Miyakogusa Predicted Gene

Lj1g3v0307940.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0307940.1 tr|G7J4A8|G7J4A8_MEDTR Thyroid
receptor-interacting protein OS=Medicago truncatula GN=MTR_3g076930
P,89.47,0,AAA,ATPase, AAA-type, core; P-loop containing nucleoside
triphosphate hydrolases,NULL; no descriptio,CUFF.25509.1
         (136 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G24710.1 | Symbols:  | P-loop containing nucleoside triphosph...   203   3e-53
AT2G03670.1 | Symbols: CDC48B | cell division cycle 48B | chr2:1...    54   3e-08
AT3G53230.1 | Symbols:  | ATPase, AAA-type, CDC48 protein | chr3...    47   3e-06

>AT4G24710.1 | Symbols:  | P-loop containing nucleoside triphosphate
           hydrolases superfamily protein | chr4:12745752-12748995
           REVERSE LENGTH=475
          Length = 475

 Score =  203 bits (516), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 99/110 (90%), Positives = 105/110 (95%)

Query: 1   MVEEEGNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQLDKLKSAPNVIILTT 60
           MVEE+GNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQ+DKLKSAPNVIILTT
Sbjct: 277 MVEEDGNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSAPNVIILTT 336

Query: 61  SNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCVQELIRSGILASFQ 110
           SNIT AID+AFVDRADIKAYVGPPTL  RYEILRSCV+ELI  GI++SFQ
Sbjct: 337 SNITTAIDVAFVDRADIKAYVGPPTLHVRYEILRSCVEELISKGIISSFQ 386


>AT2G03670.1 | Symbols: CDC48B | cell division cycle 48B |
           chr2:1117595-1120361 FORWARD LENGTH=603
          Length = 603

 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 2/86 (2%)

Query: 11  VLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQLDKLKSAPNVIILTTSNITAAIDIA 70
           +  DE + +A  R    S +  +   R+++ LLT++D L+ A  +++L  +N   AID A
Sbjct: 383 IFFDEADVVACKRGDESSSNSSTVGERLLSTLLTEMDGLEEAKGILVLAATNRPYAIDAA 442

Query: 71  FV--DRADIKAYVGPPTLQARYEILR 94
            +   R D+  YV PP L+AR+EIL+
Sbjct: 443 LMRPGRFDLVLYVPPPDLEARFEILQ 468


>AT3G53230.1 | Symbols:  | ATPase, AAA-type, CDC48 protein |
           chr3:19723416-19726489 FORWARD LENGTH=815
          Length = 815

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 3/91 (3%)

Query: 11  VLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQLDKLKSAPNVIILTTSNITAAIDIA 70
           +  DE++S+A  R  ++ G     + RV+N LLT++D + +   V I+  +N    ID A
Sbjct: 578 LFFDELDSIATQRGNSV-GDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPA 636

Query: 71  FV--DRADIKAYVGPPTLQARYEILRSCVQE 99
            +   R D   Y+  P  ++RY+I +SC+++
Sbjct: 637 LLRPGRLDQLIYIPLPDEESRYQIFKSCLRK 667