Miyakogusa Predicted Gene

Lj1g3v0318250.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0318250.2 tr|Q9LYD2|Q9LYD2_ARATH At5g11600 OS=Arabidopsis
thaliana GN=F15N18_190 PE=2 SV=1,52.69,2e-19, ,CUFF.25528.2
         (98 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G11600.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   100   4e-22
AT1G19990.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    71   1e-13

>AT5G11600.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11
           growth stages; BEST Arabidopsis thaliana protein match
           is: unknown protein (TAIR:AT1G19990.1); Has 1807 Blast
           hits to 1807 proteins in 277 species: Archae - 0;
           Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
           Viruses - 0; Other Eukaryotes - 339 (source: NCBI
           BLink). | chr5:3733815-3735015 REVERSE LENGTH=242
          Length = 242

 Score = 99.8 bits (247), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 49/93 (52%), Positives = 65/93 (69%), Gaps = 8/93 (8%)

Query: 3   LQNRFFGLCRQKEPLRIFYESLSKQIPPSEMAEFWLMQHGLLPSERAKKAFDKKQRRQKE 62
           L  + F    ++EPLRIFYESLSKQIP SEMAEFWLM+HG+L  E+AK+AF+KKQR+ K+
Sbjct: 124 LAGQKFDPPEEREPLRIFYESLSKQIPGSEMAEFWLMEHGMLSPEKAKRAFEKKQRKMKQ 183

Query: 63  LRTGTPVKT--------ETSQKVIYFRFDPLDG 87
           +R GTP K+        E+SQ+    + + LD 
Sbjct: 184 IRMGTPSKSAPTFSSKAESSQRTSASKNNGLDA 216


>AT1G19990.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: cultured cell;
           BEST Arabidopsis thaliana protein match is: unknown
           protein (TAIR:AT5G11600.1); Has 11256 Blast hits to 7192
           proteins in 541 species: Archae - 6; Bacteria - 629;
           Metazoa - 4714; Fungi - 936; Plants - 545; Viruses - 34;
           Other Eukaryotes - 4392 (source: NCBI BLink). |
           chr1:6935327-6936665 FORWARD LENGTH=251
          Length = 251

 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 47/62 (75%), Gaps = 2/62 (3%)

Query: 13  QKEPLRIFYESLSKQIPPSEMAEFWLMQHGLLPSERAKKAFDKKQRRQKELRTGTPVKTE 72
           +++PLRIFYESL KQIP S+MA+ WLM+ GLLP+E+AKK  +KK   QK  +  +PVK+ 
Sbjct: 127 ERDPLRIFYESLYKQIPTSDMAQIWLMESGLLPAEKAKKVLEKKL--QKGGKLSSPVKSA 184

Query: 73  TS 74
            S
Sbjct: 185 AS 186