Miyakogusa Predicted Gene

Lj1g3v0318460.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0318460.1 tr|C1E0J5|C1E0J5_MICSR Predicted protein
OS=Micromonas sp. (strain RCC299 / NOUM17)
GN=MICPUN_107758,29.23,0.000000000000004,seg,NULL,CUFF.25540.1
         (426 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G48470.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   529   e-150

>AT5G48470.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
           growth stages; Has 30201 Blast hits to 17322 proteins in
           780 species: Archae - 12; Bacteria - 1396; Metazoa -
           17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
           Eukaryotes - 2996 (source: NCBI BLink). |
           chr5:19641810-19644127 FORWARD LENGTH=397
          Length = 397

 Score =  529 bits (1363), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 266/344 (77%), Positives = 292/344 (84%), Gaps = 8/344 (2%)

Query: 89  YEVGGGYAAEE-------QLHHRNEPDIDTSAQREALLNGGEQVISVLQEMITLLEEMDI 141
           YEVGGGY  EE       Q +  N  D    A+ EALL GGEQV SVL+EMITLLE+M +
Sbjct: 55  YEVGGGYTDEELFERYGTQQNQTNVKDKLDPAEYEALLKGGEQVTSVLEEMITLLEDMKM 114

Query: 142 QEEESEKVAVELAAQGVIGKRVDQMESDFMLALDYMIQLAEQDQDDKRKSLLEVIKETVL 201
            E  SE VAVELAAQGVIGKRVD+MES FM+ALDYMIQLA++DQD+KRKSLLEV+KETVL
Sbjct: 115 NEA-SENVAVELAAQGVIGKRVDEMESGFMMALDYMIQLADKDQDEKRKSLLEVVKETVL 173

Query: 202 SHLTKKCPPHVQVIGLLCRTPLKESRHELLRRVAAGGGVFKGENDLKIHIPGANLNDIAN 261
           SHLTKKCPPHVQVIGLLCRTP KESRHELLRRVAAGGG F+ EN  K+HIPGANLNDIAN
Sbjct: 174 SHLTKKCPPHVQVIGLLCRTPKKESRHELLRRVAAGGGAFESENGTKLHIPGANLNDIAN 233

Query: 262 QADDLVETMETRPAVPDRKLLARLVLIREEARDMMGGGILDERNDRGLSTLPQSEVNFLT 321
           QADDL+ETMETRPA+PDRKLLARLVLIREEAR+MMGGGILDERNDRG +TLP+SEVNFL 
Sbjct: 234 QADDLLETMETRPAIPDRKLLARLVLIREEARNMMGGGILDERNDRGFTTLPESEVNFLA 293

Query: 322 KLVALKPGKVVLGMIRNVMQGKDEGADNSGRSDEDDTTHRVTSGIAGRASVTGRKPHPVR 381
           KLVALKPGK V  MI+NVMQGKDEGADN  + D+  T  R  SG+ GR SVTGRKP PVR
Sbjct: 294 KLVALKPGKTVQQMIQNVMQGKDEGADNLSKEDDSSTEGRKPSGLNGRGSVTGRKPLPVR 353

Query: 382 PGMFLETVSKVLSGIYAGNDSGITAQHLEWVHQKTLQVLQEIAF 425
           PGMFLETV+KVL  IY+GN SGITAQHLEWVHQKTLQVL+EIA+
Sbjct: 354 PGMFLETVTKVLGSIYSGNASGITAQHLEWVHQKTLQVLEEIAY 397