Miyakogusa Predicted Gene

Lj1g3v0250170.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0250170.1 tr|G4T6V1|G4T6V1_PIRID Probable
COX12-cytochrome-c oxidase, subunit VIB OS=Piriformospora indica
(st,46.51,4e-19,Q8LCP1_ARATH_Q8LCP1;,NULL; CYTOCHROME C OXIDASE
POLYPEPTIDE VIB,NULL; COX6B,Cytochrome c oxidase, su,CUFF.25413.1
         (177 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G22450.1 | Symbols: COX6B, ATCOX6B2 | cytochrome C oxidase 6B...   169   8e-43
AT4G28060.1 | Symbols:  | Cytochrome c oxidase, subunit Vib fami...   141   2e-34
AT5G57815.1 | Symbols:  | Cytochrome c oxidase, subunit Vib fami...   139   8e-34
AT1G32710.1 | Symbols:  | Cytochrome c oxidase, subunit Vib fami...    67   8e-12

>AT1G22450.1 | Symbols: COX6B, ATCOX6B2 | cytochrome C oxidase 6B |
           chr1:7925447-7926918 FORWARD LENGTH=191
          Length = 191

 Score =  169 bits (428), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 75/87 (86%), Positives = 80/87 (91%), Gaps = 1/87 (1%)

Query: 92  SGDQEAAEETP-EIKLETAPVDFRFPTTNQTRHCFTRYIEYHRCVAAKGDGAPECDKFAK 150
           +  +E AEETP EIKLETAP DFRFPTTNQTRHCFTRY+EYHRCVAAKGD APECDKFAK
Sbjct: 104 NASEEVAEETPDEIKLETAPADFRFPTTNQTRHCFTRYVEYHRCVAAKGDDAPECDKFAK 163

Query: 151 YYRALCPGEWVDRWNEQRENGTFPGPL 177
           +YR+LCP EWVDRWNEQRENGTFPGPL
Sbjct: 164 FYRSLCPSEWVDRWNEQRENGTFPGPL 190


>AT4G28060.1 | Symbols:  | Cytochrome c oxidase, subunit Vib family
           protein | chr4:13944018-13945602 REVERSE LENGTH=78
          Length = 78

 Score =  141 bits (356), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 62/75 (82%), Positives = 69/75 (92%)

Query: 103 EIKLETAPVDFRFPTTNQTRHCFTRYIEYHRCVAAKGDGAPECDKFAKYYRALCPGEWVD 162
           EI+L+TAP DFRFPTTNQTRHCFTRYIE+HRC  AKG+ A EC++FAKYYRALCPGEWVD
Sbjct: 4   EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEDANECERFAKYYRALCPGEWVD 63

Query: 163 RWNEQRENGTFPGPL 177
           +WNEQRE GTFPGPL
Sbjct: 64  KWNEQRETGTFPGPL 78


>AT5G57815.1 | Symbols:  | Cytochrome c oxidase, subunit Vib family
           protein | chr5:23426753-23427637 FORWARD LENGTH=78
          Length = 78

 Score =  139 bits (351), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 60/75 (80%), Positives = 70/75 (93%)

Query: 103 EIKLETAPVDFRFPTTNQTRHCFTRYIEYHRCVAAKGDGAPECDKFAKYYRALCPGEWVD 162
           EI+L+TAP DFRFPTTNQTRHCFTRYIE+HRC  AKG+ + +C++FAKYYRALCPGEWVD
Sbjct: 4   EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEESNDCERFAKYYRALCPGEWVD 63

Query: 163 RWNEQRENGTFPGPL 177
           +WNEQRE+GTFPGPL
Sbjct: 64  KWNEQRESGTFPGPL 78


>AT1G32710.1 | Symbols:  | Cytochrome c oxidase, subunit Vib family
           protein | chr1:11833113-11833706 FORWARD LENGTH=134
          Length = 134

 Score = 66.6 bits (161), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 37/55 (67%)

Query: 109 APVDFRFPTTNQTRHCFTRYIEYHRCVAAKGDGAPECDKFAKYYRALCPGEWVDR 163
           A V+ RFP TN+TRHCF R+++YH+C+   G  A +C+    Y R++CP E V +
Sbjct: 59  AAVEERFPVTNETRHCFNRFMQYHKCIEKNGRDANDCNNLRDYVRSICPEELVSK 113