Miyakogusa Predicted Gene
- Lj1g3v0295860.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v0295860.1 Non Chatacterized Hit- tr|I1JXE6|I1JXE6_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,77.2,0,dnaX_nterm:
DNA polymerase III, subunit gamma and ,DNA polymerase III, subunit
gamma/ tau; REPLICATI,CUFF.25502.1
(919 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G24790.2 | Symbols: | AAA-type ATPase family protein | chr4:... 546 e-155
AT4G24790.1 | Symbols: | AAA-type ATPase family protein | chr4:... 546 e-155
AT2G02480.1 | Symbols: STI | AAA-type ATPase family protein | ch... 326 5e-89
AT1G14460.1 | Symbols: | AAA-type ATPase family protein | chr1:... 301 1e-81
AT4G18820.1 | Symbols: | AAA-type ATPase family protein | chr4:... 277 3e-74
AT5G45720.1 | Symbols: | AAA-type ATPase family protein | chr5:... 270 2e-72
AT5G45720.2 | Symbols: | AAA-type ATPase family protein | chr5:... 268 2e-71
AT1G21690.3 | Symbols: EMB1968 | ATPase family associated with v... 65 2e-10
AT1G21690.1 | Symbols: EMB1968, RFC4 | ATPase family associated ... 65 2e-10
AT1G21690.4 | Symbols: EMB1968 | ATPase family associated with v... 62 1e-09
AT1G21690.2 | Symbols: EMB1968, RFC4 | ATPase family associated ... 58 3e-08
AT1G63160.1 | Symbols: RFC2 | replication factor C 2 | chr1:2342... 51 5e-06
>AT4G24790.2 | Symbols: | AAA-type ATPase family protein |
chr4:12778222-12781345 FORWARD LENGTH=857
Length = 857
Score = 546 bits (1406), Expect = e-155, Method: Compositional matrix adjust.
Identities = 314/674 (46%), Positives = 414/674 (61%), Gaps = 46/674 (6%)
Query: 220 HSTSVDINQDFDVLDNNDNGCGISFCWSKSPRFRESNLYSKIEDRPLILHQVDDTDLHGD 279
HS D + DFD N GCGI++CWS++PR+R SN S +E+ PL L G+
Sbjct: 174 HSYYGDEDVDFDSQSNR--GCGITYCWSRTPRYRGSNQSSDVEEYPL---------LPGN 222
Query: 280 RNMRHDGGDISPTLET-PRSLSMKFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHG 338
N D ++P+ E RSLS KFRP SF +LVGQ VVV+ LL I RG I S YLFHG
Sbjct: 223 GNGESDV--VTPSHEVLSRSLSQKFRPKSFDELVGQEVVVKCLLSTILRGRITSVYLFHG 280
Query: 339 PRGTGKTSASRIFAAALNCLSVEGQ-KPCGLCRECVLFFSGRSKEVKEVDSVRINRTDQV 397
PRGTGKTS S+IFAAALNCLS +PCGLC EC +FSGR ++V E DS ++NR +
Sbjct: 281 PRGTGKTSTSKIFAAALNCLSQAAHSRPCGLCSECKSYFSGRGRDVMETDSGKLNRPSYL 340
Query: 398 KSLVKNACIPPISSRFKVFIIDECQLLKAETWASLSNNLENLSEHVVFVMITPDLDKLPR 457
+SL+K+A +PP+SSRFKVFIIDECQLL ETW +L N+L+N S+H VF+++T +L+KLPR
Sbjct: 341 RSLIKSASLPPVSSRFKVFIIDECQLLCQETWGTLLNSLDNFSQHSVFILVTSELEKLPR 400
Query: 458 SAVSRAQTYHFPKVKDADIACRLEKICVEEGLDFDQAALDFIAAKSCGSVRDAEMMLDQX 517
+ +SR+Q YHF KV DADI+ +L KIC+EEG+DFDQ A+DFIA+KS GS+RDAE+MLDQ
