Miyakogusa Predicted Gene

Lj1g3v0318000.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0318000.2 Non Chatacterized Hit- tr|E1Z9B1|E1Z9B1_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,40.83,3e-17,TIGR00046: RNA methyltransferase, RsmE
family,Ribosomal RNA small subunit methyltransferase E;
Methy,CUFF.25518.2
         (239 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G50000.1 | Symbols:  | methyltransferases | chr1:18515183-185...   310   7e-85
AT1G50000.2 | Symbols:  | methyltransferases | chr1:18515595-185...   258   3e-69

>AT1G50000.1 | Symbols:  | methyltransferases |
           chr1:18515183-18517244 REVERSE LENGTH=296
          Length = 296

 Score =  310 bits (793), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 151/232 (65%), Positives = 182/232 (78%), Gaps = 7/232 (3%)

Query: 15  RSWLPSLCVRAFS--SSSEYGD-----QSRGGLPRFFSETLPPSKGNVVRVQGDEFWHMT 67
           RSWLP+   ++F+  SSS   D     QSRGGLPRFFS+ LP  KG VVRVQG EFWHM 
Sbjct: 21  RSWLPTSSFKSFATVSSSPPSDLNLRNQSRGGLPRFFSDDLPSRKGGVVRVQGSEFWHMA 80

Query: 68  KVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHVFSGFGTL 127
           KVLRL  +DRV+LFNGKGGLVEGCI+++D+TG+DF+A  D ++I P   Q  VF+ FGTL
Sbjct: 81  KVLRLKQEDRVELFNGKGGLVEGCIQSIDKTGVDFIAQEDQKVILPQGMQWQVFAAFGTL 140

Query: 128 KGGRADWLVEKCTELGASSVTPLLTERSSSISENRVDRLERVILAASKQCQRLHEMIFKP 187
           KGGRADWL+EKCTELGASSVTPLLTERS  ISENRVDRLERV  AA+KQCQRLH+M+  P
Sbjct: 141 KGGRADWLIEKCTELGASSVTPLLTERSPIISENRVDRLERVSFAAAKQCQRLHQMVLNP 200

Query: 188 PVDIDDLSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDFTE 239
           P+    L   I +SKL L+ATA+A P+LNA+ S  K++SGL+I+GPEGDFT+
Sbjct: 201 PIKFGTLLDHILKSKLCLVATAEAKPLLNAVNSSAKESSGLLIVGPEGDFTK 252


>AT1G50000.2 | Symbols:  | methyltransferases |
           chr1:18515595-18517244 REVERSE LENGTH=210
          Length = 210

 Score =  258 bits (659), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 125/187 (66%), Positives = 146/187 (78%), Gaps = 7/187 (3%)

Query: 15  RSWLPSLCVRAFS--SSSEYGD-----QSRGGLPRFFSETLPPSKGNVVRVQGDEFWHMT 67
           RSWLP+   ++F+  SSS   D     QSRGGLPRFFS+ LP  KG VVRVQG EFWHM 
Sbjct: 21  RSWLPTSSFKSFATVSSSPPSDLNLRNQSRGGLPRFFSDDLPSRKGGVVRVQGSEFWHMA 80

Query: 68  KVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHVFSGFGTL 127
           KVLRL  +DRV+LFNGKGGLVEGCI+++D+TG+DF+A  D ++I P   Q  VF+ FGTL
Sbjct: 81  KVLRLKQEDRVELFNGKGGLVEGCIQSIDKTGVDFIAQEDQKVILPQGMQWQVFAAFGTL 140

Query: 128 KGGRADWLVEKCTELGASSVTPLLTERSSSISENRVDRLERVILAASKQCQRLHEMIFKP 187
           KGGRADWL+EKCTELGASSVTPLLTERS  ISENRVDRLERV  AA+KQCQRLH+M+  P
Sbjct: 141 KGGRADWLIEKCTELGASSVTPLLTERSPIISENRVDRLERVSFAAAKQCQRLHQMVLNP 200

Query: 188 PVDIDDL 194
           P+    L
Sbjct: 201 PIKFGTL 207