Miyakogusa Predicted Gene

Lj1g3v0268490.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0268490.1 Non Chatacterized Hit- tr|I3M3B5|I3M3B5_SPETR
Uncharacterized protein OS=Spermophilus
tridecemlineat,35.35,0.000000000008,FYVE/PHD zinc finger,Zinc finger,
FYVE/PHD-type; ZF_PHD_2,Zinc finger, PHD-finger; ZF_RING_2,Zinc
fi,CUFF.25438.1
         (649 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G77250.1 | Symbols:  | RING/FYVE/PHD-type zinc finger family ...   353   2e-97
AT3G01460.1 | Symbols: MBD9, ATMBD9 | methyl-CPG-binding domain ...    72   8e-13
AT3G08020.1 | Symbols:  | PHD finger family protein | chr3:25577...    58   2e-08
AT5G24330.1 | Symbols: ATXR6, SDG34 | ARABIDOPSIS TRITHORAX-RELA...    54   3e-07
AT1G79350.1 | Symbols: EMB1135 | RING/FYVE/PHD zinc finger super...    53   6e-07
AT4G29940.1 | Symbols: PRHA | pathogenesis related homeodomain p...    53   8e-07
AT4G29940.2 | Symbols: PRHA | pathogenesis related homeodomain p...    53   8e-07
AT4G14700.1 | Symbols: ATORC1A, ORC1A | origin recognition compl...    52   9e-07
AT4G12620.1 | Symbols: ORC1B, ATORC1B, UNE13 | origin of replica...    50   3e-06
AT5G44800.1 | Symbols: CHR4, PKR1 | chromatin remodeling 4 | chr...    49   8e-06

>AT1G77250.1 | Symbols:  | RING/FYVE/PHD-type zinc finger family
           protein | chr1:29020444-29022938 REVERSE LENGTH=522
          Length = 522

 Score =  353 bits (906), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 203/498 (40%), Positives = 282/498 (56%), Gaps = 26/498 (5%)

Query: 161 AVADRFGSSERDSGGVECLRTYKRRKRGKSSSEIKVQEGSGEDAETINQLSGQKAFKIVE 220
           A+A+   +S RDS  ++   TYKRRK G+S S  K  E      E ++    +++     
Sbjct: 36  AMANSANASSRDSKKIQ---TYKRRKLGRSYSANKCSENDRFSMEGVSHSESRESVSY-- 90

Query: 221 DGQQCSSQFELSSHRLQSKANGHANVMCNGFSSESDGRGVTERCQHVFRNILASEKFSSL 280
                  +F + +H         +       S  ++   VT  CQHV  ++LAS++F+SL
Sbjct: 91  ------ERFSIRTHLTGELPKPPSPN--KPSSESTNHETVTAGCQHVLSHVLASKEFASL 142

Query: 281 SKVLLENFQGMKPESVFDFSVINSRMKEQAYDQSPTLFLLDIQQVWMKLQNTGNKIVAIA 340
           +++L EN QG+K +     ++I++RMKE  Y+ SP LF  D+Q+VW K+Q+ GN +  +A
Sbjct: 143 NRLLSENLQGVKIDDFTSRTLIDTRMKEGVYEGSPLLFSTDLQEVWQKMQDVGNDMAVLA 202

Query: 341 KSLSNMSKTSYYEQ---FSNWESNSHMKQEQTEECATYKICTCRHCGEKADGTDCLVCDS 397
            SL  +S+TSY EQ   F   ES      E     +   IC  + CGEKA+  DCL CD 
Sbjct: 203 NSLLELSRTSYKEQLKQFYTGESKPCPNAENIRNDSVSDIC--KLCGEKAEARDCLACDH 260

Query: 398 CEEMYHVSCIEPAVKEIPHKSWFCAHCTASGIGSPHEDCVVCERLN---VPKTLNNIVGE 454
           CE+MYHVSC +P  K +P  SW+C  CT+ GIGSPHE+CVVCE++    + KT N  V  
Sbjct: 261 CEDMYHVSCAQPGGKGMPTHSWYCLDCTSKGIGSPHENCVVCEKMKTQGMMKTDNRSVDT 320

Query: 455 ESFHAXXXXXXXXXXXXXCSYDGIQVSKGGTNSSHCKICGQEVD-GEKIKICGHSFCSSK 513
            +                 +++   V +   +S  C+ CG +VD G K   C H FC  K
Sbjct: 321 STECKEDSNESEENSSCNMNHEVHHV-EMSRDSELCRTCGTKVDSGGKYITCDHPFCPHK 379