Sbjct: 401 NVLSRSQKYHFSKVCDADISTKLAKICIEEGIDFDQGAVDFIASKSDGSLRDAEIMLDQL 460
Query: 518 XXXXXXXXXXXVHELTGIVXXXXXXXXXXXXXXXXXXNTVIRARELMRSRIGPLQLVSQL 577
++L G+V NTVIRARELMRS+I P+QL+SQL
Sbjct: 461 SLLGKRITTSLAYKLIGVVSDDELLDLLDLAMSSDTSNTVIRARELMRSKIDPMQLISQL 520
Query: 578 ANLIMDILAGKCVDGGSEVRSKFSGRYTSEADLQKLSRAVRILSEAEKQLRISKNQTTWL 637
AN+IMDI+AG + S R +F R+TSE ++QKL A++ILS+AEK LR SKNQTTWL
Sbjct: 521 ANVIMDIIAGNSQESSSATRLRFLTRHTSEEEMQKLRNALKILSDAEKHLRASKNQTTWL 580
Query: 638 TVALLQLSSVDYPS--VDVNDTKLCLREQSMEHLATGQCGD---KSYRLGVQEDHKGTLD 692
TVALLQLS+ D S D N ++ + ++G GD G + + T++
Sbjct: 581 TVALLQLSNTDSSSFATDENGRNQINKDVELSSTSSGCPGDVIKSDAEKGQERNCNETVE 640
Query: 693 AIWYKATEICQSGQLKTFLRKKGKLSSLHVDRSTSWLAIAELEFRHRHHVSKAEKSWKLI 752
++W T++C S LK FL K+G+L+SL VD+ +AIAELEF HV++AEKSWKLI
Sbjct: 641 SVWKTVTDLCCSDSLKRFLWKRGRLTSLTVDKG---VAIAELEFYTPQHVARAEKSWKLI 697
Query: 753 ASSLQFILGCNIELRITYEPRA-SDSKYAKLKXXXXXXXXXXXXAQ-QKSLSSNGSESDY 810
A S Q +LGCN+E+++ A S K AK KS + ++SD
Sbjct: 698 ADSFQSVLGCNVEIQMNLVISACSPPKSAKAAASLFFGLFSCSRRMLHKSYLTTRTDSDC 757
Query: 811 ADHVSQNPMIKDKTLTSSDYHGMDVVTTLRSCKGNLLSSGERFLNRSFQENMGTSCSEVD 870
A S+ P V +LRSC+GN+L + R + S + SCS D
Sbjct: 758 A---SEKPA---------------VTNSLRSCQGNVLRA--RSVRSSANASSRMSCSS-D 796
Query: 871 SSKEKGNRCAHLVP 884
C +P
Sbjct: 797 QGDATSAMCTPHIP 810
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/58 (70%), Positives = 49/58 (84%)
Query: 2 DGRRHSVDIPISKTLVALRRVRSLRDPSTNSICKRSSLIDNVQWENGSGNGISLLFPE 59
+ RRHSVD+PI++TLVALRRVRSLRDP T S+ K +SL+DNV+WE GS NGISL F E
Sbjct: 3 ETRRHSVDVPITRTLVALRRVRSLRDPCTTSMSKFASLLDNVKWETGSNNGISLQFVE 60
>AT4G24790.1 | Symbols: | AAA-type ATPase family protein |
chr4:12778222-12781345 FORWARD LENGTH=857
Length = 857
Score = 546 bits (1406), Expect = e-155, Method: Compositional matrix adjust.
Identities = 314/674 (46%), Positives = 414/674 (61%), Gaps = 46/674 (6%)
Query: 220 HSTSVDINQDFDVLDNNDNGCGISFCWSKSPRFRESNLYSKIEDRPLILHQVDDTDLHGD 279
HS D + DFD N GCGI++CWS++PR+R SN S +E+ PL L G+
Sbjct: 174 HSYYGDEDVDFDSQSNR--GCGITYCWSRTPRYRGSNQSSDVEEYPL---------LPGN 222
Query: 280 RNMRHDGGDISPTLET-PRSLSMKFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHG 338
N D ++P+ E RSLS KFRP SF +LVGQ VVV+ LL I RG I S YLFHG
Sbjct: 223 GNGESDV--VTPSHEVLSRSLSQKFRPKSFDELVGQEVVVKCLLSTILRGRITSVYLFHG 280
Query: 339 PRGTGKTSASRIFAAALNCLSVEGQ-KPCGLCRECVLFFSGRSKEVKEVDSVRINRTDQV 397
PRGTGKTS S+IFAAALNCLS +PCGLC EC +FSGR ++V E DS ++NR +
Sbjct: 281 PRGTGKTSTSKIFAAALNCLSQAAHSRPCGLCSECKSYFSGRGRDVMETDSGKLNRPSYL 340
Query: 398 KSLVKNACIPPISSRFKVFIIDECQLLKAETWASLSNNLENLSEHVVFVMITPDLDKLPR 457
+SL+K+A +PP+SSRFKVFIIDECQLL ETW +L N+L+N S+H VF+++T +L+KLPR
