Miyakogusa Predicted Gene

Lj1g3v0294720.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0294720.2 Non Chatacterized Hit- tr|G7IJ51|G7IJ51_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,52.08,0.00000000000003,RNAse_H_YqgF: RNAse H domain protein,
YqgF family,Resolvase, holliday junction-type, YqgF-like;
Ribo,CUFF.25517.2
         (199 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G12244.1 | Symbols:  | Polynucleotidyl transferase, ribonucle...   199   9e-52

>AT1G12244.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H-like superfamily protein | chr1:4157719-4158893
           FORWARD LENGTH=254
          Length = 254

 Score =  199 bits (506), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 108/156 (69%), Positives = 134/156 (85%), Gaps = 6/156 (3%)

Query: 50  SLDEFPPNALRR------RGGFTLGVDLGMARTGIAISKGFNFRPVTVLELRGQKLEVQM 103
           S+DE PPNA+RR      RGGF+LGVDLG++RTGIAISKG+  +P+TVL+ RGQKLE ++
Sbjct: 61  SIDEIPPNAVRRKIDRNWRGGFSLGVDLGLSRTGIAISKGYTVKPLTVLKSRGQKLETRL 120

Query: 104 INIAEQEEADEFVIGLPRSFDGKETPQSNIVRTVAGRLAIRAAERGWRVYLQDEHGTTTE 163
           + IAE+EEADEF+IGLPRS DGKET QSN +R+VAGRLAI+AAERGWRVY+ DEHGTT+E
Sbjct: 121 LEIAEEEEADEFIIGLPRSSDGKETIQSNKIRSVAGRLAIQAAERGWRVYVFDEHGTTSE 180

Query: 164 AVNRMVNMGLSKSSQQRKLDAYAAMMVLERYFSTSG 199
           A +RM+ MGLSKS +Q + DAYAA+++LERYFST G
Sbjct: 181 ASDRMIVMGLSKSERQNRSDAYAAVILLERYFSTQG 216