Miyakogusa Predicted Gene

Lj1g3v0318200.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0318200.1 tr|A2A1E8|A2A1E8_LOTJA Nucleoporin OS=Lotus
japonicus GN=NUP85 PE=2 SV=1,99.86,0,SUBFAMILY NOT NAMED,NULL; FROUNT
PROTEIN-RELATED,NULL; Nucleopor_Nup85,Nucleoporin Nup85-like;
seg,N,CUFF.25538.1
         (711 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G32910.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Nuclear po...   891   0.0  

>AT4G32910.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Nuclear pore
           complex protein, Nucleoporin Nup85-like
           (InterPro:IPR011502); Has 30201 Blast hits to 17322
           proteins in 780 species: Archae - 12; Bacteria - 1396;
           Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
           0; Other Eukaryotes - 2996 (source: NCBI BLink). |
           chr4:15881364-15885210 FORWARD LENGTH=716
          Length = 716

 Score =  891 bits (2303), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/716 (61%), Positives = 541/716 (75%), Gaps = 6/716 (0%)

Query: 1   MP--SDTVGNGVLVPFSGEGSDSVAVYPLNHGLSLPISRVAISWSRGNSLRVSLFAEPSA 58
           MP  S   G G LV FS +    V +YPL++GL  P+ R++ISW  GN+LRV++   P  
Sbjct: 1   MPGMSSESGGGELVLFSTKEKTPV-LYPLSYGLKSPVHRLSISWGCGNNLRVTVLRNPEL 59

Query: 59  TSPDSQASGAKVVEVKLSGEDPEISDSNWRRIAYGSVTPFALLQXXX---XXXXXXXXXX 115
              D    G KVV V+LSGED EISD  WRRIAYGSV+PFALLQ                
Sbjct: 60  RDDDDGEVGGKVVNVRLSGEDGEISDPQWRRIAYGSVSPFALLQSRRNSISSLSKMDMSS 119

Query: 116 XXYHVDWWEHVLEYSKDIASLLGGPKLSPGPIIEDPNAIATKCEEPTCLKAAWELLEMFY 175
             Y   WWE+V+EYS+DI SLL      P P+IEDP ++    EEPT LKAAWEL+E+FY
Sbjct: 120 SLYQTAWWEYVMEYSRDIKSLLSNTISLPAPLIEDPRSVIKNAEEPTSLKAAWELMELFY 179

Query: 176 VDKRSQAWLPERLVDWLADFDSLFTSTHETIHGKLVNFQKELVNIQVIEDDPRYWEVMSS 235
            DK   +WLPERLVDWL+++D L +S+H TI+ KL +FQKELV +Q IEDDPRYWEVM+S
Sbjct: 180 ADKTCLSWLPERLVDWLSEYDILLSSSHPTIYSKLQDFQKELVGLQAIEDDPRYWEVMAS 239

Query: 236 ALSVGWLDIVVKMLRLHGSYQLDQLSSRERENGLVEVVAVLISKMPRLRPESAVENLGEC 295
           ALSVGWL+IVVK+L LHGSYQLDQL  RE ENGLVE VAVLISKMPR+RP+      GEC
Sbjct: 240 ALSVGWLEIVVKLLHLHGSYQLDQLGHRETENGLVEAVAVLISKMPRMRPQLEDGKFGEC 299

Query: 296 FKSKPDFIKAWEKWRSQITKLDCSPFWIQCDNQQTCDGLRNLLQIMLGNTESLCTATCHW 355
             +KPDF+K  E+W+SQITKL+CS FW+QC + QT +GLRN+L+IM+GN + L  ATC+W
Sbjct: 300 SAAKPDFMKTRERWQSQITKLECSAFWVQCAHHQTREGLRNMLKIMIGNADCLRAATCNW 359

Query: 356 IELYVSHFLYIRPFTTGIESMYNLAQKCMQLKPPSSIHKLTGLMIGILGENTEVVLAECS 415
           +EL+VSH LY+RPFT G++ M++LAQKC+Q KP ++ HKL  L+IGILGENTEVVLAECS
Sbjct: 360 MELFVSHLLYLRPFTKGLDGMHSLAQKCVQSKPVNTSHKLLRLLIGILGENTEVVLAECS 419

Query: 416 REFGPWMVAHAVELLTAGSEQAEVLLHDEHYNLGGISIVELHRLAYAQVLSSHALTWQIA 475
           +EFG WMVAHA+ELLTAGSE+ EVL+H+E   LGGI++ ELHRL YAQVLSSHALTWQIA
Sbjct: 420 KEFGSWMVAHAMELLTAGSEEGEVLVHEEQRKLGGINMEELHRLVYAQVLSSHALTWQIA 479

Query: 476 PIYLTSCMKQGMGLLENLLYRQSVQHNDTLLKNIEICRLYELDHISSKIMKVAGVFHWKH 535
           PIYL SC KQG+GLLE L YRQ VQ N  L+K++EICRLYEL ++S+K+MK++GV HWKH
Sbjct: 480 PIYLASCEKQGLGLLELLFYRQPVQENQMLIKSLEICRLYELSNVSAKLMKISGVHHWKH 539

Query: 536 GRKGAGVFWLQQAQDASCLGRIALQLFDAVGKSISDESFKQWEGIIELLGSESKPAGGLE 595
           GRKG+G+FWLQQA+D +CL  IA QLFD+VGKS+SDES KQWEG++ELLGSES+ +GGL+
Sbjct: 540 GRKGSGIFWLQQARDENCLSVIAQQLFDSVGKSLSDESLKQWEGLVELLGSESQISGGLD 599

Query: 596 FLHKYRDFKKSLQQVSGGKSTEAARQAVGSLILLMKNPSTPPRFWLPLLYDSLKLLNWKD 655
           FLHKYRDFK+SL+ V  GK+ +AA +AV  L+ LMK+PSTP RFWLPLL+DSLKLLNW +
Sbjct: 600 FLHKYRDFKRSLKVVHDGKTIDAAHEAVERLVSLMKSPSTPQRFWLPLLHDSLKLLNWPE 659

Query: 656 CXXXXXXXXXXXXXXXXXXXXARLRPHFTEPSLPPEALSSVRLALATNLGRAILDE 711
                                ARLRP F E  L  +A+ SVRLALATNLGRA L+E
Sbjct: 660 RSLLNVTQTNLMLNKLQELSIARLRPGFIESELSAQAVGSVRLALATNLGRAFLEE 715