Sbjct: 341 RSLIKSASLPPVSSRFKVFIIDECQLLCQETWGTLLNSLDNFSQHSVFILVTSELEKLPR 400
Query: 458 SAVSRAQTYHFPKVKDADIACRLEKICVEEGLDFDQAALDFIAAKSCGSVRDAEMMLDQX 517
+ +SR+Q YHF KV DADI+ +L KIC+EEG+DFDQ A+DFIA+KS GS+RDAE+MLDQ
Sbjct: 401 NVLSRSQKYHFSKVCDADISTKLAKICIEEGIDFDQGAVDFIASKSDGSLRDAEIMLDQL 460
Query: 518 XXXXXXXXXXXVHELTGIVXXXXXXXXXXXXXXXXXXNTVIRARELMRSRIGPLQLVSQL 577
++L G+V NTVIRARELMRS+I P+QL+SQL
Sbjct: 461 SLLGKRITTSLAYKLIGVVSDDELLDLLDLAMSSDTSNTVIRARELMRSKIDPMQLISQL 520
Query: 578 ANLIMDILAGKCVDGGSEVRSKFSGRYTSEADLQKLSRAVRILSEAEKQLRISKNQTTWL 637
AN+IMDI+AG + S R +F R+TSE ++QKL A++ILS+AEK LR SKNQTTWL
Sbjct: 521 ANVIMDIIAGNSQESSSATRLRFLTRHTSEEEMQKLRNALKILSDAEKHLRASKNQTTWL 580
Query: 638 TVALLQLSSVDYPS--VDVNDTKLCLREQSMEHLATGQCGD---KSYRLGVQEDHKGTLD 692
TVALLQLS+ D S D N ++ + ++G GD G + + T++
Sbjct: 581 TVALLQLSNTDSSSFATDENGRNQINKDVELSSTSSGCPGDVIKSDAEKGQERNCNETVE 640
Query: 693 AIWYKATEICQSGQLKTFLRKKGKLSSLHVDRSTSWLAIAELEFRHRHHVSKAEKSWKLI 752
++W T++C S LK FL K+G+L+SL VD+ +AIAELEF HV++AEKSWKLI
Sbjct: 641 SVWKTVTDLCCSDSLKRFLWKRGRLTSLTVDKG---VAIAELEFYTPQHVARAEKSWKLI 697
Query: 753 ASSLQFILGCNIELRITYEPRA-SDSKYAKLKXXXXXXXXXXXXAQ-QKSLSSNGSESDY 810
A S Q +LGCN+E+++ A S K AK KS + ++SD
Sbjct: 698 ADSFQSVLGCNVEIQMNLVISACSPPKSAKAAASLFFGLFSCSRRMLHKSYLTTRTDSDC 757
Query: 811 ADHVSQNPMIKDKTLTSSDYHGMDVVTTLRSCKGNLLSSGERFLNRSFQENMGTSCSEVD 870
A S+ P V +LRSC+GN+L + R + S + SCS D
Sbjct: 758 A---SEKPA---------------VTNSLRSCQGNVLRA--RSVRSSANASSRMSCSS-D 796
Query: 871 SSKEKGNRCAHLVP 884
C +P
Sbjct: 797 QGDATSAMCTPHIP 810
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/58 (70%), Positives = 49/58 (84%)
Query: 2 DGRRHSVDIPISKTLVALRRVRSLRDPSTNSICKRSSLIDNVQWENGSGNGISLLFPE 59
+ RRHSVD+PI++TLVALRRVRSLRDP T S+ K +SL+DNV+WE GS NGISL F E
Sbjct: 3 ETRRHSVDVPITRTLVALRRVRSLRDPCTTSMSKFASLLDNVKWETGSNNGISLQFVE 60
>AT2G02480.1 | Symbols: STI | AAA-type ATPase family protein |
chr2:661093-665337 FORWARD LENGTH=1218
Length = 1218
Score = 326 bits (835), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 174/363 (47%), Positives = 230/363 (63%), Gaps = 5/363 (1%)
Query: 292 TLETPRSLSMKFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSASRIF 351
T ET RS S K+RP F +L+GQ++VV+SL+ A+ R IA YLF GPRGTGKTS +RIF
Sbjct: 444 TPETIRSFSQKYRPMFFEELIGQSIVVQSLMNAVKRSRIAPVYLFQGPRGTGKTSTARIF 503
Query: 352 AAALNCLSVEGQKPCGLCRECVLFFSGRSKEVKEVDSVRINRTDQVKSLVKN--ACIPPI 409
+AALNC++ E KPCG C+EC F SG+SK+ E+D D+V+ L+KN +P
Sbjct: 504 SAALNCVATEEMKPCGYCKECNDFMSGKSKDFWELDGANKKGADKVRYLLKNLPTILPRN 563
Query: 410 SSRFKVFIIDECQLLKAETWASLSNNLENLSEHVVFVMITPDLDKLPRSAVSRAQTYHFP 469
