Miyakogusa Predicted Gene

Lj1g3v0265410.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0265410.1 Non Chatacterized Hit- tr|I1LXC2|I1LXC2_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.21225
PE,76.6,0.00000000005,seg,NULL,
NODE_26488_length_367_cov_89.874657.path2.1
         (57 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G76970.1 | Symbols:  | Target of Myb protein 1 | chr1:2892284...    49   5e-07
AT1G21380.1 | Symbols:  | Target of Myb protein 1 | chr1:7485806...    46   6e-06

>AT1G76970.1 | Symbols:  | Target of Myb protein 1 |
           chr1:28922841-28924854 REVERSE LENGTH=446
          Length = 446

 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 23/35 (65%), Positives = 30/35 (85%)

Query: 17  GQTQNLSLNSSTPTKQEKLEDALFKDLLDFAKSKT 51
           GQT+NLSL SS P K+EK ED LFKDL++FAK+++
Sbjct: 402 GQTRNLSLTSSEPQKEEKPEDLLFKDLVEFAKTRS 436


>AT1G21380.1 | Symbols:  | Target of Myb protein 1 |
           chr1:7485806-7488032 REVERSE LENGTH=506
          Length = 506

 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/44 (54%), Positives = 31/44 (70%), Gaps = 7/44 (15%)

Query: 15  LLGQTQNLSLNSST-------PTKQEKLEDALFKDLLDFAKSKT 51
           LLGQ++NLSLN +        P K +K ED LFKDL+DFAK++T
Sbjct: 447 LLGQSRNLSLNPTASAAPVTPPKKDDKPEDILFKDLMDFAKTRT 490