Query: 514 YYHVRCLSGKQIKSYGRCWYCPSCLCQVCFADRDDDKIVRCDGCDHAYHIYCMEPPQNSI 573
           YYH+RCL+ +QIK +G  WYC SCLC+ C  D+DDDKIV CDGCD AYHIYCM PP  S+
Sbjct: 380 YYHIRCLTSRQIKLHGVRWYCSSCLCRNCLTDKDDDKIVLCDGCDDAYHIYCMRPPCESV 439

Query: 574 PRGKWFCRSCDAGIQAIREARKAYE--TNNSRSDENVSKLNDDKKWNNKQGKELDK-VGG 630
           P G+WFC +C A I  +++ARKA+E      +  + +   N   K  +K   ELD+ VGG
Sbjct: 440 PNGEWFCTACKAAILKVQKARKAFEKKMETVQKQKGIKPKNLQGKPQSKDNGELDQSVGG 499

Query: 631 MDMLLTAANTLKFEEGHT 648
           MDMLL AA+TLK EE  T
Sbjct: 500 MDMLLNAADTLKDEEQMT 517


>AT3G01460.1 | Symbols: MBD9, ATMBD9 | methyl-CPG-binding domain 9 |
            chr3:173316-182038 FORWARD LENGTH=2176
          Length = 2176

 Score = 72.4 bits (176), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 514  YYHVRCLSG---KQIK----SYGRCWYCP--SCLCQVCFADRDDDKIVRCDGCDHAYHIY 564
            Y  + CLS    K+IK    S  +    P    +C+VC  D+DDD ++ CD CD  YH Y
Sbjct: 1256 YRKLECLSAEMKKEIKDIVVSVNKLPKAPWDEGVCKVCGVDKDDDSVLLCDTCDAEYHTY 1315

Query: 565  CMEPPQNSIPRGKWFCRSCDAGIQAIREARKAYETNNSR 603
            C+ PP   IP G W+C SC    +  +EA ++Y+    R
Sbjct: 1316 CLNPPLIRIPDGNWYCPSCVIAKRMAQEALESYKLVRRR 1354



 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 81/201 (40%), Gaps = 35/201 (17%)

Query: 260  VTERCQHVFRNILASEKFSSLSKVLLENF--------QGM--KPESV---FDFSVINSRM 306
            + ++C+ V R + A+++   L  +L             G+   P  V    DF  I+ R+
Sbjct: 1135 IMKKCRAVLRGVAAADEDKVLCTLLGRKLLNSSDNDDDGLLGSPAMVSRPLDFRTIDLRL 1194

Query: 307  KEQAYDQSPTLFLLDIQQVWMKLQNT---GNKIVAIAKSLSNMSKTSY-------YEQFS 356
               AYD S   FL D+ ++W  ++         V +  +LS   K+ Y        ++  
Sbjct: 1195 AAGAYDGSTEAFLEDVLELWSSIRVMYADQPDCVDLVATLSEKFKSLYEAEVVPLVQKLK 1254

Query: 357  NWESNSHMKQEQTEEC------------ATYKICTCRHCGEKADGTDCLVCDSCEEMYHV 404
            ++     +  E  +E             A +    C+ CG   D    L+CD+C+  YH 
Sbjct: 1255 DYRKLECLSAEMKKEIKDIVVSVNKLPKAPWDEGVCKVCGVDKDDDSVLLCDTCDAEYHT 1314

Query: 405  SCIEPAVKEIPHKSWFCAHCT 425
             C+ P +  IP  +W+C  C 
Sbjct: 1315 YCLNPPLIRIPDGNWYCPSCV 1335


>AT3G08020.1 | Symbols:  | PHD finger family protein |
           chr3:2557753-2561534 REVERSE LENGTH=779
          Length = 779

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 43/85 (50%), Gaps = 10/85 (11%)

Query: 513 KYYHVRCL-SGKQIKS--YGRCWYCPSC-LCQVCFADRDDDKIVRCDGCDHAYHIYCMEP 568
           K YH  CL S  Q +   +   W CPSC +C+VC    D +K + C  CD AYH YC  P
Sbjct: 173 KKYHKNCLKSWAQHRDLFHWSSWSCPSCRVCEVCRRTGDPNKFMFCKRCDAAYHCYCQHP 232

Query: 569 PQNSIPRGKWF------CRSCDAGI 587
           P  ++  G +       C SCD+ +
Sbjct: 233 PHKNVSSGPYLCPKHTRCHSCDSTV 257


>AT5G24330.1 | Symbols: ATXR6, SDG34 | ARABIDOPSIS TRITHORAX-RELATED
           PROTEIN 6 | chr5:8295245-8296997 REVERSE LENGTH=349
          Length = 349