SS +KVF+IDEC LL ++TW S LEN + VVF+ IT DL+ +PR+ SR Q + F
Sbjct: 564 SSMYKVFVIDECHLLPSKTWLSFLKFLENPLQKVVFIFITTDLENVPRTIQSRCQKFLFD 623
Query: 470 KVKDADIACRLEKICVEEGLDFDQAALDFIAAKSCGSVRDAEMMLDQXXXXXXXXXXXXV 529
K+KD+DI RL+KI +E LD D ALD IA + GS+RDAE ML+Q V
Sbjct: 624 KLKDSDIVVRLKKIASDENLDVDLHALDLIAMNADGSLRDAETMLEQLSLLGKRITTALV 683
Query: 530 HELTGIVXXXXXXXXXXXXXXXXXXNTVIRARELMRSRIGPLQLVSQLANLIMDILAG-- 587
+EL G+V TV RAREL+ P+ L+SQLA+LIMDI+AG
Sbjct: 684 NELVGVVSDEKLLELLELALSSDTAETVKRARELLDLGADPIVLMSQLASLIMDIIAGTY 743
Query: 588 KCVDGGSEVRSKFSGRYTSEADLQKLSRAVRILSEAEKQLRISKNQTTWLTVALLQLSSV 647
K VD + F GR +EAD++ L A+++LSEAEKQLR+S +++TW T LLQL S+
Sbjct: 744 KVVDEKYS-NAFFDGRNLTEADMEGLKHALKLLSEAEKQLRVSNDRSTWFTATLLQLGSM 802
Query: 648 DYP 650
P
Sbjct: 803 PSP 805
>AT1G14460.1 | Symbols: | AAA-type ATPase family protein |
chr1:4948962-4952750 REVERSE LENGTH=1116
Length = 1116
Score = 301 bits (772), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 162/363 (44%), Positives = 224/363 (61%), Gaps = 4/363 (1%)
Query: 292 TLETPRSLSMKFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSASRIF 351
T E+ +SLS K++P F +L+GQ++VV+SL+ A+ +G +A YLF GPRGTGKTS +RI
Sbjct: 417 TPESIQSLSQKYKPMFFDELIGQSIVVQSLMNAVKKGRVAHVYLFQGPRGTGKTSTARIL 476
Query: 352 AAALNC-LSVEGQKPCGLCRECVLFFSGRSKEVKEVDSVRINRTDQVKSLVKN--ACIPP 408
+AALNC + E KPCG C+EC + G+S+++ E+D+ + N ++V+ L+K P
Sbjct: 477 SAALNCDVVTEEMKPCGYCKECSDYMLGKSRDLLELDAGKKNGAEKVRYLLKKLLTLAPQ 536
Query: 409 ISSRFKVFIIDECQLLKAETWASLSNNLENLSEHVVFVMITPDLDKLPRSAVSRAQTYHF 468
S R+KVF+IDEC LL + TW SL LEN + VFV IT DLD +PR+ SR Q Y F
Sbjct: 537 SSQRYKVFVIDECHLLPSRTWLSLLKFLENPLQKFVFVCITTDLDNVPRTIQSRCQKYIF 596
Query: 469 PKVKDADIACRLEKICVEEGLDFDQAALDFIAAKSCGSVRDAEMMLDQXXXXXXXXXXXX 528
KV+D DI RL KI +E LD + ALD IA + GS+RDAE ML+Q
Sbjct: 597 NKVRDGDIVVRLRKIASDENLDVESQALDLIALNADGSLRDAETMLEQLSLMGKRITVDL 656
Query: 529 VHELTGIVXXXXXXXXXXXXXXXXXXNTVIRARELMRSRIGPLQLVSQLANLIMDILAGK 588
V+EL G+V TV +AREL+ P+ ++SQLA+LIMDI+AG
Sbjct: 657 VNELVGVVSDDKLLELLELALSSDTAETVKKARELLDLGADPILMMSQLASLIMDIIAGA 716
Query: 589 CVDGGSEVRSKFSGRYT-SEADLQKLSRAVRILSEAEKQLRISKNQTTWLTVALLQLSSV 647
+ F R +EADL++L A+++LSEAEKQLR+S +++TW LLQL S+
Sbjct: 717 YKALDEKYSEAFLDRRNLTEADLERLKHALKLLSEAEKQLRVSTDRSTWFIATLLQLGSM 776
Query: 648 DYP 650
P
Sbjct: 777 PSP 779
>AT4G18820.1 | Symbols: | AAA-type ATPase family protein |
chr4:10330371-10334090 FORWARD LENGTH=1097
Length = 1097
Score = 277 bits (708), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 177/487 (36%), Positives = 262/487 (53%), Gaps = 16/487 (3%)
Query: 297 RSLSMKFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSASRIFAAALN 356
