +AF + +S
Sbjct: 201 HHAVPKGPMGFCVFGNVAIAARHAQRTHGLKRIFIIDFDVHHGNGTNDAFTEDPDIFFLS 260
Query: 213 FHKFGNFFPGTGHIKDTGLGPGKNYAINVPLDDGMDDVNFRDLFRPIIRKVMEVYQPDAV 272
H+ G++ PGTG I D G G G+ +N+PL G D+ R +F II + ++PD +
Sbjct: 261 THQDGSY-PGTGKISDIGKGKGEGTTLNLPLPGGSGDIAMRTVFEEIIVPCAQRFKPDII 319
Query: 273 VLQCGADS 280
++ G D+
Sbjct: 320 LVSAGYDA 327
>AT3G44660.1 | Symbols: hda10 | histone deacetylase 10 |
chr3:16214964-16215785 REVERSE LENGTH=142
Length = 142
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 16/119 (13%)
Query: 288 CFNLSVKGHADCLRFLRSYNVPLMLLGGGGYTVRSVARCWCYETAVAVGVELSNKLPFNQ 347
F++ GHA+C GGYT +VARCW ET + + EL N++P N
Sbjct: 2 AFSMLFTGHAEC----------------GGYTKENVARCWTVETGILLDTELPNEIPEND 45
Query: 348 YYEFFGPEYTLHVSPRSMANLNTPQDLELIRNLLLEQISRLPHAPSIPFQTTPSTIEVP 406
Y ++F P+++L + + NLNT + I+ +LE + + HAPS+ Q P +P
Sbjct: 46 YIKYFAPDFSLKIPGGHIENLNTKSYISSIKVQILENLRYIQHAPSVQMQEVPPDFYIP 104