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 30/46 (65%)

Query: 538 LCQVCFADRDDDKIVRCDGCDHAYHIYCMEPPQNSIPRGKWFCRSC 583
           +C+ C + +   K++ CD CD  +H++C+ P   S+P+G WFC SC
Sbjct: 34  VCEECSSGKQPAKLLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSC 79


>AT1G79350.1 | Symbols: EMB1135 | RING/FYVE/PHD zinc finger
           superfamily protein | chr1:29844829-29853215 REVERSE
           LENGTH=1295
          Length = 1295

 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 8/101 (7%)

Query: 538 LCQVCFADRDDDKIVRCDGCDHAYHIYCMEPPQNSIPRGKWFCRSC----DAGIQA---- 589
           +CQ+C  + +  K++ C  CD  +H  C+ PP   +P   W C SC    +  IQA    
Sbjct: 693 ICQICSGEDERKKLLHCSECDKLFHPDCVVPPVIDLPSEAWICFSCKEKTEEYIQARRLY 752

Query: 590 IREARKAYETNNSRSDENVSKLNDDKKWNNKQGKELDKVGG 630
           I E +K YE    R  + +  +      NN     +D++GG
Sbjct: 753 IAELQKRYEAALERKSKIIEIIRSLNLPNNPLDDIVDQLGG 793


>AT4G29940.1 | Symbols: PRHA | pathogenesis related homeodomain
           protein  A | chr4:14648346-14652710 REVERSE LENGTH=796
          Length = 796

 Score = 52.8 bits (125), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 8/63 (12%)

Query: 533 YCPSCLCQVCFADRDDDKIVRCDG-CDHAYHIYCMEPP--QNSIPRGK--WFCRSCDAGI 587
           +C  C  +  F D D   I+ CDG C+ A+H  C++PP    SIP G   WFC+ CD  I
Sbjct: 192 FCAECNSREAFPDND---IILCDGTCNRAFHQKCLDPPLETESIPPGDQGWFCKFCDCKI 248

Query: 588 QAI 590
           + I
Sbjct: 249 EII 251


>AT4G29940.2 | Symbols: PRHA | pathogenesis related homeodomain
           protein  A | chr4:14648346-14652710 REVERSE LENGTH=769
          Length = 769

 Score = 52.8 bits (125), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 8/63 (12%)

Query: 533 YCPSCLCQVCFADRDDDKIVRCDG-CDHAYHIYCMEPP--QNSIPRGK--WFCRSCDAGI 587
           +C  C  +  F D D   I+ CDG C+ A+H  C++PP    SIP G   WFC+ CD  I
Sbjct: 192 FCAECNSREAFPDND---IILCDGTCNRAFHQKCLDPPLETESIPPGDQGWFCKFCDCKI 248

Query: 588 QAI 590
           + I
Sbjct: 249 EII 251


>AT4G14700.1 | Symbols: ATORC1A, ORC1A | origin recognition complex
           1 | chr4:8422236-8424665 FORWARD LENGTH=809
          Length = 809

 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 27/47 (57%)

Query: 539 CQVCFADRDDDKIVRCDGCDHAYHIYCMEPPQNSIPRGKWFCRSCDA 585
           CQ+CF    +  ++ CD C   +H+ C++PP   +P G W C+ C+ 
Sbjct: 166 CQICFKSHTNTIMIECDDCLGGFHLNCLKPPLKEVPEGDWICQFCEV 212


>AT4G12620.1 | Symbols: ORC1B, ATORC1B, UNE13 | origin of
           replication complex 1B | chr4:7459812-7462253 REVERSE
           LENGTH=813
          Length = 813

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 539 CQVCFADRDDDKIVRCDGCDHAYHIYCMEPPQNSIPRGKWFCRSCDA 585
           CQ+CF   D + ++ CD C   +H+ C++PP   +P G W C+ C+ 
Sbjct: 169 CQICFKS-DTNIMIECDDCLGGFHLKCLKPPLKEVPEGDWICQFCEV 214


>AT5G44800.1 | Symbols: CHR4, PKR1 | chromatin remodeling 4 |
           chr5:18083659-18092162 REVERSE LENGTH=2223
          Length = 2223

 Score = 49.3 bits (116), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/37 (45%), Positives = 22/37 (59%)

Query: 389 GTDCLVCDSCEEMYHVSCIEPAVKEIPHKSWFCAHCT 425
           G D L CDSC   YH +C+ P +K IP+  W C  C+
Sbjct: 84  GGDLLCCDSCPRTYHTACLNPPLKRIPNGKWICPKCS 120