+SL+ K+ P +F DL+GQN+VV++L A++R + Y+FHGP GTGKTS +RIFA ALN
Sbjct: 431 QSLTEKYTPKTFRDLLGQNLVVQALSNAVARRKLGLLYVFHGPNGTGKTSCARIFARALN 490
Query: 357 CLSVEGQKPCGLCRECVLFFSGRSKEVKEVDSVRINRTDQVKSLVK-NACIPPISSRFKV 415
C S+E KPCG C CV G+S ++EV V +++ L+ N + S R V
Sbjct: 491 CHSMEQPKPCGTCSSCVSHDMGKSWNIREVGPVGNYDFEKIMDLLDGNVMVSSQSPR--V 548
Query: 416 FIIDECQLLKAETWASLSNNLENLS-EHVVFVMITPDLDKLPRSAVSRAQTYHFPKVKDA 474
FI D+C L ++ W +LS ++ + HVVF+++ LD LP +SR Q + FPK+KDA
Sbjct: 549 FIFDDCDTLSSDCWNALSKVVDRAAPRHVVFILVCSSLDVLPHVIISRCQKFFFPKLKDA 608
Query: 475 DIACRLEKICVEEGLDFDQAALDFIAAKSCGSVRDAEMMLDQXXXXXXXXXXXXVHELTG 534
DI L+ I +E ++ D+ AL IA++S GS+RDAEM L+Q V EL G
Sbjct: 609 DIVYSLQWIASKEEIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVG 668
Query: 535 IVXXXXXXXXXXXXXXXXXXNTVIRARELMRSRIGPLQLVSQLANLIMDILAGKCVDGGS 594
+V NTV R +M + + PL L+SQLA +I DILAG
Sbjct: 669 LVSDEKLVDLLDLALSADTVNTVKNLRTIMETSVEPLALMSQLATVITDILAGSYDFTKD 728
Query: 595 EVRSKFSGRYT-SEADLQKLSRAVRILSEAEKQLRISKNQTTWLTVALLQLSS-VDYPSV 652
+ + KF R + D++KL +A++ LSEAEKQLR+S ++ TWLT ALLQL+ +Y
Sbjct: 729 QHKRKFFRRQPLPKEDMEKLRQALKTLSEAEKQLRVSNDKLTWLTAALLQLAPDQNYLLQ 788
Query: 653 DVNDTKLCLREQSMEHL------ATGQCGDKSYRLGVQEDHKGTLDAIWYKATEICQSGQ 706
+ RE S HL A G+ R G ++ ++ IW + E +
Sbjct: 789 RSSTADTGGRESSDHHLDPSSDAAGGRSSGLDRRRGDSRKNRPAVEEIWLEVIEKLRVNG 848
Query: 707 LKTFLRKKGKLSSLHVDRSTSWLAIAELEFRHRHHVSKAEKSWKLIASSLQFILGCNIEL 766
L+ FL K+G++ SL++ + + L F S AEK I + + +L + +
Sbjct: 849 LREFLYKEGRIVSLNLGSAPT----VHLMFSSPLTKSTAEKFRSHIMQAFEAVLESPVTI 904
Query: 767 RITYEPR 773
I E +
Sbjct: 905 EIRCETK 911
>AT5G45720.1 | Symbols: | AAA-type ATPase family protein |
chr5:18543338-18546629 REVERSE LENGTH=966
Length = 966
Score = 270 bits (691), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 169/489 (34%), Positives = 260/489 (53%), Gaps = 24/489 (4%)
Query: 297 RSLSMKFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSASRIFAAALN 356
+S + K+ P +F DL+GQN+VV++L AI++ + Y+FHGP GTGKTS +R+FA ALN
Sbjct: 343 QSFTQKYAPRTFRDLLGQNLVVQALSNAIAKRRVGLLYVFHGPNGTGKTSCARVFARALN 402
Query: 357 CLSVEGQKPCGLCRECVLFFSGRSKEVKEVDSVRINRTDQVKSLVKNACIPPISSRFKVF 416
C S E KPCG+C CV + G+++ ++E+ V ++ ++L+ I + V
Sbjct: 403 CHSTEQSKPCGVCSSCVSYDDGKNRYIREMGPV---KSFDFENLLDKTNIRQQQKQQLVL 459
Query: 417 IIDECQLLKAETWASLSNNLENLSEHVVFVMITPDLDKLPRSAVSRAQTYHFPKVKDADI 476
I D+C + + W +LS ++ VVFV++ LD LP VSR Q + FPK+KD DI
Sbjct: 460 IFDDCDTMSTDCWNTLSKIVDRAPRRVVFVLVCSSLDVLPHIIVSRCQKFFFPKLKDVDI 519
Query: 477 ACRLEKICVEEGLDFDQAALDFIAAKSCGSVRDAEMMLDQXXXXXXXXXXXXVHELTGIV 536
L+ I +E +D D+ AL +A++S GS+RDAEM L+Q V E+ G++
