Miyakogusa Predicted Gene

Lj1g3v0250200.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0250200.1 Non Chatacterized Hit- tr|I3T9E6|I3T9E6_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,87.57,0,AAA_18,NULL; SUBFAMILY NOT NAMED,NULL; POS9-ACTIVATING
FACTOR FAP7-RELATED,NULL; P-loop containing n,CUFF.25410.1
         (177 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G60340.1 | Symbols:  | P-loop containing nucleoside triphosph...   238   2e-63

>AT5G60340.1 | Symbols:  | P-loop containing nucleoside triphosphate
           hydrolases superfamily protein | chr5:24275098-24275891
           REVERSE LENGTH=178
          Length = 178

 Score =  238 bits (607), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 107/167 (64%), Positives = 139/167 (83%)

Query: 7   KRKRPNILVTGTPGTGKTTLSADLAEASQLRHINVGDLVKEKNLHDGWDGELDCYLLNED 66
           +R+RPN+L+TGTPGTGK+T ++ LAEA+ LR+I +GDLVKEK  + GWD EL+C+ +NED
Sbjct: 10  RRERPNLLITGTPGTGKSTTASALAEATNLRYICIGDLVKEKEFYHGWDNELECHFINED 69

Query: 67  LVCDELEDVIEEGGNIVDYHGCDFFPERWFDYVVVLQTDNTVLYDRLSRRGYKDAKLSNN 126
            V DEL+D + EGGNIVDYHGCDFFP+RWFD VVVL+T+N+VLYDRL+ RGY   KLSNN
Sbjct: 70  SVIDELDDAMIEGGNIVDYHGCDFFPQRWFDRVVVLRTENSVLYDRLTNRGYSGTKLSNN 129

Query: 127 IESEIFQVLLEEAKESYPEDRVVAMKSDTIEDTSRNVATLTDWVRVW 173
           ++ E++QVLLEEA +SY E+ V  ++S+TIED S NV+TLTDW+  W
Sbjct: 130 LQCEMYQVLLEEAHDSYDEEIVTELQSNTIEDISNNVSTLTDWINAW 176