Sbjct: 520 IDSLQLIASKEEIDIDKDALKLVASRSDGSLRDAEMTLEQLSLLGTRISVPLVQEMVGLI 579
Query: 537 XXXXXXXXXXXXXXXXXXNTVIRARELMRSRIGPLQLVSQLANLIMDILAGKCVDGGSEV 596
NTV R +M + + PL L+SQLA +I DILAG +
Sbjct: 580 SDEKLVDLLDLALSADTVNTVKNLRIIMETGLEPLALMSQLATVITDILAGSYDFTKDQC 639
Query: 597 RSKFSGRYT-SEADLQKLSRAVRILSEAEKQLRISKNQTTWLTVALLQL----------- 644
+ KF R S+ D++KL +A++ LSE+EKQLR+S ++ TWLT ALLQL
Sbjct: 640 KRKFFRRQPLSKEDMEKLKQALKTLSESEKQLRVSNDKLTWLTAALLQLAPDKQYLLPHS 699
Query: 645 SSVDYPSVDVNDTKLCLREQSMEHLATGQCGDKSYRLGVQEDHKGTLDAIWYKATEICQS 704
SS D N T L + S H+ G D S + G ++ +++ IW E +
Sbjct: 700 SSAD---ASFNHTPLTDSDPS-NHVVAGTRRDDS-KQGFSCKNRPSVEDIWLAVIENVRV 754
Query: 705 GQLKTFLRKKGKLSSLHVDRSTSWLAIAELEFRHRHHVSKAEKSWKLIASSLQFILGCNI 764
L+ FL K+GK+ S+ + + + +L F S AE + I + + +LG +
Sbjct: 755 NGLREFLYKEGKIFSISIGSA----PMVQLMFNSPIAKSTAENFEEHILKAFEAVLGSPV 810
Query: 765 ELRITYEPR 773
L + E +
Sbjct: 811 TLEMRTESK 819
>AT5G45720.2 | Symbols: | AAA-type ATPase family protein |
chr5:18543338-18546629 REVERSE LENGTH=956
Length = 956
Score = 268 bits (684), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 167/488 (34%), Positives = 257/488 (52%), Gaps = 32/488 (6%)
Query: 297 RSLSMKFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSASRIFAAALN 356
+S + K+ P +F DL+GQN+VV++L AI++ + Y+FHGP GTGKTS +R+FA ALN
Sbjct: 343 QSFTQKYAPRTFRDLLGQNLVVQALSNAIAKRRVGLLYVFHGPNGTGKTSCARVFARALN 402
Query: 357 CLSVEGQKPCGLCRECVLFFSGRSKEVKEVDSVRINRTDQVKSLVKNACIPPISSRFKVF 416
C S E KPCG+C CV + G+++ ++E+ V ++ ++L+ I + V
Sbjct: 403 CHSTEQSKPCGVCSSCVSYDDGKNRYIREMGPV---KSFDFENLLDKTNIRQQQKQQLVL 459
Query: 417 IIDECQLLKAETWASLSNNLENLSEHVVFVMITPDLDKLPRSAVSRAQTYHFPKVKDADI 476
I D+C + + W +LS ++ VVFV++ LD LP VSR Q + FPK+KD DI
Sbjct: 460 IFDDCDTMSTDCWNTLSKIVDRAPRRVVFVLVCSSLDVLPHIIVSRCQKFFFPKLKDVDI 519
Query: 477 ACRLEKICVEEGLDFDQAALDFIAAKSCGSVRDAEMMLDQXXXXXXXXXXXXVHELTGIV 536
L+ I +E +D D+ AL +A++S GS+RDAEM L+Q V E+ G++
Sbjct: 520 IDSLQLIASKEEIDIDKDALKLVASRSDGSLRDAEMTLEQLSLLGTRISVPLVQEMVGLI 579
Query: 537 XXXXXXXXXXXXXXXXXXNTVIRARELMRSRIGPLQLVSQLANLIMDILAGKCVDGGSEV 596
NTV R +M + + PL L+SQLA +I DILAG
Sbjct: 580 SDEKLVDLLDLALSADTVNTVKNLRIIMETGLEPLALMSQLATVITDILAGSY------- 632
Query: 597 RSKFSGRYTSEADLQKLSRAVRILSEAEKQLRISKNQTTWLTVALLQL-----------S 645
F+ S+ D++KL +A++ LSE+EKQLR+S ++ TWLT ALLQL S
Sbjct: 633 --DFTKDQLSKEDMEKLKQALKTLSESEKQLRVSNDKLTWLTAALLQLAPDKQYLLPHSS 690
Query: 646 SVDYPSVDVNDTKLCLREQSMEHLATGQCGDKSYRLGVQEDHKGTLDAIWYKATEICQSG 705
S D N T L + S H+ G D S + G ++ +++ IW E +
Sbjct: 691 SAD---ASFNHTPLTDSDPS-NHVVAGTRRDDS-KQGFSCKNRPSVEDIWLAVIENVRVN 745
Query: 706 QLKTFLRKKGKLSSLHVDRSTSWLAIAELEFRHRHHVSKAEKSWKLIASSLQFILGCNIE 765
L+ FL K+GK+ S+ + + + +L F S AE + I + + +LG +
Sbjct: 746 GLREFLYKEGKIFSISIGSA----PMVQLMFNSPIAKSTAENFEEHILKAFEAVLGSPVT 801
Query: 766 LRITYEPR 773
L + E +
Sbjct: 802 LEMRTESK 809
>AT1G21690.3 | Symbols: EMB1968 | ATPase family associated with
various cellular activities (AAA) |
chr1:7615675-7618421 FORWARD LENGTH=341
Length = 341
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 96/232 (41%), Gaps = 29/232 (12%)
Query: 289 ISPTLETPRSLSMKFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSAS 348
++P L++ + K+RP D+ Q VVR L + LF+GP GTGKT+ +
Sbjct: 1 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHM-LFYGPPGTGKTTTA 59
Query: 349 RIFAAALNCLSVEGQKPCGLCRECVLFFSGRSKEVKEVDSVRINRTDQVKSLVKNACIPP 408
A A E + R E+ D IN V++ +K+
Sbjct: 60 --LAIAHQLFGPE-------------LYKSRVLELNASDDRGIN---VVRTKIKDFAAVA 101
Query: 409 ISSR----------FKVFIIDECQLLKAETWASLSNNLENLSEHVVFVMITPDLDKLPRS 458
+ S FK+ I+DE + + +L +E S+ F I + ++
Sbjct: 102 VGSNHRQSGYPCPSFKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEP 161
Query: 459 AVSRAQTYHFPKVKDADIACRLEKICVEEGLDFDQAALDFIAAKSCGSVRDA 510
SR + F + + ++ R+ IC EEGL D AL +++ S G +R A
Sbjct: 162 LASRCAKFRFKPLSEEVMSNRILHICNEEGLSLDGEALSTLSSISQGDLRRA 213
>AT1G21690.1 | Symbols: EMB1968, RFC4 | ATPase family associated
with various cellular activities (AAA) |
chr1:7615675-7618362 FORWARD LENGTH=339
Length = 339
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 96/232 (41%), Gaps = 29/232 (12%)
Query: 289 ISPTLETPRSLSMKFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSAS 348
++P L++ + K+RP D+ Q VVR L + LF+GP GTGKT+ +
Sbjct: 1 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHM-LFYGPPGTGKTTTA 59
Query: 349 RIFAAALNCLSVEGQKPCGLCRECVLFFSGRSKEVKEVDSVRINRTDQVKSLVKNACIPP 408
A A E + R E+ D IN V++ +K+
Sbjct: 60 --LAIAHQLFGPE-------------LYKSRVLELNASDDRGIN---VVRTKIKDFAAVA 101
Query: 409 ISSR----------FKVFIIDECQLLKAETWASLSNNLENLSEHVVFVMITPDLDKLPRS 458
+ S FK+ I+DE + + +L +E S+ F I + ++
Sbjct: 102 VGSNHRQSGYPCPSFKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEP 161
Query: 459 AVSRAQTYHFPKVKDADIACRLEKICVEEGLDFDQAALDFIAAKSCGSVRDA 510
SR + F + + ++ R+ IC EEGL D AL +++ S G +R A
Sbjct: 162 LASRCAKFRFKPLSEEVMSNRILHICNEEGLSLDGEALSTLSSISQGDLRRA 213
>AT1G21690.4 | Symbols: EMB1968 | ATPase family associated with
various cellular activities (AAA) |
chr1:7615675-7618362 FORWARD LENGTH=332
Length = 332
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 95/223 (42%), Gaps = 18/223 (8%)
Query: 289 ISPTLETPRSLSMKFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSAS 348
++P L++ + K+RP D+ Q VVR L + LF+GP GTGKT+ +
Sbjct: 1 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHM-LFYGPPGTGKTTTA 59
Query: 349 RIFAAAL-NCLSVEGQKPCGLCRECVLFFSGRSKEVKEVDSVRINRTDQVKSLVKNACIP 407
A L L + G+ + ++K+ +V + +
Sbjct: 60 LAIAHQLFGVLELNASDDRGI--------NVVRTKIKDFAAVAVGSNHRQSGY------- 104
Query: 408 PISSRFKVFIIDECQLLKAETWASLSNNLENLSEHVVFVMITPDLDKLPRSAVSRAQTYH 467
P S FK+ I+DE + + +L +E S+ F I + ++ SR +
Sbjct: 105 PCPS-FKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFR 163
Query: 468 FPKVKDADIACRLEKICVEEGLDFDQAALDFIAAKSCGSVRDA 510
F + + ++ R+ IC EEGL D AL +++ S G +R A
Sbjct: 164 FKPLSEEVMSNRILHICNEEGLSLDGEALSTLSSISQGDLRRA 206
>AT1G21690.2 | Symbols: EMB1968, RFC4 | ATPase family associated
with various cellular activities (AAA) |
chr1:7615675-7618362 FORWARD LENGTH=327
Length = 327
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 93/232 (40%), Gaps = 41/232 (17%)
Query: 289 ISPTLETPRSLSMKFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSAS 348
++P L++ + K+RP D+ Q V +L F+GP GTGKT+ +
Sbjct: 1 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVCPHML-------------FYGPPGTGKTTTA 47
Query: 349 RIFAAALNCLSVEGQKPCGLCRECVLFFSGRSKEVKEVDSVRINRTDQVKSLVKNACIPP 408
A A E + R E+ D IN V++ +K+
Sbjct: 48 --LAIAHQLFGPE-------------LYKSRVLELNASDDRGIN---VVRTKIKDFAAVA 89
Query: 409 ISSR----------FKVFIIDECQLLKAETWASLSNNLENLSEHVVFVMITPDLDKLPRS 458
+ S FK+ I+DE + + +L +E S+ F I + ++
Sbjct: 90 VGSNHRQSGYPCPSFKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEP 149
Query: 459 AVSRAQTYHFPKVKDADIACRLEKICVEEGLDFDQAALDFIAAKSCGSVRDA 510
SR + F + + ++ R+ IC EEGL D AL +++ S G +R A
Sbjct: 150 LASRCAKFRFKPLSEEVMSNRILHICNEEGLSLDGEALSTLSSISQGDLRRA 201
>AT1G63160.1 | Symbols: RFC2 | replication factor C 2 |
chr1:23422068-23423771 REVERSE LENGTH=333
Length = 333
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 88/210 (41%), Gaps = 19/210 (9%)
Query: 302 KFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSASRIFAAALNCLSVE 361
K+RP+ D+VG V S L I+R + GP GTGKT++ I A A L
Sbjct: 20 KYRPSKVVDIVGNEDAV-SRLQVIARDGNMPNLILSGPPGTGKTTS--ILALAHELLGTN 76
Query: 362 GQKPCGLCRECVLFFSGRSKEVKEVDSVRINRTDQVKSLV-KNACIPPISSRFKVFIIDE 420
+E VL + + + + +D VR +++K K +PP R KV I+DE
Sbjct: 77 -------YKEAVLELN--ASDDRGIDVVR----NKIKMFAQKKVTLPP--GRHKVVILDE 121
Query: 421 CQLLKAETWASLSNNLENLSEHVVFVMITPDLDKLPRSAVSRAQTYHFPKVKDADIACRL 480
+ + +L +E S F + K+ SR F ++ D I RL
Sbjct: 122 ADSMTSGAQQALRRTIEIYSNSTRFALACNTSAKIIEPIQSRCALVRFSRLSDQQILGRL 181
Query: 481 EKICVEEGLDFDQAALDFIAAKSCGSVRDA 510
+ E + + L+ I + G +R A
Sbjct: 182 LVVVAAEKVPYVPEGLEAIIFTADGDMRQA 211